>input_sequence_78919
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--------CACCCCGCCGCTCCAACCAATTTCTTCTACGCCGAGAGTT-----------------------------GAG
AGAGAGACAGACAGGGAGGGAGCCGCTGGCATGAACTGCGTCAAGATTCTCGTACTGCTCTCCCTGATCCCTCTCGCTCT
GAGGGGAGCGTCGCTTCTCGTCGTCCCGTCACCCTCCGCC---GACCCCGCGTCGCGCGCCGGCGTCTTGGCTCCGGTAC
AGGCGGAGCAGTGGAGGCAGCAGCGGAGGAGGACGGCGGG---TCAGGCTCAGGGCGGCCGCG---CCACCATCGCGCCC
TTCGCCCCGCGGCGGTTCGGCGGCGCCGCCGGCGGCTTCTTCCGGGACGACAAGAGGTTCGCGCCCACGGGGTCGAACCC
GCTGCACAACCTGTGATCGGCGGCCGGTGGGGTTGACTGCTTCGACCTCCCTGTCTGTGCAAAGTCTACCCAACTGGTGC
ACTGTAATTTTCCTCTTGTACATACGGTCTA-----TCAG----TTATTGATTC--------------------------
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>chr1B_1_TraesCS1B01G134700
ATTCCTTTTCTCCGAAATACAGAAATAGGCAAAAAACCAACAATACGGGCTGGGCCTCCGGTTAATAGGTTAGTCCCAAA
AATGAGATAAATGTGTAAAATAAAGCCCATAAACATTCAAAAGGGGTAATATAATAGCATGGAACAATCAAAAATTACAG
ATACGTTGGAGACGTATCAGTCCTCGTCGGCGGCCGCCGCGGAGGGAGTTCGGGGGAGTCCGCAAAACGCGTTGGGGCGC
ACCGGTGGGCGGATCCTCCGAGCGGCGGCGGCTCGAGGAAGCGGCCGCGCGTGATGACCCGCGGGCGTGGTTGCGCGGAT
CCGCGCTGCGGGTCGGCGGAGGGGACCGGCGACCACCACGTCCAGCCATCGGGAGGAAGGAGGGCGGCGGATCGGGGCGG
AGGTCGTGCCGGCGGTGGGGCGAAGGGAAGAAGAGGATGCCGGGGAGAGGAAGAGAGAGTGGGGATTTTTTTTACTCGGC
CGCCGCTAGCCGGAGTAAATATAAGGAGAAGATTGAAGATGGAGTAAAAATTACTCCACTATCGGTTATAAGGAATCGGA
TAGGTGCATTTAGAGGAGAAAAATATCCAAATATATTTTCGTACCGCGGGATAAGGGATCGATTAGAAATGCCCTGATGG
TGTTATGGGTTAAGCTAGAATGCCACTATTTTGCACGCATCAACTATCAA------------------------------
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-----------------------------------TCAAGTTGTTT---------------TGGGAGGCGAGAGTC----
----------AGTGAAGGATGCCACTGTCATTTCATGATTCCTCACCCGTCCAATCGAAAACCGGTACGAACAATACGCG
ACGCTGGGCTCACTTGCTCTA----AAAGCTGCTCCCTCTTTGGCTCATTGCTCTT-----CCTCCCTCCTACGTCAAAT
CACTCTCTGTTTC-------------------------CTCTCTCTCCGCATGACTGCATCCATTCCGTCCATCATTGCC
GATTACGCATTTACGCAAGTTGCCAACCAACGCCAAAGCTCACCACTGTCGTCTCCTCTCACTCACCGGCCGCTCCCATA
TATCCGCTCACCCCGCCGCTCCAACCAATTTCTTCTACGCCGAGAGTT-----------------------------GAG
AGAGAGACAGACAGGGAGGGAGCCGCTGGCATGAACTGCGTCAAGATTCTCGTACTGCTCTCCCTGATCCCTCTCGCTCT
GAGGGGAGCGTCGCTTCTCGTCGTCCCGTCACCCTCCGCC---GACCCCGCGTCGCGCGCCGGCGTCTTGGCTCCGGTAC
AGGCGGAGCAGTGGAGGCAGCAGCGGAGGAGGACGGCGGG---TCAGGCTCAGGGCGGCCGCG---CCACCATCGCGCCC
TTCGCCCCGCGGCGGTTCGGCGGCGCCGCCGGCGGCTTCTTCCGGGACGACAAGAGGTTCGCGCCCACGGGGTCGAACCC
GCTGCACAACCTGTGATCGGCGGCCGGTGGGGTTGACTGCTTCGACCTCCCTGTCTGTGCAAAGTCTACCCAACTGGTGC
ACTGTAATTTTCCTCTTGTACATACGGTCTA-----TCAG----TTATTGATTCTGCATTGATAC--AAATGGGTTATCC
CTGT---------GTGTTCAATTTGGTCATACGTATATCCGCCGTTGGTAACTTAGCCTGAAAAAAGGTTGTCAAGAACC
TACTGCTGTTGTTTTTTTTAAGTTCGATTGGCTTCAGAAATCAGAACAGAGATTGACAAAATTGGTAACTGAACTGTTCA
TGTTGGTGCCAAGACTTGCAGCTTCTC---------AAGACAGTCCTGAAGACTTTCCT--GGGAAGTTTATAGCAGCTC
ACACAACCTAGTCACTCGTTCAAGGGGATTTCCGCTTCCCCATGGTAACTGAACTGTTCGTGTTGG-----------TGC
AAAGATTTGCAGCTTCCG---ATGGTAAACGAAGGAAAAGTT-GCACCGTTGGCCCGATTAGGCCGCAGC--AAAGTCAC
TTTGATATATAGTACCCTCTCCGTCTCGTAATGTAAGATATTTTTAGACATTAGAGCATCTCCAACACGCGCACAAAAGT
TTCGCGTGCTAAAATAGTTTTAGCGCGACACTGTACCATTTTTAGCGCGTTGGACCCAACGTTGGTTTACCAGATGCCTA
AAAAAGCGCGTCCAAGAAAAACGCAGTGCAAATTATGAAGCGCGCGCAATCCATTGCCCCAAATTTGCAGCTTCTGGTAG
AGCTTTTTACACGCACTATTTTACAGCTTCTGCTGGAGCTGTTCGGCGCCAAAAAAAATCAACTTTTAGCGCGTGAAACA
GTTTTTGTGCGCCTGTTGTAGATGCTTAGTGTAGTGTCAAAAAACGTCTTATATTATGGGACAGAGAGAGTATTATATAG
AAGAAATTTTAACCGGTTTTATATTGGGAGTGTGATGCGGAGCATCCCTCGCTCATCCCCATGGACGTGTCTACATCTTC
CTCAACACCACTTGGACCCATGACAAGAGCTAGAGCCAAGGCTATCGAAGATAAGGTGAACTCGCTCCTTTCCGAACTTC
CTCTCTCTACTCACGAGACTTGGCTACTACCTCATATGGACACTTTGTGTGTG
>chr1A_629
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--------------------------------------------------------------------ATGCCCTGACAG
TGTCATGGGTTAAGCCAGGATGCCACTATTTTGCACGCATCAACTT----------------------------------
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--------------------------------------AGTTGTTT---------------CGGGAGGAGAGAGCGAGAG
CCAGTGAGCCAGTGAGGGATGCCACTGTCATTTCATGATTCCTCACCCGTCCAATCGAAAACCGGTACGAATAATACGCG
ACGCTGGGCTCACTTGCTCCTCTAGAAAGCTGCTCCCCCTTTGGCTCATTGCTCCCCCCTCCCTCCCTCCTACGTCAAAT
CACTCTCTGTTTCT-------------------------TCTCTCTCCGCATGACTGCATCCATTCCGTCCATCATTGCC
GATTACGCATTTACGCAAGTTGCCAACCAACGCCAATGCTCGCCACTGTCGTCTCCTCTCACTCACCGGCCGCTCCCATA
TATCCGCTCACTCCGCCGCCCCAACCAATATCTACGCC-----------------------------------------G
AGAGAGAAAGAGAGAGAGGGAGCCGCCGGCATGAACTGCGTCAAGATTCTCGTACTGCTCTCCCTCATCCCTCTCGCGCT
GAGGGGGGCGTCGCTCCTCGTCGTCCCGTCACCTTCCGCCCCTGACTCTGCATCACGCACCGGCGTCTTGGCTCCGGTGC
CGGCGGAGCAGTGGAGGCAGGAGCGGAGGAGGACGGTGGGCCGTCAGACTCGGGGCGGCCGCGCCACCACCATCGCTCCC
TTCGCCCCGCGGCGGTT------------CGGCGGCTTCTTCCGGGACGACAAGAGGTTCGCGCCGACGGGGTCGAACCC
GCTGCACAACCTGTGATCGGCCGCCGGTGGGGCTGACTGCTTTCGAC-CTCTGTCTTTGCAAAGTCTACCCAACTGGTGC
ACTGTAATTTTCCTCTTGTACATACGGTCTACCGAATCAG----TTATTGATTTTGCATTGATTGA---ATGGGCTGTCT
CTGCGTCTTCTTGGTGTTCAATTTGGTCATATATCCGTTAC-------TAACTTAGCCTGAAAAAAGATTGTCAAGAACC
CAGTGCTGATTTTCTTTTAAAGTTCGATTGGTTTCAGAAATCAGAACAGAGTTTGAGAAAATTTTAGTATACTCATAC--
----TACTACCAAAATTTGGTTTTATTCGTTGCATGAAGACGGCCCTCAAGACTCTTTTTGGGGAAGTTCACAGCAGTTG
ACTCAATTTAGTCACTCGTTCAAGGGGATTTCCGCTTTCCAATGGTAACTTAACCGTTCATGTTTTTTTGGGGGTGATGA
AAAGACTTGCAGTTTCCG---ATGGTAAACGAGGGAAAAAGGAGCATTAGTTGCCCGATTAGACTGCAGC--AAAGTCAC
TTCGATATATA---------------------------------------------------------------------
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>chr1D_632
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-----------------------------------------------------------------------CCCTGACAG
TGTTATGGGTTAAGCTAGAATGCCACTGTTTTGCACGCATCAACTATCAAGTTGGTTTTGGTTGGAACCTACATGGGAAT
GGACAATTCTCAGTGGATTCTATGTATAGAGCTTTGATCCAGTCAGACATGTCAGTTGATAATAAGAAGAAGATTTGGAA
GATAAAGATACCTCTTAAGAATAAAATCTTTGCATGGTATCTTTGTCGCGGAGTCATTCTTACTAAAGATAACCTTATTA
AGAGGAATTGGCATGGAAGTACGCAATGTGTATTTTGTCCGCATGATGAGACAATAAAACATTTGTTCTTCCATTGTAAT
TTGGCTCGTTCTATATGGTTAGTCATCCAGATAGCTTCTGGCCTGTATCCTCCATGTAGTGTTGCTAATATATTTGGCAA
CTGGTTACATGGGATTGATCACAGGTTTAGAATTCTTCTCAGGATGGGAGCGCTTGCCGTGATTTGGTCGCTTTGGCTAT
GTAGAAATGATAAGGTTTTTAACGATAAAAGTACTTCTCTTATGCAGGTTATCTACAGATGTACCGGGACGCTTCGTTTA
TGGTCCTCTCTACAACGAGTGGAGAATCGAGACCTGTTTACGGAGGTGTGTACACGATTGGAGGCTGCGGCGAGGGATAC
TTTTACCCAACATGGGTGGCAGCATGATCTTAGGATTGGGCCACCTATGCTTTAGGCGTCAGATTTCATCTTTGTATTTC
GCCTTCTTCTTTTATATTGGCTTGTCGTGGGGACTTTGTTGGCTGTGTGCATTTTTGCAGAGGCCGGGTGTAATGTTTAA
ACCTTTTAAGTAATAAAGCGCCCTTTTTGAAAAAATCAAGTTGGTTTTGGTCCCAGTAAACTGCGAGGCGAGAGTG----
----------AGTGAGGGATGCCACTGTCATTTCATGATTCCTCATCCGTCCAATCGAAAACCGGTACGAATAATACGCA
ACGCTGGGCTCACTTGCCCCTCTAGAAAGCTGCT--CCCTTTGGCTCATTGCTCC----TCCCTCCCTCCTACGTCAAAT
CACTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCATGACTGCATCCATTCCGTCCATCATTGCC
GATTACGCATTTACGCAAGTTGCCAACCAACGCCAAAACTCACCACTGTCGTCG--TCTCGCTCACCGGCCGCTCCCATA
TATCCGCTCACTCCGCCGCTCCAACCAATTTCTACGCCCATAGGGGGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAG
AGAGAGAGAAACAGGGAGGGAGCCGCTGGCATGAACTGCGTCAAGATTCTCGTACTGCTCTCCCTGATCCCTCTCGCGCT
GAGGGGAGCGGCGCTTCTCGTCGTCCCGTCACCATCCTCCCCTGACTCTGCATCACGCACCGGCGTCTTGGCTCCGGTAC
AGGCGGAGCAGTGGAGGCAGGAGCGGAGGAGGACGGCGGGTCGTCAGGCTCGGGGCGGCCGCGCCACCACCATCGCCCCC
TTCGCCCCGCGGCGGTT------------CGGCGGCTTCTTCCGGGACGACAAGAGGTTCGCGCCCACGGGGTCCAACCC
GCTGCACAACCTGTGATCGGCGGCCGGTGGGGTTGACTGCTTCGGCCTCTCTGTCTTTGCAAAGTCTACCTGACTGGTGC
AGTGTAATTTTCTTCTTGTACATACGGTCTACCGAATCAGTTCCTTATTGATTTTGCATTGATTGATAAATGGGCTGTCT
CTGTGTCTTGTTGGTGTTCAATTTGGTCATATATCCTTTCTAACTTACAG---TAGCCTGACAAAAGGTTGTCAAGAACC
CACTGTTATTTTT----TTAAGTTCGATTGGTTTCAGAAATCAGAACAGAGATTGACAAAATTTAGTACTACCATATACT
CACTTACTACCAAAACCTGGTTTTATTCGTTGCAAGAAGACGGTCCTGAAGACTCTTTTTGGGGAAGTTTACAGTGGTTC
ACTCAGTTTAGCCACTCGTTCAAGGGGATTTGCGCTTTCCCATCGTAACTGAACTGTCCATGTTGG-----------TGC
CAAGAATTGCAGCTTCCTCCAATGGTAAACGAGGGAAAAAGGAGCATCGTTGGCACGATTACATCGCAGCATAAAGTCAC
TTTGATATA-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-
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---------------------------------------------------------------------------S----
---------------S-------------------------------------------------------S--------
-------------------SS----------------S----------------SS------------------------
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-----------S---------------------S-SS-SSSSS-S-SS--------------------------------
-------S---------------------------------------------------------------------S--
---------------------------------S------------S-S--S--S---S---------------------
--------------------S------------------------------S------------------------S---
-----------------SSSSSSSSSSSS---------------------------------------------------
--------------------------------------------S----S------S-----------------------
-----------------------------------------------------S---------SS---------S-S--S
-------------------------------SS-SSS-S-SSSS--SS--------------------------------
S---------S--S-----------------S-------------------------------SSSS---SSS--S-S-S
SSS-SSSSS-S-S-S--SSSSS--S-S--------------S------------S-SS-------------S-----S--
--S---SS-----------------------------S---------------------S--------------------
-----S--------------------------S------SSS----S---------------S-----------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1516
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--------------------------------------------------------TGTTTTGGGAGGCGAGAGTC----
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>reverse_2562
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-GTTGGTGCCAAGACTTGCAG-----------------------------------------------------------
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