>input_sequence_78922
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---------------------------------TCGCAGCATCCAGAGACAAAGGCGAGACGTGCTCTCAGTTGCGACCA
GAGTAGAGACGTCGCGCGCGCCGGGGCTGTCGCCGTGGAGGTGTGGA------GCTGAGCAGAGCTAGCTAGTCATCGAT
GGGGTTTAACCTGCTGGTGGCGTTCGCGGCGGCGAGGGGCTTCGTGCAGGTGTTCCACCTGTCGGCGCCGTCGCAGTCGC
CGCTCAACCTCTGGCTGCCGCTCGCCCGCCACCTGCCCGAGGCCTGCGCTGCCCTCTGCGGCGTGCTCGCCGCCCAAGTC
GCGTGGCTGCGCCGCGCCTATGCGCGCGGTGGCACCGTCTGGAGCCGCCGCAGCCGCGACGACGTCGACGTCCTCCGCCA
GGCGCTGCTCGACGTCTCCTACTGATCATTCGACATGCAGCAGAGCGCCGCGCGGCAGTGTCGCTCTCGCTCGCCGCTTC
CAGTGCTGTGGCTTACGAGTTAGGACGTTGTGTTTCTC------------------------------------------
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>chr2B_1_TraesCS2B01G541100
TAGACGGTGGCTTTAATCTTACTGTTGTATGACTTTGTAAGGTCTTGTGTGAATAATTAATAAAGTGGCTGCATGCATCA
TCCAGATGCAGCGGCCGGGGTTCCTCCTCCTTTTCTAAAAAAATACCGGTTATAGCATAGAGTATCAACGTCTAATTATA
AACACAAAAATAAATAATACAAATATTATTGCCTCTAGAGCATATTTCCAACAGTGTCTATCTTTATCGCCTGTATGGAT
TATGGGTGTGGAAAGTAAAGGAGGGACCGCAACTGAGAACGAGGGGCATACTAGGGGTATTTATG-AAAAAAACTATTAT
TTGGCTATAACCCCCGCTGGATTGCATGTCGATGTGATGATGGTCAACGTGCCACGTGAGTAGGTCACACATGATCTGAA
CTGTTTACCACATTCGATGAACACCTTACAAACTTTTAGAATTCACATACGCATTTTCTTTTGAAGTTTTAAGACTAGCT
TGAATTCCATCATATACTAGG---------------------------------------TAATTAGGTCAGCTTTTTTA
AGGGCAATACATTTTTTTTCTTGAGAAGATATTGAGTGAGGCCTGTCTTTTCTTTTCCTTTTTAAATCAGGCAAATCTAC
TAATGGCAGCGTGGGCACACGGTGCTTTTTTGGGGCGAACATGTCCAAAGTTTCCCGAGCGGGGGACTAACACCATGAGG
TCCATGGTACATGGTCCAACGTCGTAGGGTCGACTGGCCCATACACACCTTCATGGACTTGTCCTTCCGTTTGTTTTGTG
CGGTCCACTGGCATGTCGGCGGTCGACT---------------------------------GCAGGAGCCATCACCTTCT
TTTGCCCGATTCCGCCTGTCTAGACTCATCATCACGTCCTCTTTAACTCACAAGTCACAACAACGACGATAATAACAGCT
CATTCATTTCGTTCGCGCTCGCCCGCCCCGCCGCCGGCAAAAGCAAAGTCACACCACCGACACCGAGGCAGCCTAGCCAC
ACTTCACGCACGCCAACGTCCACGGTCACACGCTCGCAGCATCCAGAGACAAAGGCGAGACGTGCTCTCAGTTGCGACCA
GAGTAGAGACGTCGCGCGCGCCGGGGCTGTCGCCGTGGAGGTGTGGA------GCTGAGCAGAGCTAGCTAGTCATCGAT
GGGGTTTAACCTGCTGGTGGCGTTCGCGGCGGCGAGGGGCTTCGTGCAGGTGTTCCACCTGTCGGCGCCGTCGCAGTCGC
CGCTCAACCTCTGGCTGCCGCTCGCCCGCCACCTGCCCGAGGCCTGCGCTGCCCTCTGCGGCGTGCTCGCCGCCCAAGTC
GCGTGGCTGCGCCGCGCCTATGCGCGCGGTGGCACCGTCTGGAGCCGCCGCAGCCGCGACGACGTCGACGTCCTCCGCCA
GGCGCTGCTCGACGTCTCCTACTGATCATTCGACATGCAGCAGAGCGCCGCGCGGCAGTGTCGCTCTCGCTCGCCGCTTC
CAGTGCTGTGGCTTACGAGTTAGGACGTTGTGTTTCTCGTTTGTTCTATTGGTTCCTTGCTCATTTATCTTTCCCGGGAG
TTGCGTGATCTGTAGTTGTAAAACTGAATCTGTAAACACCGCTCACAAACTCCCTCCCCAGTCCCGCGTTATCCCCAGAC
CTTTCTTCTCCTCTCCAGTGCTACTGTAGGAGGCGATAAGGGAGGCGAAAGGAGGGCGACCGGCGTCGCTCCGGTCGTTG
AGGCCGTCGGGCCGCTCCTTCTCCGGTGCCCCTCGGGGCCTTGGAGATGCAGCGGACCATGGTTCTCCCCCGGCCGGTGG
CTGTACTGTCCCTGCGCTATGTAGGCTAGTTCTCCGGCCAAGTTCGCTATCACGGCACCGGCGGGCTTGGGTAGGAAGAA
GGTCCCGCCGACTGCGGTGCCGTTGCAGCGGCGAGTTCTCAGGCGTCGTTGTGGAGTCTGTGAGGGGGAGGTGTACAGGA
GTTGCGCTTTTGAAGCGCCGCTCGTCTGCGGCTGCCATGCGTGGCGTGGCAAAGCTGTGGGCGGGCGCGAAGGCGAGCAG
CTGCGGCAGTCATCGGTACGGGGCAGTGGCGCGTGGATCTGGCCGTCTCGGTGTGGACAGAGTGGTCAAATCCCCAGATC
TGAGCCGATGCAAGCTCGTAGAGCTCCTCATGGAGGGAGGTTGCCTCCGGCCGCCGGATCCTTACCGGATTTCATCCTAG
TCTTTAGGCTGGGATGCTATTGCGGCTCAATAAAGCCAGAGGGCGAGGGGCTTCATCGGCTCTGGTTTTCATGCTCTGCG
TCGGTGGTTTTTCTCCAGCAGTTTCGACGGCGGAAGACACTGGCGCTGAGCATCTTCGGCTTGTACGAAGAAGACGATGG
ACCAACTTGTTATTTTGTTCCTTTTTGAGTTAAAATACCCTGGAGGTTCCTCAACTTGTCTTGAGCGATCAGTTTAGTGA
CTAAAGTTGTAAAATACATAAAACTGGTGCTCGAACTTGTCAGGCCGTGTAAATACGATACATCCATTCATATCAGGA
>chr2D_123
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------------------------------------------ATACCGGTTATAGCATAGACTATAAACGTCTAATTATA
AACATGGAAATAAATAATAAAAATATTATTACCTCTAGAGCATATTTCCAACAGTGCCTACCTTTGTCGCCTATATGGAT
TATGGGTGTGGAAAGTAAAGGAGGGACCGCAACTGAGAACGAGAGGCATACCAGGGGTATTTATGAAAAAAAACTATTAT
TTGGCTATAACCCCCGGTGGGTTGCATGTCGATGTGATGATGGTCAACGTGCCACGTGAGTAGGTCACACATGATCTGAA
CTGTTTACCACATTCGATGAACACCTTACAAACTTTTAGGATTCACATACGCATTTTCTTTTGAAGTTTTAAGACTAGTT
TGAATTCCATCTGATAATTATGGTGCCTCGGATGCAACTCACCCCTCGAATTCCATCTGATAATTAGGTCTGCTTTTTTA
AGGGCAATACAGTTTTTT-CTTGAGAAGATATTGAGTGAGGTCTGCTTTTTCTTTTCCTTTTTAGATCAGGCAAATCTAC
TAATGGCAGCGTGGGCACACGGTGC---TTTGGGGCGAACATGTCCAAAGTTTCCCGAGCGGGGGAC-AACACCATGAGG
TCCATGGTACATGGTCCAATGTCGTAGGGTCGACTGGCCCAAACACACGTTCATGGACTTGTCCTTCCGTTTGTTTCGAG
CGGTCCACTGGCATGTCGGCGGTCGGCTGGTGGAGCCATCACCTTTTTTTTTTTTGAAAACGCAGGAGCCATCACCTTCT
TTTGCCCGATTCCGCCTGTCTAGACTCGTCATCACGTCTTCTTTA-CTCACAAGTCACAACAACGACGATAATAACAGCT
CATTCA-TTCGTTCGCGCTCGGCCGCCCCGCCACCGGCGAAAGCAAAGTCACAC------CACCGAGGCAGCCGAACCAC
ACATCACGCACGCCAACGTCCACGGTGACACACTCGCAGCATCAAGAGACAGGGGCGAGACGTGCTCTCACTTGCGACGA
GAGGCGAGACGTCGCGCGCGCCAGGGCGGTCACAGTGGAGGTGTGGAGCTGAGGCTGAGCAGAGCTAGCTAGTCAACGAT
GGGCTTTAACCTGCTGGTGGCGTTCGTGGCGGCGAGGGGCTTCGTGCAGGTGTTCCACCTGTCGGCGCCGCCGCAGTCGC
CACTCAACCTCTGGCTGCCGCTCGCCCGCCAGCTGCCCGAGGCCTGTACTATCCTCTACGGTGCGCTCGCCGCCCACCAC
GCATGGCTGCGCCGCGCCTATACGCGCGGCGGCACTGTCTGGAGCCGCCGCAGCCGCGACGACGTCGACGTCCTCCGTCA
GGCGCTGCTCGACGTCTCCTACTGATCTTTCGACATGCAGCAGAGCGCCGCAGGGTAGTGT-------------------
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>chr7A_1598
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----------------------------------------------------------------------------AGAC
CTTTCTTCTCCTCTCCAGTGCTACTGTAGGAGGCGATAAGGGAGGCGAAAGGAGGGCGACCGGCGTCGCTCCGGTCGGTG
AGGCCGTCGGGCCGCTCCGTCTTCGGTGCCCCTCGGGGCCTTGGAGATGCAGCGGACCACGGTTCTCCCCCGGCCGGTGG
CTGTACTGTCTCTGCGCTATGTAGGCTAGTTCTCCGGCCAAGTTCGCTATCACGGCACCGGCGGGCTTGGGTAGGAATAA
GGTCCCTCCGACTGCGGTGCCGTTGCAGCGGCGAGTTCTCCGGCGTCGTTGTGGAGTCTGCGAGGGGGAGGTGTACAGGA
GTTGCGCTTTTGAAGCGCCGCTCGTCTGCGGCTGCCATGT-----GTGGCGAAGCTGTGGGCGGGCGCGAAGGCGAGCAG
CTGCGGCAGTCATCGGTACGGGGCAGTGGCGCGTGGATCTGGCCGTCTCGGTGTGGACGGAGTGGTCAAATCCCCAGATC
CGAGCCGATGCAAGCTCGGAGAGCGCCTCATGGAGGGAGGTTGCCTCCGGCCGCCGGATCCTTACCGGATTTCATCCTGG
TCTTTAGGCTGGGAGGCTATTGCGGCTCAATAAAGCCAGAGGGCGAGGGGCTTCACCGGCTCTGGTTTTCATGCTCTGCG
TCGGTGGTTTTTCTCCAGCAGTTTCTACGGCGGAAGACAATGGCGCTGAGCATCTTCGGCTTGTACGGAGAAGACGATGG
ACCAACTTGTTATTTTGTTCCTTTTATGA---------------------------------------------------
------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S---S--------------
----SSS------------S----------S-------------------------S---S----S------S-------
-------------------------------------------S-------S----------------------------
----------------S---S-----------------------------------------------------------
---------------------------------------S--------------------------------------S-
-----------SS---S-SSS-------------------------------------------------S---------
-----------S------S----------------------S---SS-----------------S---------------
-------------------------SSS---------------------------------------S------------
-------------------S---------------------S------S---------------------------S-S-
-------------------------S------------------------------------------------------
---------------------------S----------S------S----------------------------------
------S--------------S----------S-----S---------------SSSSSS-------------S-S----
--S-----------------------S----S-----------S-------SS-----------------S-------S-
---SS-----------------S----S---S-S-----------------------------------------S----
---S----------------------S-------------------------------------------S---------
-S-----------------------------S--------------SS--SS-----S---S-S------------SSS-
--S------------------S-------S-----S-----------------------------------------S--
---------------------------S-----------------------SS--S-----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-----------------------------------------------------------------------------S--
------------------S---S------------------------------------S--------------------
----------S------------------------------------------------------------------S--
------S---------------------------------S-------------------S-------------------
---------------------------------------SSSSSS-----S-----------------------------
----------------------------------------------------------S---------------------
S-----------------S-----S-----------------------------------------------------S-
--------------S----------------------------------------S------------------------
-------------------------S-------------S---------------------------S------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_115
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---------------CGGGGTTCCTCCTCCTTTTC---------------------------------------------
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>reverse_1644
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-------------------------------------------CACAAACTCCCTCCCCAGTC-----------------
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