>input_sequence_78977
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----------------------------------------------------------------------ATGTCAAGGG
ACAGCGTGCTGATCGGCGCCTCCATGTTCGTGCTCGTCGTGCTCTCCCTCGTCACCTTCTTCTGCTCCAACCGACGGCGA
TTGGCGCAGAGCTCGTCGTCGCGGGGCGTAGAAGACAATCAAGACATCGAGCTCGGGCACGGCAGGAGTGCCGC------
---TGCGGGACTCGACGAGGCCGTCCTGGCCGCCTACCCGACGACGGTGTACTCGTCGTCCATCCAG---CATCA---GT
TGGCGGCTACCAGT---------GAGCGGACAGTGAAAGAGGGGGAACGCGGGTGTGCGGTGTGCCTGGCGGAGTACGCC
GACGGCGACGAGCTGCGGGTTATGCCCGGCTGCGCGCACACGTTCCACCGGCGGTGCGTCGACCAGTGGCTCCGGCGGCG
GCCCAGCTGCCCACTCTGCCGCGCGTCGTCGCAGAGCAGAGCACCACCGGCGCATGCTAACCGTCACAGCGTCAACAGCA
TG-CCGATGTAG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr5D_1_TraesCS5D01G036400
AAACTGCAGTCAAATATCTCATTTACCTAGCTTCATCATTCATAGTATAAACGA-TCAACT-AAGTGCACGCTTCACCGT
CTTAATCGCCTACTCTAGCATCATGTTCCTACATCATTACTAGTAATTGTTTAGGCTGGTCGTAACTGTAGTATCATAGC
TAGTATCATGCATGCCAACTGGACAATTTTGATGTGGTGTCATAAATTTAAATAAAGAAAGAGAAGGTTGAGTATCATAT
CATGATACCGTATCATAATAAATACTATGCTACTATATGCCATGCATGCCAATAAATAAAGTATTACTCCCTCCGTTCCT
AAATGTAAGTCTTTTTAGAGATTTCACTACAAACTACATACGGATGTATCTAGACATATTTTAGAGTGTAGTTCACTCAT
TTTGCTCCGTATCTAGTTTATAGTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTACATGATATTAATATA
TGATGCTATGTATTAGGGAGGTGGTATCATATAATAGTATCATATGCATGGTACTAGTATATGATACTCTTCGTTACAAC
CAGCCTTATTGTACTATCAGTAGAAACACATTTCT-TTCTAGCTGACAGCATTTGCATTAGCGAACATGCCACGACACCC
T--CTTCTT----TACTGGTTAAAATTTGCAGGCTCTTTTTCTCAGTCAAATCAAAGCAAAAAA----GCCGATAGTCAT
AAA-----------------------------------------------------------------------------
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---------------------AAG---TTGAGAGAAAGGTCCCACTGTCACAGGAATATGAATACAACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAACGAAT--ATGTTGACAGGAAAAGGTAA--------AAGTTGGAA---TGCGAGG
-----TCATCGTCAT--------TACCATTGTCTTTGTGGTGGACGGCGGAGATTTGATCTGACCGTGAGGTGGCAGTTG
GCGCAAATCTTAATACACGCAGAAAG--TATATA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
ATACGTACGTATGTGCCACGGCCAGGTTGTCCCTGCTTTGCTGTGACGTACGGTGCAATCTGCA---AGCATGTCAAGGG
ACAGCGTGCTGATCGGCGCCTCCATGTTCGTGCTCGTCGTGCTCTCCCTCGTCACCTTCTTCTGCTCCAACCGACGGCGA
TTGGCGCAGAGCTCGTCGTCGCGGGGCGTAGAAGACAATCAAGACATCGAGCTCGGGCACGGCAGGAGTGCCGC------
---TGCGGGACTCGACGAGGCCGTCCTGGCCGCCTACCCGACGACGGTGTACTCGTCGTCCATCCAG---CATCA---GT
TGGCGGCTACCAGT---------GAGCGGACAGTGAAAGAGGGGGAACGCGGGTGTGCGGTGTGCCTGGCGGAGTACGCC
GACGGCGACGAGCTGCGGGTTATGCCCGGCTGCGCGCACACGTTCCACCGGCGGTGCGTCGACCAGTGGCTCCGGCGGCG
GCCCAGCTGCCCACTCTGCCGCGCGTCGTCGCAGAGCAGAGCACCACCGGCGCATGCTAACCGTCACAGCGTCAACAGCA
TG-CCGATGTAGCCTGTCCAGAGTC----GGGACCGTT--CCGGCCGCAA--CGGCAAGATGTGTCGTACTCGATGCCTC
GTACGG----------------------------GGCAATTT-GTGACCACCTACATACCGGAAGATGTATAGATGTCCT
GTAAGGAGCTGCCATGTA----GGGC---------AGAGTAGGTAGCTAAGCTAGGTAGGTCGTCATGGCC---------
ATGTGACCATGACTC-GT---TCTCTCTAAAAAGACACAGCTCCTGAATTCATTCATTCGTACTCCATCTAACCACCTGG
CAACAGTTTAATTACGGGCATCTATATTTTTCGAAATTCATGAACATTTTTCTATCTTGACAAACATTTCTTGAAATGCA
TGGACGTTTTTAAATTGATGTTTTTTTGGCAAATTGGGAGCATTTTTTGATTTGTTGTGAACATTTTATAAAATTAACAT
GAATATTTTTCAATTTTGCGAACGTTTTTTAAAATGCATGAACATTTTCTGAGTAGGCGAATATTCTTTTCAAAATCATG
AACATTTTGTGATTTCCCAAATATGTTTTCAAAATCATAAACAATTTTTGAATCAGTAAAAATTTTATGATCCCGGACAT
ATTTCAAAAGCATGAACTTTTTTGAATTCACGAATATTTTATAATTTGTTGTTTTTTTGTTAAAAAATTAACAATTATTT
GAACCAAAATGTTTTAAAGAGGAAAAACAGAAAAATAAAAAGGAAAACAGAAAAAGGAAAGGAAAAAACAGGGTGTCCCG
CCCTTTCTATCTCTCAATAGAGGCTACTGTGATTTATTGTCAATCATAATCTAAGATAAGAGGACAAACATAAGGATGAT
TGGTGGGTTTAACTGCTATTGGTAATGATGAAACAACATGCAAACCCTTCATTTGGGATTAGAGTGAGTGTTTCTAGGAC
ATTTAATTGGACAAAGTCATGTACTAAGAGTATCTCTAGATCTTTTCCTAAAAAAACATTTAACCCCTAGATGGACTCTT
TTTTGTGGGTTAAACCATGTCTCGCGCTTCCACCA
>chr5B_1
AAACTGCGGTCAAATATCTCATTTACCTAGCTTCATCATTCATAGTATAAACAA-TCAACTAAAATGCATGCTTCACCGT
CTTAATCGCCTACTTAAGCATCATGTTCCTACATCATTACTAGTAATTGTTTACTA------------------------
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-----------TACTATCAGCAGGCACACATTTTTTTTCAAGCTGTC-GCATTTGCATTAGCGAACATGCCACGACACCC
T--CTTCTTAATTTACTGGTTAAAATTTGCAGCATCTTTTTCTTAGTCAAATCAAAGCAAAAAA----TCCGATAGTCAT
GAA-----------------------------------------------------------------------------
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---------------------AAA---TTGAGAGAAAGGTCCCACTGTCCCAGGAATATGAATACAACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAACGAAT--TTGTTGACACGAAAAGGTAA--------AAGTA-GAA---CGCGAGG
CTTGGTGATCGTCAT--------TACCATTGTCTTTGTGGTGGACGGTGGCGATTTGATCTGACCATGAGGTGGCAGTTG
GCGCAAATCTTAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------
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------------------CCTGCATGTTCGTGCTCGTCGTGCTTTCCCTCGTCACCTTCTTCTGCTCCAACCGACGCCGA
GTGGCGCAGAGCTCGTCCCCGCGGGGCGTAGAAGACAATCAAGACATCGAGCTCGGGCACGGCAGGAGTGCCAC------
---CGTGGGGCTCGACGAGGCCGTCCTGGCCGCGTACCCGACGACGGTGTACTCGTCGTCCATCCAG---CATCA---GG
CGGCGGCTACCGGT---------GAGCGGACAGTGAAAGAGTGGGAACGCGGGTGTGCGGTGTGCCTGGCAGAGTACGCC
GACGGCGACGAGCTGCGGGTGCTTCCCGGCTGCGCGCACGCGTTCCACCGGCGGTGCGTCGACCAATGGCTCTGGCGGCG
GCCCAGCTGCCCGCTCTGCCGCACGTCGCCGCAGAGCAGAGCACCACCGGCGCATGCTAACCGTCACAGCGTCAGCAGCA
TG-CCGATGTAGCCTGTCAGAAATC----GGGACCGTTTTCCGGCCGGATAGCGGCAAGAAGAGTCGCACTCGATGCCTC
GTACGG----------------------------AGCAATTT-GTGACCACCTAAGTGCCGGAAGATGTATA--------
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-----------------------------------
>chr5A_1
AAACTGCAGTCAAATATCTCATTTACCTAGCTTCATCATTCATAGTATAAACAAATCAATTAAAATGCATGCTTCAACGT
CTTAATCGCCTACTTTAGCATCATGTTCCTACATCATTACTACTAATTCTTTACTA------------------------
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-----------TACTATCAGCACACACACATTTCTTTTCAAGCTGTC-GCATTTGCATTAGCGAACATGCCACGACACCC
T--CTTCTT----TACTGGTTAAAATTTGCAGGCTGTTTTTCTCAATCAAATCAAAGCAAAAAA----GCCGATAGTCAT
GAA-----------------------------------------------------------------------------
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---------------------AAA---TTGAGAGAAAGGTCCCACTGTCCCAGGAATATGAATACAACTGTATATCTTAA
CAGGGAATCGTGCACGCAGCAAGCAACGCAT--ATGTTGACAGGAAAAGGTAA--------AAGTTGGAA---TGCGAGG
CTTGGTCATCGTCAT--------TACCATTGTCTTTGTGGTGGACGGCGGAGATTTGATCTGATCGTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
ATACGTACGTATGTGCCACGGCCAGGTTGTCCCTG--------TGACGTACGGTACAGTCTGCA---ACCATGTCAAGGG
ACAGCGTGCTGATCGGCGCCTCCATGTTCGTGCTCGTCGTGCTCTCCCTCGTCACCTTCTTCTGCTCCAACCGACGCCGA
CTGGCGCAGAGCTCGTCGCGGCAGGGCGTTGTC---------GACATCGAGCTCGGGCACGGCAGGTGCGCCGC------
---CTTGGGGCTCGACGAGGCCGCCCTGGCCGCGTACCCGACGACGGTGTACTCGTCGTCCATCCAG---CATCATCAGG
CGGCGGCTACCGTC---------GAGCAGACTGCGA---AGGAGGAGCGGGGGTGCGCGGTGTGCCTGGCGGAGTACGCC
GACGGCGATGAGTTGCGGGTGCTGCCCGGCTGTGCGCACGCGTTCCATCGACGGTGCGTCGACCAGTGGCTCCGGCGGCG
GCCCAGCTGCCCGCTCTGCCGCACGTCGCCGCAGAGCAGAGCATCACCGGCGCATGCTAACCGTCGTCAGAGCGTCAGCG
TG-CCGATGTAGCCTGTCGACAGTC----GGGACCGTT--CCGGCCGTATAGCGGCAAGATGTATCGTACTCAATGCCTC
GGACGG----------------------------AACAATTTGGTGACCATCTACGTGCCGGAAGATGTATAGATTTCC-
----GGAGCCGCCATCTACGTGCCGGAAGATGTATAGAGTACGTAGCTAAGCTAGGTAGGTCGTCATGCATGGCCATGTG
ATGTGACCATGACTC-GT---TCCCTCTAAAAAGACACAGCTGCTAAATT------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr5A_1
AAACTGCAGTCAAATATCTTATTTACCTAGCTTCATCATTCATAGTATAAACAA-TCAACTAAAATGCACGATTCACCGT
CTTAATCACCTACTTTAGCATCATGTTCCTACATCATTACTAGTAATTGTTTACTA------------------------
--------------------------------------------------------------------------------
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-----------AACTATCCGCAGACACACATTTCTTTTCAAGCTGTC-GCATTTGCATTAGCAAACATGCCACGACACCG
T------------------TGGAAATTTGGAGGCTCTTTTTCTCTGTCAAATCAAAGCAAAAAG---AGCCGCTCCCCGT
CCGTCCAGCCTTGTCCTTCGCTGGCCAGGAGTTGGGTTGAGGTTGTGGGCCACTCGTCGTTGTGTGTGTCGGTGCCGCCA
AGATCTCAATCTGGGTGTTGCAAGGATTCCAATGTCTGCGCCTCTTTGGTGTCTGCTTTGGAGTCGCAGCTTGCCCTGCT
GCGCACGGAGCTCCTTTAGGAGGTTGAGCTGCTCCGCACTGAGCTTCGCGACGCTCTAGCCAAGTTTGAGGTTGCATCGG
TTGTGCCTTTGCTGCTTGAGCTCCAGGTTGGTTCCATTGATGAGGATGCTGAATGTTGCTTTGGAGATTTTTCTCCTCGT
GCTCTGCATGTGACGCCGCTTGTTCGTGGGAATGCGGTTATCACGGAGGTCGTAGCTCCAGTTCTGCAGATTATGCCTGA
GTTGCAGGAGCTTTGTGGGGAATCATCTATGGTGTTACCGATGGAGTTGAGCGCATTGGAGTCCTTGGTGGTGGCCATGC
CACCTTCACTACCACCGTCAGAGTCCTATCAGTCGCCCGCCATTCCGGGTTGTGGAGACTTGGTTGGTTCTGTCAATGCC
TCATCTATGGCCATTGTGCATGTGGCGTCTTTGAGTGGTGAGGTTGATGAGATAGGCGTGTTGGCACTTAACTCTGAGGC
TCTTTCATGTGACCATCTGGAGACGCCTGAGTCCATCGTGCCAGTGGTACCCGTGACTGATGATGTTGAGGCGGTTGGTG
CGTTGGCGCCTGATCCTTCGGAGCCCAACCAGTCGCTCGCCTCTGTTGAGCGTGGAGGTTCCGATGTTGCAATCACCCAC
TCGCATGTGACCATTGGGCAGGTTTCTGTGCGTGACAAGTTCAATGAGATTCTCTTCGAAATAGAGCTTCACAGCTTGCT
CAAACGTTTGGAGAGGGTGAGCCCTGGATCTGGCAAGGCGATTGTGGAGGAGGCTCTCAGGAGCAAAGGAAAGAAGAGTG
ACGCTACAAGAAAGGCTTCCGCAGCTGCTTGATGGATGGTTACCAGTCTCTTGGGTTGTCCTTATGGTTTGGCTTGTCTT
CGTGGATTTGGTGGTGCCCGTGGTTTTCGGCAAAGTTACTCTCGTTGGGGTGTCTTCATGTTGTAACAGTGTGCAGGTTG
GTGGACGTTTGGTGTTGGGTATGGTGGTCACTCTGTGAGTAGTCCACTTGTAGTTGGTCTGTATCGGTTTTCGCCTGGTT
TTCCGTTAATTAACTGGGCAATTCTCTTCTGCTTAATTAATTGATGAGGCAAATTTTTTGCCTTCGTTTCACAAAAAAAA
GCAAAAAGAAATCGATAACTTAAAATTTTAAGAGAAAG--------TTCCCAGGAATACAAATACTACTGTATATCTCAG
CAGGGAATCGTGCACGCAGCAAGCAAGGAACAATTGGTGACAGGAAAAGGTAAGACTGTGGAAGTA-TAA---CGCTTGG
CATCGGTATTGGGAT--------TACCATCGTCTTTGTGGTCGACGGCGGAGATTCGATCTGACCATCAGGTGGCCGTTG
GCGCAAATCTTAGCGCACGCAGAAGGTATA--------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
ATATATATGTATGTGGCACGGTCAGGTTGTCCCTGCTTTGCTGTGACAGTACCTGTTGTGAGTTGCGACCATGTCAAGGG
ACAGCCTTCTAATCGGCGCCTCCATGGCTCTGCTCCTCGTGCTTTCCTTCGTCGCATTTTTCTGCTCCAACCGACGGCGA
GCGGCGCAGAGCTCGTCGCGGCAGGGCGTGGCC---------GACATCGAGGCCGGGGACGGCAGGTGCGCCGCTG---C
CGCCGCGGTACTCGACGAGGCCGTCCTGGCCGCGTGCCCGACGACGGTTTACTCCTCGTCAATCCAGCATCAGCATCAGG
CGGCGGCTACCGGTGCACGGCAGGAGCGGACTGCGAAGGAGGAGGCGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCC
GACGGCGACGAGCTGCGGGTGCTGCCCGGCTGCGCGCACGCGTTCCACCGGCGGTGCGTCGACCAGTGGCTCCGGCGGCG
GCCCAGCTGCCCGCTCTGCCGCACGTCGCC-----CCAGAGCACCACCACTGCATGCTAACCGTCACAGCGTCAGCAGGC
CGACCGAGGTAGCCTGTCGGGAGTCGTTCGGGACCGTT--CCGGCCGTATAGTGGCAAGATGTGTCGTACTCAATGCCT-
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-----------------------------------
>chrUn_572
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-------------CTATTAGGAGACACGCTTTTCTTTTCTAGCTGTC-GCATTTGCATTAGCGAACATGCCACGACACCC
TTCCTTCTT----TACTGGTGAATATTTGCAGGCTC-TTTTCTCTGTCAAATCAAAGCAAAAAAAAAAGG----------
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---------------------------------------------------------------TCGATTCA---------
--------------------TAAAAATTGGAGAGAAAG--------GTCCCAGGAATATAAATACTACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAACGAACAATCGATGACTGGAAAAGGTAA--------AAGTA-GAA---CGCCAGG
CATGGCCATCGTCAT--------TACCATTATCTTCGTGGTCGACGGCGGAGATTCGATCTGACGGTGAGCTGGCCGCTG
GCACAAATCTCAGCACACGCAGAAAGTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-TATACACGTATGGGGCACGGTCAGGTTGTCCCTACTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAGCATTCTAATCGGCGCATCCATGGCTCTGCTCGTAGTGCTTTCCCTCGTCACCTTTTTCTGCTCCAACAGACGGCGA
GCGGCGCAGAGCTCGTGGCGGCAGGGCGTGGTC---------GACATCGAGCTCGGGCACGGCAGGTGCGTCGCTGCCAC
CGCCGCGGAGCTCGACGAGGCCGTCCTGGCCACGTGCTCAACGACGGTGTACTCCTCGTCGACCCAG---CATCA---GG
CGGCAGCTACCGGT---------GAGCGGACTGCAAAGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCT
GACGGCGACGAGCTGCGGGTGCTGCCCGGCTGCGCGCATGCGTTCCACCGGCGGTGCGTGGACCAGTGGCTCCGGCATCG
GCCCAGCTGCCCGCTGTGTCGCACGTCGCC-----CCAGAGCACCACCGGTGCATGCTAACCGTCACTGCGTCAGTATGC
CGATCGAGGTAGCCTGTCGGGAGTCGGGACCGTTCGTT--CGGGCCGTATAGCGGCAATATGTGTCGTACTCAATGTCTC
GCATGG----------------------------G---------------------TGCCGGAAGATGTATAGATGTTCT
GTACGTAGCCGCCATGTAGCTAGGGC---------GTAGTACCTAGCCAAGCTAGGTTGGTCGTCATGGCC---------
ATGTGACCATGACTCCGT---TCTCTCTATGAAGACACAGCT--------------------------------------
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-----------------------------------
>chrUn_572
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-------------CTATTAGGAGACACGCTTTTCTTTTCTAGCTGTC-GCATTTGCATTAGCGAACATGCCACGACACCC
TTCCTTCTT----TACTGGTGAATATTTGCAGGCTC-TTTTCTCTGTCAAATCAAAGCAAAAAAAAAAGG----------
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---------------------------------------------------------------TCGATTCA---------
--------------------TAAAAATTGGAGAGAAAG--------GTCCCAGGAATATAAATACTACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAACGAACAATCGATGACTGGAAAAGGTAA--------AAGTA-GAA---CGCCAGG
CATGGCCATCGTCAT--------TACCATTATCTTCGTGGTCGACGGCGGAGATTCGATCTGACGGTGAGCTGGCCGCTG
GCACAAATCTCAGCACACGCAGAAAGTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TATACACGTATGGGGCACGGTCAGGTTGTCCCTACTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAGCATTCTAATCGGCGCATCCATGGCTCTGCTCGTAGTGCTTTCCCTCGTCACCTTTTTCTGCTCCAACAGACGGCGA
GCGGCGCAGAGCTCGTGGCGGCAGGGCGTGGTC---------GACATCGAGCTCGGGCACGGCAGGTGCGTCGCTGCCAC
CGCCGCGGAGCTCGACGAGGCCGTCCTGGCCACGTGCTCAACGACGGTGTACTCCTCGTCGACCCAG---CATCA---GG
CGGCAGCTACCGGT---------GAGCGGACTGCAAAGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCT
GACGGCGACGAGCTGCGGGTGCTGCCCGGCTGCGCGCATGCGTTCCACCGGCGGTGCGTGGACCAGTGGCTCCGGCATCG
GCCCAGCTGCCCGCTGTGTCGCACGTCGCC-----CCAGAGCACCACCGGTGCATGCTAACCGTCACTGCGTCAGTATGC
CGATCGAGGTAGCCTGTCGGGAGTCGGGACCGTTCGTT--CGGGCCGTATAGCGGCAATATGTGTCGTACTCAATGTCTC
GCATGG----------------------------G---------------------TGCCGGAAGATGTATAGATGTTCT
GTACGTAGCCGCCATGTAGCTAGGGC---------GTAGTACCTAGCCAAGCTAGGTTGGTCGTCATGGCC---------
ATGTGACCATGACTCCGT---TCTCTCTATGAAGACACAGCT--------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr5A_584
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-------------------------ACACTTTTATGTTCTAGCTGTC-GCATTTGTACTAGAGAACATGCCACGACACCG
TACCTTCTT----TACTGGCGAAAATTTGCAGGCTA-TTTTCTCTGTCAAATCAAAAGTTAAAA----GCCCATCCTCGT
AAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------AAAATTTGAAGAGAAAG--------ATCCCAGGAATATGAATACAACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAAGGAACAATCAGTGACAGGAAAAGGTAA--------AAGTA-GGA---CG--AGA
CATGGCCATCGTTAT--------TACCATTTCCTTCGTGGTCGACGGCGGAGATTCGATCTGACCGTGAGGTGGCCGTTG
GCGCAAATCTCAGCACACGCAGAAAG--TA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TATATACATATGTGGCACGGTCAGGTTGTCCCTACTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAGCATTCTAATCGGCGCATCCATGGCTCTGCTCGTCGTGCTTTCCCTCGTCACCTTTTTCTGCTCTAACCGACGGCGA
GCGGCGCAGAGCTCGTCGCAGCAGGGCGTGGTC---------GACATCGAGCTCGGGCACGGCAGGTGCGTCGCTGCCGC
AGCCGCGGGGCTCGACGAGGCCGTCCTGGCCGCGTGCCCGACGACGGTGTACTCCTCGTCGACCCAA---CATCA---GG
CGGGGGCTACCGGT---------GAGCGGACTGCAAAGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCC
GATGGTGACGAGCTGCGTGTGCTGCCCGGCTGCGCGCACGCGTTCCACCGGCGGTGCGTCGACCAGTGGCTCCGGCAGCG
GCCCAGCTGCCCGCTGTGCCGCATGTCGCC-----TTAGAGCATCCCCAGTGCATACTAACCGTCACAGCGTCAGCATGC
CGATCGAGGTAGCCTGTCGCGAGCCGGGACCGTTCGTT--CGGGTCGTATAGCGGCAAGATGTGTCGTACTCAATGCCTC
GCATGG----------------------------G---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr5D_589
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTCTTTTCTAGCTGTC-GCATTTGCATTAGCGAACATGGCACGACACCC
TACCCTCTT----TACTGGTGAATA-TTGCAGGCTC-TTTTCTCTGTCAAATCAAAGCAAAAAA----GG----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCGATTCA---------
--------------------TAAAAATTGGAGAGAAAG--------GTCCCAAGAACATGAATACAACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAACGAACAATCGGTGACAGGAAAAGGTAA--------AAGGA-GAAGCGCG--AGG
CATGGCCATCGTCAT--------TACCGTTGCCTTTGTGGTCGACGGCGGAGATTCGATCTGACCGTGAGGTGGCCGTTG
GCGCAAATCTCAACACACGCAGAGAG--TA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TATGTACGTATGAGGCACGGTCAGGTTGTCCCTGCTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAGCCTTCTAATCGGCGCCTCCATGGCTCTGCTCGTCGTGCTTTCCCTCTTCACCTTTTTCTGCTCCAACCGACGGCGA
GTGGCGCAGAGCTCGTCGCAGCAGGGCGTGGTC---------GACATCGAGCTCGGGGACGGCAGGTGCGC---TGCCGC
CGCCGCGGGGCTCGACGAGGCCGTCATGGCCGCGTGCCCGACGACGGTGTACTCCACGTCGATCCAGCATCATCA---GG
CGGCGGCTACCGGT---------GAGCGGACGGCAAAGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCA
GACGGCGACGAGCTGCGGGTGCTCCCCGGCTGCGCGCACGTGTTCCATCGGCGGTGCGTCGACCAGTGGCTCCGGCGGCG
GCCCAGCTGCCCGCTGTGCCGCACGTCGCC-----GCAGAGCACCACCAGTGCATGCTAACCGTCACAGCGTCAGCATGC
GGATCGAGGTAGCCTGTCCGGCGTGGGGACCGTTCGTT--CCGGCCGTATAGCGGCAAGATGTGTCGTACTCAATGCCTC
GTACGGAGCAACTCGGTGACCAATGACCATCTATG---------------------TGCCGGAAGATGTATAGGTGCCCT
GTACGGAGCCGCCATGTAGCTAGGGC---------GGAGTACGTAGCCAAGCTAGGCAGGTCTCATGACCAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr5D_594
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TTCTAGCTGTC-GCATTTGCATTAGAGAACATGCCACGACTCCC
TACCTTCTT----TACTGGCGAAAATTTGCAGGCTC-TTTTCTCTGTCAAATCAAAACTAAAAA----CCCGATCCTCGT
AAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAAATTTGAAGAGAAAG--------GTCCCAGGAATATGAATACAACTGTATATCTCAA
CAGGGAATCGTGCACGCAGCAAGCAAGGAACAATCGGCGACAGGGAAAAGTAA--------AAGTA-GAA-TGCG--AGG
CATGGTCATCATCAGTTCATCACTACCATTGTCTTTATGGTCGACGGCCGAGATTGGATCTGAGCGTGAGGTGGCTGTTG
GCGCAAATCTCTGCACACGCAGAAAGTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TATATACGTATGGGGCACGGTCAGGTTGTCCCTACTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAGCCTTCTAATCGGCGCATCCATGGCTCTGCTCGTCGTGCTTTCCCTCGTCGCCTTTTTCTGCTCCAACCGACGGCGA
GCGGCGCAGAGCTCGTCGCGGCAGGGCGTGGTC---------GACATCGAGCTCGGGGACGGCAGGTGCGCC---GCCAT
CGCCGCGGGGCTCGACGATGCCGTCCTGGCCGCGTGCCCGACGACGGTGTACTCCACGTCGATCCAGCATCATCT---GG
CGGCGGCTACCGGT---------GAGCGGACGGCAAAGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTGGCGGAGTACGCA
GACGGCGACGAGCTGCGGGTGCTCCCCGGCTGCGCGCACGCGTTCCATCGGCGGTGCGTCGACCAGTGGCTTCGGCAGCG
GTCCAGCTGCCCGCTGTGCCGCACGTCGCC-----TCAGAGCACCACCAGTGCATGCTAACCGTCACAGCGTCAGCATGC
CGATCGAGGTAGCCTGTCGCTAGTCGGGACCGTTCGTT--CCGGCCGTATAGCAGCAAGATGTGTCGTACTCAATGCCTC
GCATGG----------------------------G---------------------TGCCGGAAGATGTATAGATGTTCT
GTACGGAGCCGCCATGTAGATAGGGC---------GGAGTACGTAGCCAAGCTAGGTTGGTCGTCATGGCC---------
ATGTGACCATGACTCTCTCTCTCTCTCTATGAAGACACAGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chrUn_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------TGCCACGACACCA
TTCCTTCTT----TACTAGTGAATATTTGCAGGCTC-TTTTCTCTGTCAAATGAAAGCAAAAAA---AGG----------
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---------------------------------------------------------------TCGATTCATAAAAG---
--------------------------TTGGAGAGAAAG--------GTCCCAGGAATATAAATACTACTGTATATCTC-A
CAGGGAATCGTGCACGCAGCAAGCAAGGAACAATCGGCGACAGGAAAAGGTAA--------AAGTA-GAA-CGCG--AGG
CATGGCCATCGTCAT--------TACCATTGCCTTTGTGATTGACGGCGGAGATTCGATCTGGCGGTGAGCTGGCCGCTG
GCACAAATCTCAGCACACGCAGAAAG--TA--------------------------------------------------
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-TATATACGTATGGGGCACGGTCAGGTTGTCCCTACTTTGC------------------GAGTTGCGACCATGTCAAGGG
ACAACATTCTAATCGGCGCCTCCATGGCTCTGCTCGTCGTGCTTTCCCTCGTCACCTTTTTCTGCTCCAACCGACGGCGA
GCGGCGCAGAGCTCGTCGCGGCAGGGCATGGTC---------GACATCGAGCTCGGGCACGGCAGGTGCGCC---GCCGC
CGCCGCGGGGCTCGACGAGGCCGTCTTGGCAGCGTGCCCGACGACGGTTTACTCCTCGTCAATCCAGCATCAGCATCAGG
CGGCGGCTACCGATGCACGGCAGGGGCGGACTGCGAGGGAGGAGGAGCGCGGGTGCGCGGTGTGCCTCGCGGAGTACGCC
GACGGCGACGAGCTGCGGGTGCTTCCTGGCTGTGCG--------------------------------------------
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-----------------------------------
>SNPs
----------------------------------------------------S-----------S---------------
--------------S--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------S---S--------------------S-S--------------------------------
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-----------------------S-------------------------S------------------------------
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--------------------------------------------------------------------------------
------------------------------SSSS----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------S----------S-----------
--------------------------------------------------------------------------------
S-----------------S-------------------------------------------------------------
---S-----------------------------S---------------------------------------------S
S----------S--------------------------------------------------------------------
--------------------SS-----------------S----------------------------------------
------------S---------S-----S---------------------------------------------S-----
-----------------------------------------------S-S------------------------------
-------------------------------------------------------S-S----------------------
---S-----S-------------------------------S--------------------------------------
------------------------------------------S--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_185
--------------------------------------------------------------------------------
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-----TCATGCATGCCAACTGGACA-------------------------------------------------------
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-----------------------------------
>reverse_3250
--------------------------------------------------------------------------------
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-------------------------------------------------ACGGCAAGATGTGTCGTACT-----------
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-----------------------------------
