>input_sequence_78974
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-------------------------------------------ATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTC
CGTCG------CCGTCGCCGCACCACTACCGCGGCCGGTTACGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTC
GAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGTCGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGA
CGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATCCTAGCGTCGCCGCGGTACACGGGGGCAGGGAGCTCGCCGG
CGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGGGACATACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTAC
GCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAACCCGCCGGAACCGGCGCTGGCGCAGCCCGCTCTGCCGCCT
CCTGTTCGGCTGCCTCAGCTTCATCGGAGCACTCTTCCGGCCGTGA----------------------------------
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>chr5A_1_TraesCS5A01G126000
CTTTACAGAGGGG-TACCAAATAAATGCTTAACAATAGGATGATAGGTAAATCATGATGACTGCTTACAAAAACTTACTA
AAATTTTATCACACCAATGTA-----------------------------------------------------------
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--------------------------------------------------------------------------ATAATA
AATGTGCAATTACAGGATAATCTACTAAAAAAATTACGTGTTGCAACGCGTAGGCAATTATCTAT---------------
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-----------------------------------------------------CTATACAAATGGTTGAGACTAGCAGCG
AACGTGCAGTGATGAAAACCTGAATGTACCCTTAAAAGCCTCTAGTGGTCGAATATGTTCCTAATATTTCTTACTGTACA
TTTCTTATAAGTTATAACTACTACTTTTTCGCAAAAAAAGTTATAACTACTACTTCCTCCGTTCATAATAAGATATTTTG
AATATTTCAATATAGCCTATATACAGATTGAAATGAATAAACAAACACAC--TAAAATATGTCCATATACATACGATTCA
GAA--------------------AAAAAATCAAAA-CACCTTAGTTAGCACTCCCTCCTTCCCATCTTATATTATG---G
GACGGAGGGAATATTCGGAGTAT-----TTTTTTAC-TGTAAATCTACCATAAGACACAGGGAATATTTAATTTCTGATG
CTATATATAGTCCCTAAAAAGCAGCTAAAACGCCCAAAATCCCCACGGAGAAACACAGCCCCATGGAGAAGGACAACGTT
CACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCGGGCCCACAC---CTCCACCCGAAGCCGATCTGACGAGCCG
TTCCGGGCCCAGGCACTACTCACAACTCCCTCCAAACAAATTGTATATTT----TGAAGTCCTTAAAACCTT--TTTGTG
CTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAACTATTTCCCAATTTATATACTCGAGTGAATTTGCTTCCCCCTCT
CTACCCCCCCTCTCTCTCTCTCTCCTCTCTCCCGTTCAAAGTCGTCGTCTTGCTCTCGAGCTGCTTGATTCGATTCTTAT
CAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCGGTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTC
CGTCG------CCGTCGCCGCACCACTACCGCGGCCGGTTACGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTC
GAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGTCGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGA
CGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATCCTAGCGTCGCCGCGGTACACGGGGGCAGGGAGCTCGCCGG
CGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGGGACATACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTAC
GCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAACCCGCCGGAACCGGCGCTGGCGCAGCCCGCTCTGCCGCCT
CCTGTTCGGCTGCCTCAGCTTCATCGGAGCACTCTTCCGGCCGTGACTTCTCCTGACGGCGC--ACCTCCATGCGGTTCT
TGTTGCACCTCCGTGAATTCTCTTTGATTTCTCTTTTCTTCTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTGCC
GGCTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTAGGATTAGACACAAAGAGGAATGATAGCAACAAGAGAAATG
ATTAATGTCATACTACTAACAAAGCTGATTAGTCGTCATGAACTCATGATTGATGCAATAATGG-------AATGATCAG
AACACAAGCATGTGGAGGAAAACAATTGAAGTAAATTGATCCGG-AAAAAAAGAGACAATAAATTGCTGTCACCACAAGT
CTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAATTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCA
ATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACAATCATTTCCTTACACCGGTGTAAAATTCCATCCCTCTCCT
CTAATAGTCCTTGTCATTATGAGCTCGCCGGGGCTTAGGGTTGATGGCCGCGCGCAGAACTTCAGCGACAACTGCAGCAT
CAGGGTTGTCAAAGAGAGATTCCTGCGGCGGCGATGGCGGCCGACGTTTAGTCGCAAAGGGACTCCAGCTAGACTTCTTA
TTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAACTGCTGTCAATACCACTTGTGCTCAAATTGTTTCCAGTGCA
TTGTATCTTATCATATGATTCGTGCACGTGATTTCTATAGCTGACAGGCAGGATGTTCAGGATATTTATCAGATAACAAC
ATAC----------------------------------------------------------------------------
--------ATACTTGATTATATGAGGGAATTCCAGTTTTTACCCCTGGTTTCACGTTTGTGGTAGGTTTTACCCCATTTA
GCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAAATTACCCCATTTCATTTTATTTTTTATTACTCTGCTGACTGTGT
ATATGCCACGTAGATGGTTC
>chr5D_1
CTTTACAGAGGAAGTACCAATTAAATGCTTAACAATAGGATGATAGGTAAATCATGATGACTGCTTACAAAAACTTACTA
AAATTTTATCACACCAATGTAATAATAAAGGAAAATGCTTATTTTTGCCCGACTGATCCCACGCGATTTTAAGCTGTGTT
GAGCGATCGACACGTGTCCCTGAGCTAGGCCCACATGCCGCTTATCCTTCTCACTTATCCCGCAGCGAGGAGCATAACCA
CACATTCTCTCCCTGTATACTTCGTCTTCCTCGTCTCTGTTTTCTCCTCCTTCTGCGGGCCTCTCTCATTTGCCTTCCTG
TCTCTATAGATCGGGGCCAACGCCAGCAAGTCCAGCGCTGCTGCAAGCCTATCCTCCTGTTGGTATGCATCGTCAAGTGG
ACCACCATTTTTCTGCAGCCGCTGCGCTCCTGTCCGCCGCTGCAAAGGGCCGTCGCTCGCCATTGTTGCCGCAGTGGGGT
GCTGCAGCCGGGGGGCACGTGCCGGGGGGCGCGTGCCGACGGTCCCTAGTGCTGGACGGGCAACGAGCGGTCGCCGTAGG
TGCTGCAACTGGGTTTGCCGCGACGCTGCCTACAATGCAGCGGGGGCCACGCTCGTGCACTGGGGCCGGTGACTCACGGT
GCTGCGTTGCAGCGGCCACCGCCGGCTCCTCGAAGCTGCAAGGCAGCGCTTGTCGGCGGCTTCGGTGCCGCAATACAGAG
GTTGCCAGAGGCTCCACTGCGGCGGTCGTCGTTGGCTCTCGAAGCTCCGATAAAGCGCTCGCGGGCAACTCCGACGTTGC
AATGGAGCGCTCGTCGGCGACTACGAGGCTGCAATGGAGCGCTCGCCGGCGACTACGAGGCTGCAATGGAGCGCTCGCCG
GTTCCGATGCAGCGGTCGTTGTCGGCTCTCGAAGCAACAATGGTCCGCCGGCTCCGATGCTGTAATGGAGCGCTCACTGG
CGGCTCTGGTGTTGTGATGCAGCGCTCGCTGGGCTCTCCAACGGCTCCCCGGTGCTGTGATGCGACGGCGGTGATACTAC
GACATCAGCAGCGCCGTGACCGTGGTGGTTTTGCACGACATCATATGCTGGGGAGGGTTGTTAGAATGCCCCGACGGCGA
GCCGCTCCGCCGAGGACGACGCGGATGTAGCTTTTCGGAGCATCACCGGTCGAGGCGGCCAGACCATTATCGTTGCTGCA
ATCAAGCATCTCCGAGCTGCCGGAGCATCGTCAGTGTTGTGTTGGAGCATTGCTGAGCCGCCGGAGCATCGCCGGTGTTT
TGTTGGAGCATTGCCGAGCCGCCGGAGCATCGCCGGTGCTACAACGAAGCATCGTCGGTGTTGTGTTGGAGCATTACCGG
GCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTGCTACAACGAAGCATTGCCTGTGCTACAACAAAGCATCGCCGGT
GTTATGTTGGAGCATTACCGGGCCGTCGGAGCATCGCCGGCGCTGCAACGAAGCATCACCGGTGCTGCATCGAAGCATCA
TTGGTGTTGTGTTGGAGCATCGTTGGGCCGCCGGAGCATCGCTGGTGCTGCAACGAAGTATCACAGGTGTTGTGTTGGGG
CATTGCCGGGCTGCCGTAGCATCGCAGGTGCTTCAGTGGAGCATCACCAATGCGTCAAGGGATGGTCGTGGCAGCGTCGT
TGTCGCAACTCGCAACCTGGCGCTGCACCTGAGGTCGTGCATGGCGAGCTCGTGGGCGTTTTCCTGTGAGATGACCTATA
ACAGAGCCGCCGCAACCTGAAGAAACGAGGACGTTGTGCACATAGCCGATAGCTAGCTGGTCTAGAGATCGAACGACCCA
AACCAAACCAAATCAACGGCTGGCAAGGCGGTTTAAAAATCCCCAACATCAGCCGGTTTATGGCTAGCAGTGGCATAATA
AATGTGCGGTTACAGGATAATCTACTAAAATATTTAC-------AACACCTAGGCAATATTATCTACTCTCTCTGTTTTA
AATATAAGTTTTTTTAGAGATTCCACTACAAACTACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCATTGAT
TCTGCTTCGTATATAGTCCATAATGAAATCTCTAAAAAAAACTTATATTTAGACTATACAAATGGCTGAGACTAGCAGCG
AACATGCAGTAATGAAAACCTTAATATATCCTTAAAAATCTCTAGTGGTCGAATATGTTCCTAATATTTCTTACTCTATA
TTTCTTATAAGATATAACTACTACTT-----------------------------CCTCCGTTCACAATAAGATATTTCG
AATATTTCAATGTAGCC--TATACAGATTGAAATGAATAAACTAA--------AAAAAGTCTGTATATACATGTAAAGTT
TTTTTTGACGGGTATATACATGTAAAGTT--AAATCCATCTTAGTTAGCACTCCCTCCGTCCCATCTTATATTATG---G
GAGGGAGTATTTGTGAAAGGATGGAGTATTTTTTAC-TGTAAATCTACCATAAGACGCAGGGAATATCTAATTTCTGATG
CAATATACAGTCCCTAAAAAGCAGCTAAAACGCCCAAAATCCCCACGGAGAAACACAGCCCCATGGAGTAGGACAACGTT
CACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCGGGCCCACACCTCCTCCACCCGAAGCCGATCTGACGAGCCG
TTCCGGGCCCAGACACTACTCACTCCTCCCTCCAAACAAATTGTATAATTATTTTGACGTCCTTAAAACCTTTTTTTGTG
TTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAGCTATTTCCCAATTTATATACTCGAGTGAATT-GCTTCTCCCTCT
CT---CCCTCTCTCTCTCTCTCTCCTCTCCCCCGCTCAAAGTCGTCGTCTTGCTCTCGAGCTGGTTGATTCGATTCTTAT
CAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCGGTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTC
CGTCGCCGTCGCCGTCGCCGCACCACTACCGCGGCCGGTTGCGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTC
GAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGTCGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGA
CGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATCCTAGCGTCGCCTCGGTACGCGGGGGCGGGGGGCTCGCCGG
CGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGAGACATACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTAC
GCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAACCCGCCGGAACCGGCGCTGGCGCGGCCCGCTCTGCCGCCT
CCTGTTCGGCTGCCTCAGCTTCATCGGCGCACTCTTCCGGCCGTGACTTCTCCGGACGGCGCGCACCTCCATGCGGTTCT
TGCTGCACCTCCGTGAATTCTCTTCGATTTCTCTTTTCTTCTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTTCC
GGTTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTAGGATTAGACACAAAGAGGAATGATGGCAACAAGAGAAATG
ATGAATGTCATACTACTAACAAAGCTGATTAGTCGTCATGAACTCATGATTGATGCAATAATGG-------AATGATCAG
AACACAAGCATGTGGAGGAAAATAATTGAAGTAAATTGATCGGGAAAAAAAAGAGACAATAAATTGCTATCACCACAAGT
CTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAATTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCA
ATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACAATCATTTCCTTACACCGGTGTAAAATTCCATCCCTCTCCT
CTAATAGTCCTTGTCATTATGAGCTCGCCGGGGCTTGGGGTTGATGGTCGCGCGCAGAACTTCAGCGACAACTGCGGCAT
CAGGGTTGTCAAAGAGAGATTCCTGCGGTGGCGATGGCGGCCGACGTTTAGTCGCAAAGGGACTCCAGATAGACTTCTTG
TTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAACTGCTGTCAATACCACTTGTGCTCAAATTGTTTCCAGTGCA
TTGTATCTTATCATATGATTCGTGCACGTGATTTCTATAGCTGACAGGCAGGATGTTCAGGATATTTAACAGATTACAAC
ATAC----------------------------------------------------------------------------
--------ATACTTGATTATATGAGTGAATTCCAGTTTTTACCCCTGGTTTCACA--TGTGGTAGATTTTACCCCATTTA
GCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAGATTACCCCATTTCATTTTATTTTTTATTCCTCTGCTGACTGTGT
ATATGCCACGTAGATGGTT-
>chr5B_2
-TTTACAGAGGGATTACCAAATAAATGCTTGACAATAGGATGACAGGTAAATCATGATGACTGCTTACAAA-ACTTACTA
AAGTTTTATCGCACCAATGTAATAATAAA---------------------------------------------------
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--TGTGCAATTGCAGGATAATCTACTAAAATATTTACGTGTTGCAACATGTAGGCCATTATCTAT---------------
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-----------------------------------------------------CTAT--AAATGGTTGAGACTAGCAGCG
AACGTGCAGTAATGAAAACCTGAATATATCCTTAAAAATCTCTAGTGGTCGAATATGTTCCTAATATTTCTTACTATGTA
TTTCTTATAAGTTATAACTACTACTT-----------------------------CCTCCGTTCACAATAAGATATTTTG
GATATTTCAATGTGGCCTATATACAGATTGAAATGAATAAACAAACACACATTAAAATATGTCTATATACATGCAACTCA
AAA--------------------AAAGTT--AAAA-CATCTTAGTTAGCACTCCCTTCGTCCCATCTTATATATGGGACG
GAGGGAGTATTTGTGAACAGATGAAGTATTTTTTTATTGTAAATTTATCATAAGATGCAGGGAATATCTATTTTCTGAT-
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>chr5B_591
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------------------------CTAAAACGCCCAAAATCCCCACGGAGAAACACAGCCCCATGGAGAAGCACAACGTT
CACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCGGGCCCACACCTCCTCCACCCGAAGCCGATCTGACGAGCCG
TTCCGGGCCCAGACGCTACTCACTCCTCCCTCCAAACAAATTGTATAATTATTTTGACGTCCTTAAAACCTT--TTTGTG
CTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAACTATTTCCCAATTTATATACTCGAGTGAATT-GCTCCCCC----
CT---CTCTCTCCCTCTCTCTCTCCTCTCTCCCGTTCAAAGTCGTCGTCTTGCTCTCGAGCTGTTTGATTCGATTCTTAT
CAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCGGTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTG
CGTCG------CCGTCTCTGCACCACTACCGCGGCCGGTTGCGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTC
GAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCGCCGTCGTGCCCACCGCCGGGCATCGAGATCCCCAGCAACGACGA
CGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATCCTAGCGTCACCGCGGTACGTGGGGGCGGGGAGCTCGCCGG
CGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGGGACATACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTAC
GCGTACCTGCAGATGACGCCGTCGGCTAGGGAGGACCCAACCCGCCGGAACCGGCGCTGGCGCGGCCCACTCTGCCGCCT
CCTGTTCGGCTGCCTCAGCTTCATCGGAGCACTCTTCCGGCCGTGACTTCTCCGGAGGGCGC--ACCTCCATGCGATTCT
TGTTGCACCTCCTTGAATTCTCTTCGATTTCTCTTTTCTTCTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTTCC
GGCTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTAGGATTAGACACAAAGAGGAATGATAGCAACAAGAGAAATG
ATTAATGCCATACTACTAACAAAGCTGATTAGTCGTCATGAACTCATGATTGATGCAATAATGGAAAGGAAAATGGTCAG
AACACAAGCATGTGGAGGAAAATAATTGAAGAAAACTGATCGGG-AAAAAAAGAGACAATAAATTGCTATCACCACAAGT
CTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAATTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCA
ATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACAATCATTTCCTTAAACCGGTGTAAAATTCCATCCCTCTCCT
CTAATAGTCCTTATCATTATGAGTTCGCCGGGGCTTGGGGTTGATGGTCGCGCGCAGAACTTCAGCGACAACTGCGGCAT
CAGGGTTGTCAAAGAGAGATTCCTGCGGTGGCGATGGCGGCCGACGTTTAGTCGCAAAGGGACTCCAGCTAGACTTCTTG
TTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAACTGCTGTCAATACCACT--TGCTCAAATTGTTTCCAGTGCA
TTGTATCTTATCATATGATTCGTGCATGTGAGTTCTATAGCTGACGGCCAGGATGTTCAGGATATTTAACAGATTACAAC
ATACTCCCTCCGTTCCAAAATAGATGGCTCAACTTTATACAAACTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGA
GGGAGTACATACTTGATTATATGAGTGAATTCCAGTTTTTACCCCTGGTTTCACGTTTGTGGTAGATTTTACCCCATTTA
GCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAAATTACCCCATTTCATTTTATTTTTTATTCCTCTGCTGACTGTGT
ATATGCCACGTAGATGGTTC
>SNPs
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------------------------------S-S--------------S--------------------------------
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----------S--------------S--S--------SS------------------------------------S--S-
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--------------
-----------S---------------------------------------------------S--------S-S-S---
S-------------------------SSSSS-------S-------------------S---------------------
--S----SSSS-S-SSSS--SSS---------------------------------S----------S------------
-S-----S------------------------------------------------------------------------
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------------S----------SS----------------------S---------S----------------------
-------------------------------------------------------------------S------------
--SSS---S------------------------------------------------------S----------------
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----------------------------------------S---------------------------------------
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----------------------------------------------------------S-------S-------------
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---------------------------------------------------------------S----------------
-----------------------------------------------------S--------------------------
------------------------S----------------------------------------------------S--
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----------------------S------------------S--------------------------S-----------
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------------------------------------S----------S---------------------------S----
----------------------------S--------------------------------------------------S
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--------------------------------------------------------------------S-----S-----
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-------------------------S---------------------------------------S--------------
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>forward_2818
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------------------------------------------------------------------------------GG
GACGGAGGGAATATTCGG--------------------------------------------------------------
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>reverse_4480
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-------------------------------------------------------------------------------A
TTCCTCTGCTGAACACGCA-------------------------------------------------------------
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