>input_sequence_78968
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------------------------ATGCATCCCAAACCCAAA------GCAC---TAG---CTACATATCCTACTCAAGC
ACACGC-----TCACGATGGCATCCAGAGCTGCTACCTTCGTCGCCCTGAGCCTCCTC---TCCGCGGTCGCCACGCACG
G-TGCGGAC---CCTACTGCCAGCCGCCAGTCGTCGTGCCGACGCCGCCCGTTGTCGTTCCGACGCCATACCATGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCCATCGACGCGCTAAAGCTGAGGGCGTGCGCCAACGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTTGGCGTGCCGGCGCGCGACGAGTGCTGCCCGCTGCTCCACGGGTTGGTCGACCTTGACGCCGCCG
TCTGCCTCTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCACCTCGACGTGCCCGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGCCCATTAA--------------------------------
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>chr4A_1_TraesCS4A01G412800
TTGATGGTACTATCAAAGATAACATC---GTTCTAGCCGGTTCAGTATTGGTCTCACATGGAGGTAG-------------
--CATAAACTTCGATGTCGGCTTACATTCCGGTATGGTGGCTATGTGTGTC------CATATTATTATGGCCTCCACTAT
AAATCTGATGTCAGATTTTTTTATCATGATAAATCAAACATTTTTCATCGTAAATTATGTTCTC------TGGCAAG-TT
TAGTTGGCGAGCATGGCAAATCCTCTTCAGTTCGTTTTTTTCAAAAATTACTGTGC-TTGCAAGTTAAATTTGCCATCAT
CATGCAATATAAGTTGCCATGAAAAATGTCAGATTTATCATGTCTAACGTCTGAT-------TTTTAGGTGTTTCTGATT
ATTATTTCCTTGTCCACTGCGCCCCGCGCGCATCGCTAACAAAGTCCAAGCGCTCACACC-------TTATTCCTCAACT
TGCTTACATAATCTTGTCCTTTTTAATCTAAAATATGCTGTGTAGCATCACAAAGGTTGGCT------TAACATGGATGA
ACATGCAAGAGCATTGCTCAACTTGTTGCCGTAT----CTTCAGGAATAATATTCCAAAACCATCAGTCCGTGATCATGC
TAAAATCCCGCCGTATCAAACAAATGATACACGCAGAGGACAACCTAGCAGTCTCGAAGCCGATCGAATCGCACATGGCC
ATGTAT----GACGATCGATCATGCATACATACCTGGATTCGGCTTGCCTGCTCCCTCCCATGCTCCCATCCGTGCATCC
ACTCCATCTTACGGCTGTCTTTTTCTTTTTCTCTTTCTAATCTAATCATTTCCCCTCCTGATTTTAAGGGAGTGGGAACG
GGCCTTATTTTGTTCCAATCAAATCATGCCACGTATGCGGGAGCACGGATGGGCGCACGCCGAGAAGCAGGCAAGTCTCG
TCCTACATACCTAAGCTATTACGCCGAACAGCTTGATCCCATGCAC--CACGCATCCATGCATAT-CACC-CGGCTATAA
ATACACCACTCTCTCCAAGCTCTCATGCATCCCAAACCCAAA------GCAC---TAG---CTACATATCCTACTCAAGC
ACACGC-----TCACGATGGCATCCAGAGCTGCTACCTTCGTCGCCCTGAGCCTCCTC---TCCGCGGTCGCCACGCACG
G-TGCGGAC---CCTACTGCCAGCCGCCAGTCGTCGTGCCGACGCCGCCCGTTGTCGTTCCGACGCCATACCATGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCCATCGACGCGCTAAAGCTGAGGGCGTGCGCCAACGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTTGGCGTGCCGGCGCGCGACGAGTGCTGCCCGCTGCTCCACGGGTTGGTCGACCTTGACGCCGCCG
TCTGCCTCTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCACCTCGACGTGCCCGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGCCCATTAACGAACGCGTACTGTTGC----AACTGCACGGG
CGCCGCCCAATAAGATTTGCTTTTGGTCCGTACG----------------------------------------------
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------------------------------------------------------------------------TCGTTGTT
ATTTT-CGTG--------------------TCCGCATTTGAATCGTTGTAACCAGCACTACTCTTTTTGTTTTTTGGCGA
-------------------------ACAACCATGTGCTCTTCGTATT-GAT-----------------------------
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---------------------------------------------ATATATCATCAGTGAGCAATAAATATTGCTCTAGT
TAATTGCCCTTTTG--TTTTCTTTCTGAA--ACACAAGTACTGATC----TAGACGCGCGCGCGCACATACACAT-----
TGTAGCTTCTTCATTTTTGAAAACTAGATGACGCCTTACCCCGCAAAAAAAAGAACTAGATGACGCCTCACACGTTACTG
CGGGAGCCATGCCAAAACAAATGTGTAAATAGGTGTTTAAATATATGTAAAATGATGAAAAACAATTGTACTAATAGTTA
TCTGTTTACATCAATTTGCCGCAAACACAGTGAGGCCACGCGCAGGCGTGGCTGGCTGAGGAAATCTCCTATACCACTAA
TCTCCAGTTATCCCTTTGGAAGTTGGAATTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAGATCGGGCCTGATGTTCTTTTTTCTCCGAAATTCCTCCGGC
CGATGCAGGCCTTCTGTCTCGCCCATCTCTGGTTGTGACAACCCATCTCCTCCCATGCCCATAGTGGACCTCATGCCATA
TTCTTCTCCCCCTTCACTGGATCC
>chr4B_2
-TGATGGTACTATCAACGATGAACACACGGTTCTAGCTGGCTCAATATTGGTCTCACATGGAGGTAGGCAGGTACTAGCT
AGCATAACCCTCGGTGTCGGCTTACCTTCCGGTACGGTGGCTATGCGCGCCCATATGCATATCATTATGGACTCCACTAC
CAATCTGATTTCAGATTTTTTAC-CATGGTAAATCAAACATTTTTTATGGCAAATAGTGTTCTTCGAGGATGGCAAGTTT
TAGTTGGCAAGCATGTCAAATCCATCCCAGTTTATTTTACTAAAAAATTGCCGTGTTTTGCAAACTAAATTTGTCATAAT
TGCACAATATAAATTGCCAT-AAAAATGTCAGATTTGTCATGCCTACATTTCTAACATCAAATTTTTAGTGTTTCCAATT
ATTATTTCCTTGTCCATTGCGCCGCGCGCGCATCGCTAATGAAGTCCAAGCGCTCACACCGCATGGTTTAATTCTCAACT
TGCTTGCATAATCTTGTCCTTTTTACTCTAAAATATGTTGTGTAGCATGACAAGGTTGG--------CTAACATGCATGA
ACATGCAAGGGTATTGCTCAACTTGTTGCCGTAT----CTTCAGGATTAATATTCCAAAACCATCGGTCCCTGATCATGC
TAAAATCTCGCCGTATCAAACAAATGATACACCGAGAGGACAACCTAGCAGTCTCGAAGCCGATCGAATCGCACATGGCC
ACGTACGTCCGATCATGCA-------------------------------------------------------------
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---TACATGCCTACGCTACTACGCCAAACAGTTCGATCCCATGCATTGCATGCACGCATCCACAT-CCCCATGGCTATAA
ATACAACACTCTCTCCAAGCTGTC-TGCATCCCAAACCCAAA------GCAC---CAG---CTACATATCCTACTCAAGC
ACACGC-----TCACGATGGCATCCAGAGCTGCTACCTTCGTCGCCCTGAGCCTCCTCCTCTCCGCGGTCGCCACGCACG
GCTGCGGAC---CCTATTGCCAGCCGCTAGTCGTCGTGCCGACGCCGTCCGTTGTTGTTCCGCCGACGTACCACGGAGGA
GGAGCGCACGGCCACGGC---GCGCAGTGCTCTATCGACGCGCTAAAGCTGAGGGTGTGCGCCAACGTTCTCGACGGCCT
GCTCGGCCTCAAGGTCGACGTTCCGGCGCACGACGAGTGCTGCCCGCTGCTCCAGGGGTTGGTCGACCTTGATGCCGCCG
TCTGCCTGTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCATCTCAACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCAGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGGCCATTAACGGACGCTTACTACTGCACGTACG----GG--
---CGCCGAATAAGATTTGCTTTCGATCCGTACT----------------------------------------------
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------------------------------------------------------------------------TCATTGTT
ATTTT-CGTG--------------------TCCACATTTGAATCGTTGTTACCAGTGCTACTCCTCTTG-TTTTTGGCAA
-------------------------ACAACCATGTACTCTTCGTATT-GAT-----------------------------
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---------------------------------------------ATAT--CATCAGTGAGCAA-AATTATTGCTCTAGT
TAATTGTCCTTTTT--CTTTCTTTCTGAA--ACACAAGTA-TGATC----TAGACGCGCGTGCACACATATGCATACACA
CGTAGCTTCTTCGTTTTTAGAACTA-------------------------------------------------------
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------------------------
>chr4D_34
------------------------------------CCGGCTCAATATTGGTCTCACATGGAGGTAG-------------
--CATAACCATCGATGTCGGCTTACCTTCCGGTACGGTGGCTATGCGCGCCCATATGCATATTATTATGGACTCCACTAC
CAATCTGATTTCAGATT---TAC-CATGGTAAATCAAACATTTTTCATGGCAAATAATGTTCTCTGAGGATGGCATG-TT
TAGTTGGCAAGTATGTCAAATCCATCCCAGTTTATTTTAGCAAAAGATTGCAGTGCTTTGCAAACTAAATTTGTCATAAT
TGCGCAATATAAATTTCCAT-AAAAATGTCAGATTTATCATGCCTAAATTTCTAACGTCAAATTTTTAGTGTTTCCGATT
ATTATTTCCTTGTCCATTGCGCCGCGCGCGCATCGCTAATGAAGTCCAAGCGCTCGCACCGCATGGTTTAATTCTCAACT
TGCTTGCATAATCTTGTCCTTTTTAATCTAAAATATGTTGTGTAGCATGACAAGGTTGG--------CTAACATGCATGA
ACATGCAAGGGTATTGCTCAACTTGTTGCCGTATATATCTTCAGGACTGATATTCCAAAACCATCAGTCCCTGATCATTC
TACAATCTCGCCGTATCAAACAAATGATACACCCGGATGACAACCTAGCAGTCTCGACGCCGATCGAATCGCACATGGCC
ACGTACGATCGATCATGCA-------------------------------------------------------------
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---TACATGCCCAAGCTACTACGCCAAACAGCTTGATCCCATGCAC--CACGCATCCATGCATAT-CCCC-CGGCTATAA
ATACAACACTCTCTTCAAGCTCTCATGCATCCCAAACCCAAA------GCAC---TAGTAGC----TATCCCACTCAAGC
ACACGC-----TCACGATGGCATCCAGAGCTGCTACCTTCGTCGCCCTGAGCCTCCTCCTCTCCGCCGTCGCCACGCACG
GCTGCGGAC---CCTATTGCCAGCCGCCAGTCGTCGTGCCGACACCGCCCGTTGTCGTTCCGCCGCCGTACCATGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCTATCGACGCCCTAAAGCTGAGGGTGTGCGCCAACGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTCGGCGTTCCGGCGCACGACGAGTGCTGCCCGCTGCTCCAGGGGTTGGTCGACCTTGACGCCGCCG
TCTGCCTGTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCACCTCAACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGCCCATTAACGGACGCCTACTGCT-C----ACG----GG--
---CGCCGAATAAAATTTGCTTTCGATCCGTACG----------------------------------------------
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------------------------------------------------------------------------TCGTTGTT
ATTTT-CGTG--------------------TCCACATTTGAATCCTTGTAACCAGTACTACTCTTTTTGT----------
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------------------------
>chr4B_114
--------------------------------------------------------------------------------
---------------------------------------------------------CATATTATTATGGACTCCACTAC
CAATCTGATTTCAGATTCTTTAC-CATGGCAAATCAAACATTTTTCATGGCAAATAATGTTCTCCGAGGATGGCATG-TT
TAGTTGGCGAGCATGCCAAATCCATCCCAGTTTATTTAC-CAAAAAAATGCCGCGCTTTGCAAACTAAATTTGTCATAAT
CGCGCAATATAAATTGCCAT-AAAA-TGTCAGATTTATCACGCCTAAATTTCTAACGTTAAATTTTTAGTGTTTCCTATT
ATTATTTCCTTGTCCATTGCGCCGCGCACGCATCGCTAATGAAGTCCAAGCGCTCACACCGCATGGTTTAATTCTCAACT
TGCTTGCATAATCTTGTCCTTTTTAATCTAAAA-ATGTTGTGTAGCATGACAAGGTTGGCTAACAGCCTAACATGCATGA
ACATGCAAGGGTATTGCTCAACTTGTTGCCGTAT----CTTCAGGATTAATATTCCAAAACCATCGGTCC-TGATCACGC
TAAAATCTCGCCGTATCAAACAAATGGTACACCGAGAGGACAACCTAGCAGTCTCGAAACCGATCGAATCGCACATGGCC
ACGTAT----GATCATGCA-------------------------------------------------------------
--------------------------------------------------------------------------------
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---TACATGCCTAAGCTACTACGCCAAACAGTTCCATTCCATGCAT-----GCACGCATCCATATACCCC-TGGCTATAA
ATACAACACTCTCTCCAAGCTCTCATGCATCCCAAACCAAAA------GCAC---CAG---CTGCATATCCTACTCAAGC
ACACGC-----TCACAATGGCATCCAGAGCTGCTACCTTCGTCGCCCTGAGCCTCCTCCTCTCCGCGGTCGCCACGCACG
GCTGCGGAC---CCTATTGCCAGCCGCCAGTCGTCGTGCCGACACCGCCCGTTGTCGTTCCGCC-CCGTACCACGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCTATTGACGCGCTAAAGCTGAGGGTGTGCGCCAACGTTCTCGGCGGCTT
GCTCGGCCTCAAGGTCGGCGTTCCGGCGCACGACGAGTGCTGCCCGCTGCTCCAGGGGTTGGTCGACCTTGATGCCGCCG
TCTGCCTGTGCACCGCCGTCAGAGCCAACGTCCTCGGCATCCATCTCAATGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCACAGGCCATTAACGGACGCGTACTGCTGC----ACC----GG--
---CGCCGAATAAGATTTGCTTTCCATCCGTACT----------------------------------------------
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------------------------------------------------------------------------TCGTTCTT
ATTTT-CGTG----------------------------------------------------------------------
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>chr4A_492
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--------------------------------------------------------TGG--------TTAACATGGATGA
ACATGCAAGGGTATTGCTCAACTTGTTGCCGTAT----CTTCAGGAATAATATTCCAAAACCATCAGTCCCTGATCATGC
TAAAATCCCGCCGTATCAAACAAATGATACACCCAGAGGACAACCTAGCAGTCTCCAAGCCGATCAAATCGCACATGGCC
ACGTAT----GATCATGCA-------------------------------------------------------------
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---CACATGCCTAATCGACTATGCCAAACAGTTCCATCCCATGCAT-----GCACGCATCCAGAT-CCCC-CGGCTATAA
ATACAACACTCTCTC-AAGCTCTCATGCATCACAAACCCAAACCCAAAGCAC---TGT---C----TATCCTCCTCAAGC
ACACGC-----TCACGATGGCATCCAGAGCTGCCATCTTCGTCACCCTGAGCCTCCTCCTCTCCGCCGTCACCACGCACG
GCTGCGGAC---CCTACTGCCAGCCGCCAGTCGTCGTGCCGACGCCGCCCATTGTCGTTCCACCGCCATACCATGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCCATCGACGCGCTAAAGCTGAGGGTGTGCGTCAACGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTCAGCGTGCCGGCGCGCGACGAGTGCTGCCCGCTGCTCCACGGGTTGGTCGACCTTGACGCCGTCA
TCTGCCTCTGCACCGCCGTCAGGGCCAACGTCCTCAGCATCCACCTCGACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGCCCATTAACGGACGCGTACTGCTGC----ACGTACGGG--
---CGCCCAATAAGATTTGCTTTCGATCCGTACG----------------------------------------------
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------------------------------------------------------------------------TCGTTGTT
ATTTT-CGTG--------------------TCCACATTTGAATCCTTATAACCGGTACTACTCTTTTTGT----------
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>chr4D_497
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--------------------------------------------------------------------TAACATGGATGA
ACATGCAAGGTTATTGCTTAACTTGTTGCCTTAT----CTTCAGGATTAATATTCCAAAACCATCAGTCCCTGATCATGC
TAAAATCTCGCCGTATCAAACTAGTGATACACCCAGAGGACAACCTAGCAGTCTCGAAGCCGATCGAATCGCACATGGCC
ACGTAT----GATCATGTA-------------------------------------------------------------
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---CACATGCCTAAGCGACTACG-CAAACAGTTCGATCCCATGCAT-----GCACGCATCCATAT-CCCC-CGGCTATAA
ATACAACACTCTCTCCAAGCTCTCATGCATCCCAAACCAAAA------GCACTAGTAG---C----TATCCCACTCAAGC
ACACGC-----TCACAATGACATCCAAAGCTGCCATCTTCGTCGCCCTGAGCATCGTCCTCTCCTCCGTCGCCGCGCACG
GCTGCGGAC---CCTATTGCCAGCCGCCAGTCGTCGTGCCGACGCCGCCCGTTGTTGTTCCGCCGCCGTACCATGGAGGA
GGGGCGCACGGCCACGGC---GGGCAGTGCTCTATCGACGCGCTAAAGCTGAGGGTGTGCGCCAATGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTCGGCGTTCCGGCGCGCGACGAGTGCTGCCCGCTGCTCCAGGGGTTGGTCGACCTTGACGCCGCCG
TCTGCCTCTGCACCGCCGTCAGGGCAAACGTACTCGGCATCCACCTCAACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCGGCCCATTAACGGACGCGTACTGCT-C----ACT----GG--
---CGCCGAATAAGATTTGCTTTCGATCCGTACT----------------------------------------------
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------------------------------------------------------------------------CCGTTGTT
ATTTTTCGTGAGTTGTGGAACCGTTCCGCTTCCACATTTGAATCCTTGTAACCAGTACTACAACTATTG-TTTTTGGCAA
-------------------------ACAACCATGTGAATTGATATTGAGAT-----------------------------
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---------------------------------------------ATATATCATCAGAGCGCAATCATTATTACTCTAGT
TAATTGCCCAAAATAATTATTTTTCCGAA--GCACAAGTA-TGATG-----AGATGCGCGTGCACACACCCATAC-----
CGTAGTTTCTTCATTTTGGTGAACTA----------------------------------AGAGCCTCTAC---------
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>chr4B_903
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--CTACATACCTAAGCTACTACACCAAACAGTTCGATCCCATGCAT-----GCACGCATCCATAT-CCCC-CGGCTATAA
ATACAACACTCTCTCCAAGCTCTCATGCATCCCAAACCCAAA------GCAC---TAG---C----TATCCCACTCAAGC
ACACGC-----TCACGATGACATCCAATGCTGCCATCTTCGTCGCCCTGAGCCTCCTCCTCTCCGTCGTCGCCACGCACG
GCTGCGGAC---CGTATTGCCAGCCGCCAGTCGTCGTGCCGACACCGCCCGTTGTCGTTCCGCCGCCATACCACGGAGGA
GGAGCGCACGACCACGGC---GGGCAGTGCTCTATCGACGCGCTAAAGCTGCGGGTGTGTGCCAACGTTCTCGGCGGCCT
GCTCGGCCTCAAGGTCGGCGTTCCGGCGCGCGACGAGTGCTG-CCGCTGCTCCAGGGGTTGGTCGACCTTGACGCCATCG
TCTGCCTCTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCACCTCGACGTACCTGTGGACATCAGCCTCCTCCTCAAC
CACTGTGGCAAGACATACCCGTCCGATTTCACTTGCCCAGGCCATTAACGGACGCGTACTGCTGC----ACGTACGGG--
---CGCCGACTAAGATTTGCTTTCGATCCGTGCT----------------------------------------------
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------------------------------------------------------------------------TCGTTGTC
ATTTT-CGTGAGTTGTGGAACCGTTCCACTTTCACATTTGAATCCTTGTAACCAGT-----------TG-CTTTTGGCAA
-------------------------ACAACGATGTACTCTTCTTATT-GAT-----------------------------
--------------------------------------------------------------------------------
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---------------------------------------------ATATATCATCACTGCACAATCATTATTACTCTAGT
TAATTGCCCAAAATAATTATTTTTCTAAA--GCACAGGTA-TGATTGATATAGATGCGCGTGCACACTCACATAA-----
TGTAGTTTCTTCATTTTTGTGAACTGATGATATACACGTTGTTGCA----------------------------------
--GGAGCCATGCTAAAACAAATGTGTAAATAGGTGTTTAAA---------------------------------------
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------------------------
>chr4B_904
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---TACATATCTAAGCTACTACGCCAAACAGTTTGATCCTATGCAT-----GCACGCATCGT--T-CCCC-CGGCTATAA
ATACAGCACTCTCTCCAAGCTCTTATGCATCCCAAACCCAAA------GCAC---TAG---C----TATCCCACTCAAGC
ACACGC-----TCACGGTGACATCCAAAGCTGCCATCTTCGTCGCCCTGAGCATCGTCCTCTCCTCCGTCGCCGCGCACG
GCTGCGGAC---CCTATTGCCAGCCTCCAGTCGTCGTGCCGACGCCGCCCGTTGTCGTTCCGCCGCCGTACCAAGGAAGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCTATCGACGCGCTAAAGCTGCGGGTGTGCGCCAACGTTCTTGGCGGCCT
GCTCGGCCTCAAGGTCGGCGTTTCGGCGCGCGACGAGTGCTGCCCGCTGCTCCAGGGGTTGGTCGACCTTGACGCCGCCG
TCTGCCTCTGCACCGCCGTCAGGGCCAACGTCCTCGGCATCCACCTCGACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CATTGCGGCAAGACGTGCCCGTCCGAGTTCACTTGCCCAGGCCATTAACGGACGCGTACTGATGC----ACGTACGGG--
---CGCCGACTAAGATTTGCTTTCGATCCGTACT----------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TCATTGTT
ATTTT-CGTGAGTTGTGGAACCGTTCCACTTCCACATTTGAATCCTTGTAACCAGT-----------TA-CTTTTGGCAA
-------------------------ACAACCATGTACTCTTCGTATT-GAT-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------ATATATCATCACTGTGCAATCATTATTACTCTAGT
TAATTGCCCAAAATAATTATTTTTCTGAA--GCACGGGTA-TGATATATATAGATGCGCGTGCACACACACATAA-----
TGTAGTTTCTTCATTTTGTGAA----------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>chr1B_904
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---TACATACGTAAGCTACTACGTCAAACAGCTCGATGCCATGCGT-----GCATGCATCCATAT-CACC-AGGCTATAA
ATACAACACTCTCTCCAAGCTCTCATGCATCCCAAACCCAAA------GCAC---TAG---C----TATATTACTCTAGC
ACGCCACACAATCATAATGGCATCCAACACTGCCCTCTTCGTCGCCCTGAGCCTTCTCCTCTCTGCCGTCGCCGCCCACG
GCTGCGGAAGCACCTATTGCCAACCGCCGGCCGTCGTGCCGACACCAACCATCGTCGTTCCGCCGCCATACCATGGAGGA
GGAGGGCACGGCCACGGCGCCGGGCAGTGCTCCATCAACGTGCTCAACCTGAGGGTGTGCGCCAACGTTCTCGGCGGGCT
GCTCCGCCTCAAGGTTGGCGTTCCGGCGCACGACCAGTGCTGCCCGCTGCTCCAGGGGTTGGCCGACCTCGACGCCGCCG
TCTGCCTCTGCACCGCCGTCAGGGCCAACATCCTCGGCCTCCACCTCAACGTGCCTGTGGACATCAGACTCCTCCTCAAC
CACTGCGGCAAGAAGTGCCCGTCTGGTTTCACTTGCCCAGCCCATTAACGG--GCGTACTGTTGC----ATG----GG--
---CGCCGAATAAGATTTGCTTT---------------------------------------------------------
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------------------------
>chr4B_911
--------------------------------------------------------------------------------
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----------CTAAGCGACTACG-CAAACAGTTCGATCCCATGCAT-----GCACGCATCCATAT-CCCC-CGGCTATAA
ATACAGCACTCTCTCCAAGCTCTCATGCATCCCAAACCCAAA------GCACTAGTAG---C----TATCCCACTCAAGC
ACACCC-----TCACGATGACATCCAAAGCTGCCATCTTCGTTGCCCTGTGCATCGTCCTCTCCTCCGTCGCCGTGCACG
GCTGCGGAC---CTTATTGCCAGCCTCTAGTCGTTGTGCCGACGCCGCCCGTTGTCGTTCCGCCGCCGTACCATGGAGGA
GGAGCGCACGGCCACGGC---GGGCAGTGCTCTATAGACGCGCTAAAGCTGCGGGTGTGTGCCAACGTTATCGGCGGCCT
GCTCGGCCTCAAGGTCGGCGTTCCGGCGCGTGACGAGTGCTGCCCGCTGCTCCATGGGTTGGTCGACCTTGATGCTGTTG
TCTGCCTCTGCACCGCTGTCAGGGCTAACGTCCTCGGCATCCACCTCAACGTGCCTGTGGACATCAGCCTCCTCCTCAAC
CACTGCGGCAAGACGTGCCCGTCTGAGTTCACTAGCCCATTCCATTGACGGACGCGTACTGCTGC----ACG----GG--
---CGCCGAATAAGATTTGCTTTCAGATTCTAAAAAATATGGAAATGTTAACGCCCACACGTGTGGGCGTTTGCATCTCG
CCCACACGCGTGGATCCGCATCCGTTCGTGAGCGCACGAATCTTGGCATGTTTCTAGTGCCACGTAGGACTGGCCTGATG
TATCGGCGTTCACCCGGTCGCCCACACGGTCGTTTCACCACACGGGAGGGGCTGGTGTGGGCGTTCAGCAGTTCACCCAC
ACGCCACTTTCCACGCATGCACAAGAGCTATTGTGGGGCATTTGCCATCTCGCCCACACGCCCGTCTCCTCTCCCACACC
CAAGTTGCTAGTTGCCATGTGTTTTGCAGTGCACATGGCAACTGCCCTAGTGTGCTTTATAAGCAGGTGGCAACTCTCTT
TTTACCCGAGTTGCCATGTGTTTTGCAGGGTACACGGCGACTACCTAGTATGCACGTAAGCAGATAGCAACTCTCTTTTA
CCGAGTTGCCATGTGTTTTTGCATGGTACATGGCAACTGCCCTAACGTGCACCTAAGCAGATGACAACTCTTCCTTTTAC
ATGGCAATTGTCCTAGCATGCTTGTGAGCACATGACAACTCTCTCAACTGCCTAGTGTTAGTATGTGGCAACTTTTAAAG
TTTTGAAATCATGGCAACTACAGTAGACTAGACCATACATGGCAACTGCAGTTGAGCAACCATGACAATTGCATGGTACG
AGGCCTGACATACGGGGCGTGTGGGCGTTATCTACTTCGTCCACACGCACGCGTGTGAGAGAGATCGGGAGGGAAAAAAA
AGGTATGTGGGCATTACTTGTTTTGCCCACACGTAGGTGTGTGGACTGTTCCTCTTATACACCACACAAAATATGTGGGC
AGACTCCCTAATGCCCACATGTGTGGCACTTATCGGCGTCCAAAAAATAATAATATTTGCTTTTGAGCCGTACAACTCGA
GAGGAGGCAGCGCCAACAATCACGACAGCGACCGATGCGTTGGATCCGGGAGCCTTGACGTCGTGCAGGATGGGATGACG
TATCCAGGTCGGACGGCGGCGAGTGGCGCCGACACTTCATATTTGACCACGATACGGTGCACTATCACTACTAGGAAAAG
GCCTGCTAGTGGCGCACCTATTTTGGCTACTAATGACGCACTACAAGTATGCCACTAGCACCAGAGAGCGCGCCATTAGT
ATATTACACGGTGCGCCATTACTATCTGACTTAGTAATGGCGCACCACATATTTTCGGATTTTTTTGTCAAATCGTTGTT
ATTTT-GGTG--------------------TCCACATTTGAATCCTTGTAACCAGTACTACTCTTTTCGTTTTTAGCAAA
CAACCTAATAGTCGTTTTCTTTGTGACAAACATATACTCTTCGTATT-AATATATATCATCAGTAATCTTTGTCTGGCTG
TCTCCTCCTCTTTCAAGAAAGAAAGTTAGAGTTTGTGCCTCTCGCCGGCGCCGACGTAGGTCCGTCTCGTCTCTGATGGC
CCTAGGGCCATGGAGGGCTCCGTTTTTAGTCTTTTTTACAATCTTGCTAGGGTTCGTGTCCTGCTCAGGAAGACGAGACG
CCGGCGGGTCCCTGAAGATGAAATAAAGGTCTCCCGCCTAGCCCCCATTCTGGCGGTGCGTCTAGCATCGTTGGTGGGCA
TATGGAGATGTGTCTCCTGCAGATCTATCTTTGATGGATTTGATCGGATCTCATCGTTGTTCGTTTACGTTCGTGTGTCC
TCGGTTTGGATCCTTCCGAACTACGTTATATTTCATTGGCGGCGGTTGCTATTCTGGGATGCTGGTCCTATGGGGTCTTA
GCACGACGACTTCCCAACTATCTACTACAACAAGGTGTGTCCGACTCCGGCGATGGAGGGCGATGTCGGCGGCGCACCTT
CGGCTCGCTTCAGTGCTTGTAGTCGTTGCTAAGTGGTCTACAAATCTGGATATAATTTTTATTTCAGGTGTTCGTTGTAC
TATCATGATTGAAGATGAATAGATTAGAAGTTTTCACGCAAAAAAATATATCATCAATGAGCAATAATTATTGCTCTAGT
TAATTGCCCTTTTG--TTTTCTTTTTGAAACACACAAGTACTGATC----TAGACGCGCGT--GCACATACAGAT-----
TGCAGCTTCTTCATTTTTGAGAACTA----------------------------------TGACGCCTCAC---------
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>SNPs
S---------------S---S-SSS---------------S---S-----------------------------------
-------S-S---------------S--------S----------S-S-S--------------------S--------S
S--------S-----------SSS----S-------------------S-S----S------------------------
---------------S-------SSSS-----SS----SS-S-------S-S-----------SS--------S---S--
-SS---------S-------S---------------------S----SS-SSS-S-----------SS-------S----
----------------S------S---------------SS-----------------------------S-S-------
-----S-------------------------------S----------S----S-S-S-SSS------------------
---------S-S----------------------------------------------------------S---------
--------------------------------S-----------------------------------------------
-S----------SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------S------S------------------------------------------------------
-----S--------------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
-------------------------------------------------------S------------------------
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-------------------------------------------------------S------------------------
--------------------------------------------------S-------------------S--S-SS-SS
SSS--------------------S--------------------------------------------------------
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---------------------------------S---------------------S----------------------S-
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-------------------------------------------------------------------S------------
------------------------------------------------------------S-------------------
--------------------------SSSSSSSS-SSSSSSSSSS-SSSSSSSSSSSSSS-----------SSSSSSSSS
SS----------S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_961
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-------------------------------------------------------------GAGAAGCAGGCAAGTCTCG
T-------------------------------------------------------------------------------
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>reverse_3968
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-----------------------------------------------GTGGCTGGCTGAGGAAATCT-------------
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------------------------
