>input_sequence_78931
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-----------------------------------ATGCTACGGCCAGCGGCTGCCGCCGTTTATCCGTCATCCTACCAC
GCCCCACCGCCGCGATTCCCAGCATTTCCGTCCGGACGACGCTCGGCCGCCATAGCCGTCCGGTGCGTGAACCGCGACGC
GCCCGATACCTCGAAGGCGAAGCTGAAGGTCGGCTCGCCGATCGTCATCACCGAGGAACCGCCCATGCTCAAGACCGCCG
CGTCGGTGCCGTCGCTCCGGCAGAACGCCGGCCGCGTCAAGCCCGGCGACGTCGGGAGGTAC--CTCCTATACTC-----
TACAAGCACTG-GAAAGTAGCATGTGCGTTGTCTCTTATGCCTGACATCCCCGCGGCGTTGCGCAGGATAATGGCGCGGA
AGCCGAAGGACGTCTGGGCCGTGCGGCTCGCCGTCGGCACGTACCTGCTGGACGGGAAGCACTTCAAGCCCCTGGAGGTC
GTCGAGGACGAAGGCGGCGACGATCAACCCCAGGATGAATGA--------------------------------------
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>chr7A_1_TraesCS7A01G427400
CCACCGCAGCGAGGAAGTCGGCGCTGGCTCCTCCCGGCTACGCTTGGCTCCGTGCGGGCTGCACAGTCTGCGCGTCCCCC
ACGCCGTCCCTTGGCCCCGCCGCCTGCTGCTCCCCCACGCGGGCGGCGTTGGGTGCTTGTGCCCGCCCCGCCAGCCCGGA
CACGCACGCCGGAGTCAGAGGCGTGCGTCGCCCGTCGCAAGAGGCAACGGACAAGGGAGAGGGACACGACGGAGAGCTTT
GTCCGCCGCTGCGGGTTACCCACGGAGTCCGACGAGGACGAGCAGCTCCTCGCGTGGGTCTA------------------
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-------------------------------------------GCGCCAGCAGGATCGGGCCGTCCGACACCTCAAGGGC
C------TCGTCTCCTCCTCCTCCTCCTCCGACAACGACGGCTCCTCGTCTGACGACTAGAACGATCCTCCACCAGCCGT
CGACGGCTACAGCTGCGCCGGCAACTGGAAGGGGAAGGGGTCGGCCCGGAAGTGGTGAAGATCCGCTTTTCTTCAATTTA
ATTTCAAGTTTTAGATGTTGAAAGTATTGTGCTTGCCTGTGTTCGTTTGCTGATCTACATAGTTTGATCGATGTTGCATG
GTTTAATATAAATATAGGAGGTCGGATATGAGATACACAGATATGAACGACACTATTTGCGAAGTGTTGGATCAGTGCCC
GCGGACGCATCCGGATGCATCCGCGGGTGTTTGATGAGTCATATTTGTCCTCTGCAGGTGTAGATGCTCTAAGCTCTCAA
TAGAGGGCTC---TGATTGATTTAGGTTGTGGGCAGCAGGTGGAATCAAACTGTCAGCCGACTTGCCCCACCTGCCAGTT
ACACGTGATTTTTCTCCTGATTTCTCGTGTATGCATTGTAGTATCGAACAATTGTTGCTGCTGTGGCGGACCACAACTCC
GCGTGGACCAAT---TAGAGTAGGGCACCTGCTCGGATCAGCTGCCGCCGAGTGCATAGAGGCGTTTCTCCAAGCACAAG
GCATCTT-ATCTTCATCCCG-TTCAGCAGGGCAGGATGCTACGGCCAGCGGCTGCCGCCGTTTATCCGTCATCCTACCAC
GCCCCACCGCCGCGATTCCCAGCATTTCCGTCCGGACGACGCTCGGCCGCCATAGCCGTCCGGTGCGTGAACCGCGACGC
GCCCGATACCTCGAAGGCGAAGCTGAAGGTCGGCTCGCCGATCGTCATCACCGAGGAACCGCCCATGCTCAAGACCGCCG
CGTCGGTGCCGTCGCTCCGGCAGAACGCCGGCCGCGTCAAGCCCGGCGACGTCGGGAGGTAC--CTCCTATACTC-----
TACAAGCACTG-GAAAGTAGCATGTGCGTTGTCTCTTATGCCTGACATCCCCGCGGCGTTGCGCAGGATAATGGCGCGGA
AGCCGAAGGACGTCTGGGCCGTGCGGCTCGCCGTCGGCACGTACCTGCTGGACGGGAAGCACTTCAAGCCCCTGGAGGTC
GTCGAGGACGAAGGCGGCGACGATCAACCCCAGGATGAATGAGCATCAGATCCAGCAACAATCAGCAAAACATTCTTA--
-CATGTTAGTATGGTGCACAAACTGCAATGAAT-------GGATTCAGGAACCAGGATGCCCATTTCGGTTTTC------
---------CCGATAAAATAGTTGGAGCACGCCAAACACAAACGAAT--------------A-------------GGGGC
TTTGCCTGGTTGAACATAGGTACAGCCATAGAAGAGTGTGAATCGGTCACAGAACTATACAGATTGCAGACACAGAAAAA
TAGTATCGTTAGGCCGTG-------------GAGATCTTGGGTGTCTGGTCGTGCTCAAGAGTTACTTCGTCCATGGCTG
TTTAATCCCGATCACGGTGCAAACCGATATCAGCAGAAGGATCAGGAGAATGATGATGGCGTAGCACATCCATTGTCAGG
TCGATCTTGGGTGGG----TGCCTTCTGGAGAGCATCCACACCTTGCTGTATGTGGTCGGCAGCATGTGAAACCTTGGAA
AAACATGGTGCG--------------------AACATTTCGTTAGCTTGCTTTATAAAA-TC----GGTTAGGTCTATTT
AGAA--------CAAGCAGTTTCCAGAAG---T-TGTCTTACATGTGTCTCTATGTGGTTGATCATTTCTCCTTGAGACT
CAACCAATACTAACATACCCAGGAATATCTACAGGGCAAAACCCAGGAAATGGGGTACA--------TTAAGAGTTTAAG
GGGCCCTGCCATTCACATATGCATGGTGTAAACTACTCCCTCCGTCCCATAATATAAGAGCGTTTGAGCGTTTTTGAAAC
GCTCTTATATTATGGGACGCAGGGAATATAACATTGCATAAGAGCTTATGCAAATGAAAGG----TAGCCTGTTGCAACT
CCAGAAGCTTCCTCTCAAGATCTCTTACAGCATCATGCCGCTCCTATATCTCAGCAGCAGTATCCAATATCTGGAAGATG
G----AAGATTATCCTGGTGAGATTTTGATGCATTTCCCAACAAGTGCCCAAATAATGACCAAGTTATAACGCACAT--A
CCTGGCCTCTCCCCTGCTGTTGAACCGCATCTTTGAAAATTTGCTC
>chr1A_80
CACA----------------------------------------------------------------------------
---CCATCCCCTGGCCCCGCCGCCTGCTGCTCCCCCACGCGGGAAATAGTGGGTGGTTATGCCCACCCTGCTGGCCCGGA
CATGCACGCTGGAGTCAGAGGCGCGCGCCGCTCGCCGCGAGAGGCAACGGGCAAGTGAGAGGGACGCGATGGAGAGCTTC
GTCTACAGCCGCCGGTACCCG-CGGAACCCGACGAGGACCAGCGGCTCCTCACGTGGGTCTACCACCGGTCGCTTACGAC
GGTGGAGTCAAACGCTCGACGGCTTCGTCGAAAGAATGCGAAGGCTCTCCGGCTAGCTATTGAGCACTCCGAGCGCGAGG
CCAGGGAGAAGGCGGCGGGTGCGGCTCGGCGGGCGAAGCTCAAGCGCCCGCAGGACCGGGCCGTCCGGCGCCTCAAGGTC
CTCATCATCGTCTCCTCCTCCTCCTCC---------GACGGCTCCTCGTCCGACGACTCGGACGATCTTCCACCAGCCGC
CAATGGCTACTGTTGTGCCGGCAACCGAAAGGGGAAGGGGTTGGCCTGGAAGTGGTGAAGATCCGCCTTTCTTCAATTTA
ATTTCAAGTTTTAGATGT--------------------------------------------------------------
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>chr7D_718
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----------------------------------------------------------------TGCCCTAAGCTCTCAT
AAAATGGAGGGCTTGATTGATTTAGGTCGTGGGCAGCAGGTGGAATCAAACTGTCAGCCGACTTGGTCCACCAGCCAGTT
ACATGTGATTTTTCTCCTGATTTCTCCTGCATGCATTGTATCGAAATAAT-TTGTTGCTGCTGCGGTGGACCCCACCTTA
GCGTGGACCAACTAGTAGAGCTGGGCATCTGCCCGGACCAGCTGCCGCCGAGTGCATTTAGGCATTTCTCCAAGCACAAG
GCATCTT-ATCTTTATCCCGTTTCAGCAGGGCAGGATGCTACGGCCAGCGGCTGCCGCTGTTTATCCGTCATCCTACTAC
GCCCCACCGCCGCGATTCCCAGCATTTCCGGGCCGACGACGCCCCGCCGCCATAGCCGTCCGGTGCGTGAACCGCGACGC
CCCCGACGCCTCGAAGGCGAAGCTGAAGGTCGGCTCGCCGATTGTCATCACCGAGGAGCCGCCCATGCTCAAGACCGCCG
CGTCGGTGCCGTCGCTCCGGCAGAACGCCGGCCGTGTCAAGCGCGGCGACGTCGGGAGGTAGCGCTCCTACACTCTTATA
TACAAGCACTT-GAAT---GCATATGTGATGCCTCTGACGCCTGACATCCCCGCGGCGTTGCGCAGGATAATGGCGCGGA
AGCCGAAGGACGTCTGGGCCGTGCGGCTCGCCGTCGGCACGTACCTGCTAGACGGGAAGCACTTCAAGCCCCTGGAGGTC
GTCGAGGACGAAGGCGGCGACGATCAACCCCAGGATGAATGAGCATCAGATCCAGCAACAAACAGCAAAACATTCTTAGT
ACATGTTAGTATGCTGCACAAACTGCAATGAGTGAATTCAGGATTCAGGAACAAGGATGCAGATTTTGGTTTCGCGTTCG
CCACTTTCACCGATAAAATAGCTGGAGCACGCGAAGCACAAACGAATTAGCAGCAGCCTCCA-------------GGGGC
TTTGTCTGGTTGAACATAGGTGCAGCCACAGAAGAGTGTGAATCGGTCATAGAACT-CACAGATTGCACACACAGAAAAA
CAGTATC-TATATCCATATATATTCTG--CCGAGATCTTGGGTTTCAGGTTGTGCTCAAGGGTTACTTCTTCCATGGCTG
TTTAATCCCGACCACGATGCTAACCACT----------------------------------------------TTCTCG
AGTTTTTCTGCAGCTTCTTTG-CTTCTGGAGAGCACCCACACCTTGCTGTATGTGATCAGTAGCATTTGAAACCTTGGAA
AAACAAAGTGGCATGACAGTGCAAATGTTAGCAACATTTCGTTAGCTTGCTTCATAAAAATC----GGTTAGG-CTATTT
GAAA--------CAAGCTGTTTTCAGAAG---T-GGTCTTACATGTGTCTCTATA-----GATCATGTTTCCTTGAGACT
CAACCAATACTGCCATATCCAGGAATATCTACAAGGCAAAGCCCAGGAAATGGGGTACA--------TATTACCC-----
---CCCTGCCATTCACATATGCATGGTGTGAACTA---------------------------------------------
----------------------------TAAAATTGTATAAGAGCTTATGCAAATGAAAGG----TAACCTGCTGCAACT
CCAGAAGCCTGCTCTCTAGATCTCTTACAGCATCATGCCGCGCCTGTATCTCAGCAGCAGCATCCAATATCTGGAAGATG
G----AAGATTATACTGATGAGATTTTGATGCATTTCCCCACAAGTGTCCAAATAATGACCAAGTTATAACTCATAT--A
CCTGGCCTCTCCCCTGCTGTTGAACCGCATCTTTCAAAATTTGCTC
>chr7B_925
TCACCTGCCC----------------------------------------------------------------------
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-----------------------------------------------CCGAGTGCATAGAGGCATTTCTCCGACCACAAG
GCATCTTTATCTTTATCCCGTTTCAGCAGGGCAGGATGCTACGGCCAGCGGCAGCCGCCGTTTACCCGTCATCCTACTAC
GCCCCACCGCCGCGATTCCCAGCGCTTCTGGCCGGACGACGCTCCGCCGCCATAGCCGTCCGGTGCGTGAACCGCGACAC
GCCCGATACCTCGAAGGCGAAGCTGAAGGTCGGCTCGCCGATCGTCATCACCGAGGAGCCGCCCATGCTCAAGACCGCCG
CGTCGGTGCCGTCGCTCCGGCAGAACGCCGGCCGCGTCAAGCCCGGCGACGTCGGGAGGTAGCGCTCCTATACCC---TA
TACAAGCACTTTGAAT---GTATATGCGATGTCTCTTATGCCTGACATCCCCGCGGCGTTGCGCAGGATAATGTCGCGGA
AGCCGAAGGACGTCTGGGCCGTGCGGCTCGCTGTCGGCACGTACCTGCTGGACGGAAAGCACTTCAAGCCCCTGGAGGTC
GTCGAGGACGAAGGCGGTGAAGATCAACCCCAAGATGAATGAGCATCAGATCCAGCAACAAACAGCAAAAAATTCTTAGT
ACATGTTAGTATGCTGCACAAACTGCAATGAGTGAATTCAGGATTCAGGAACAAGGATGCAGATTTTGGTTTCGCATTCG
CCACTTTCACCGATAAAATAGCTGGAGCACGCGAAGCACAAACGAATTAGCAGCAGCCTCCA-------------GGGGC
TTTGTCTGGTTGAACATGGGTGCAGCCACGGAAGAGTGTGAATCGGTCATAGAACTACACAGATTGCACACACGGAAAAA
CAGTTATTTATATTTATATATATTCTG--CTGGGATCTTGGGTTTCCGGTCGTGCTCAAGGGTTGCTTCTTCCATGGCTG
TTTAATCCCGACAACGATGCTAACCACT----------------------------------------------TTCTCG
AGTTCTTCTGCAGCTTCTTTGCCTTCTGGAGAGCACCCAGACCTTGCCGTATGTGGTGGGTAGCATTTGAAACCTTGGAA
AAACATGATGGCATGACAGTGCAAATGTTAACAACATTTCGTTAGCTTGCTTCATAAAAATC----GGTTAGGTCCATTT
AGAA--------CAAGCTGTTCCCAGAAG---TCTGTCTTACATGTGTCGC--TGTGGTTGATCATGTCTCCTTTAGCCT
CAACCAATACTGCCATATCCAGGAATATCTACAAGGCAAAACCGAGGAAATGGGGTACAGTACGAGATATTACAC-----
---CCCTGCCATTCACATATGCATGGTGTGAACTA---------------------------------------------
----------------------------TAAAATTGTATAAGAGCTTATGCAAATGAAAGG----TAACCTGCTGCAACT
CCAGAAGCTTGCTCTCTAGATCTCCTACAGCATCATGCCGCTCCTGTATCTCAGCGGCAGTATCCAATATCTGGAAGATG
G----AAGATTATCCTGATGAGATTTTTATGCA----------AGTGTCCAAATAATGACCAAGTTATAACTCATAT--A
CCTGGCCTCTCCCATGCTGTTGAACCGCATCTCTGAAAATTTGCTC
>chr2D_1471
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---------------------------------GATGAATGAGCATTAGATCCGGTAACAAACAGCAAAACGTTCT---T
ACATGTTAGTATGGTGCACAAACTGCAATAAAT-------GGATTTAGGAACAAGAATGCACATTTCGGTTTCGCGTTCA
CCACTTTCACCGCTAAAATAGCTGGAGTACACGAAACACAAATGAA-TAGCAGCACCTCCAGGGGCAAACAATATGGGGC
TTTGTCTGGTTGAGCATAGGTACAACGATAGAAGAGTTTGAATCGGTCACAGAACTACACAGATTGCACAAACACAAAAA
CAGTATA-TATAT----ATATATTCCG--CCGAGATCTTGGGTTCCAGGTCATGCTCAAGAGTTACTTCTTCCATGGCTG
GATAACCGCGACCACGATGATAACCACTATTAC---------CAGGAGAAGGATGATGGCGTAGCACATCCACTTTCTCG
AGTTTTTCTGCAGCTTCTTTGCATTCTGGAGAGCGCCCACACCTTGCTGTATGTGGTTGGTAGCATTTGAAACCTTGA-A
AAAGAAAATGGCATGACAGTGCAAATGTTAGCAACATTTCGTTAGTTTGCTTTATAAAA-TC----GGTTAGGTCTATTT
AGAA--------TAAGCTGT------------T-TGTCTTACATGTGTCTCTATGTGGTTGATCATGTCTCCTTGAGCCT
CAACCAATACTGCCATATCCAGGAATATCTACAAGGCAAAACCCAGGAAATTGGGTACA--------TAAGA--------
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>chr2A_1471
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---------------------------------GATGAATGAGCATTAGATCCGGTAACAAACAGCAAAACGTTCT---T
ACATGTTAGTATGGTGCACAAACTGCAATAAAT-------GGATTTAGGAACAAGAATGCACATTTCGGTTTCGCGTTCA
CCACTTTCACCGCTAAAATAGCTGGAGCACACGAAACACAAATGAA-TAGCAGCACCTCCACGGGCAAACAATATGGGGC
TTTGTCTGGTTGAGCATAGATACAACGATAGAAGAGTTTGAATCGGTCACAGAACTACACAGATTGCACAAACACAAAAA
CAGTATA-TATAT----ATATATATTCCACCGAGATCTTGGGTTCCAGGTCATGCTCAAGAGTTACTTCTTCCATGGCTG
GATAACCGCGACCACGATGATAACCACTATTAC---------CAGGAGAAGGATGATGGCGTAGCACATCCACTTTCTCG
AGTTTTTCTGCAGCTTCTTTGCATTCTGGAGAGCGCCCACACCTTGCTGTATGTGGTTGGTAGCATTTGAAACCTTGAAA
AAAGAAAATGGAATGACAGTGCAAATGTTAGCAACATATCGTTAGTTTGCTTTATAAAA-TC----GGTTAGGTCTATTT
AGAA--------TAAGCTGT------------T-TGTCTTACATGTGTCTCTATGTGGTTGATCATGTCTCCTTGAGCCT
CAACCAATACTGCCATATCCAGGAATATCTACAAGGCAAAACCCAGGAAATGGGGTACA--------TAAGA--------
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>chr7B_1815
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------------------------------------------CAGGAGGAGGATGATGGCGTAGCACATCCACTTTCTCG
AGTTCTTCTGCAGCGTCTTTGCCTTCTGGAGAGCGCCCACGCCTTGCTGTATGTGGTTGGTCGCGTTTGAAACCTTGCAA
AAACAAAA-----------------------------TCCGTTAGCTTGCTTTATTTATGAAGTCGGTTTAGGTCTATTT
AGAAAGAAAACATAAGCTGATTTCACAAGTCTT-GGTCTTACATGTGTCTCTATGTGGTTGATCATGTCTCCTTGAGCCT
CAACCAAGACCGCCATATCCAGGAATATCTACAAACCAAAACCCAGGAAATGCCTTCTGTTCACATATGG----------
----------------ATATGCATGGTGGGTGTCAAATATAAACAAAATTGCACTC------------------------
--------------------------------------TAAGAGCTTATGCAAAAGAAAATTGTATAACCTGCTGCAACT
CCAGAAGCTTCCTCTCTAGATCTCTTACAGCATCATGCCGCTCCTGTATCTCAGCAACAGTGTCCAATACCTGCAAGATG
GTTGGAAAATTACTCTGATGAGATTTCGATGCATTTTCCCACAAGCATCCAAATAATGACCAAGGTATAACTCATATGTA
CCTGGCCTCTCCCCTGCTGCTGAACCGCATCTTTGAAAATCTGCTC
>SNPs
-----SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--S----S--------------------------------SSSSSS------S--S-----S---S--SS-------
--S------S-------------S---S---S--S---S-----------S----S---------S---S---------S
---SS-S--S--S---SS--SS----SS-----------S---S-------S----------------------------
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------------------------------------------------S------S-----------S-S--------S-
---------------------------SSSSSSSSS--------------S-------S-S------S-----------S
-S-S------S-S--S---------S-S-------------S----S-------------------S-------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------S
S-S-S--SSS-----------------S-------------------------------------SS-----S-------
---S----------------------S--S----------SSSSSSS-SSS------------S--S-----S--S--SS
-----------S--------SS-----S----S----S-------------------------S----------------
-------------S---------------------------------------------------------------S--
------------------------------S-------------S-----------------------------------
---------------------------------------------------------S----------------------
-------------------------------------------------------------S------------------
----------S----SSSS----S----S---------------------------------------------------
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-------------------------------------------------------------S------------------
----------------------------------------------------S-------S-----------SS------
---------------------S----------S-----------------------------------------------
----S----------------------------------------------------S----------S-----------
S------S-SSSS--S-S-------------------------S--S----------------------S----------
-----------S----S---S----SS---S-SSSSSSSSSS--------S---------------------S-S--SS-
SSSS-S-SS-SS-S---------------------S------------------------S-----S-------------
----------SS--------------------------------------------------------------------
-----------------S------------------------------------------------S-------------
-----------SS----S---------------S----------------------------------S-SSSSSSSSSS
SSS--------------------------S-----SSSSSSSSSSSSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S------------------------------S----S-------
----------------S----------------------------S----------------------------------
-----------------S---------------------S-------S-----------------------S--S-----
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>forward_946
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----------------------------------------------CAAACTGTCAGCCGACTTGC--------------
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>reverse_2075
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--------------------------------------------------------------------------GTCAGG
TCGATCTTGGGTGG------------------------------------------------------------------
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