>input_sequence_78914
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---------------------------------------------------------------------ATGGGATTCCC
GTCGCCGGTGTTCTCGGAGTCAGAGGTGCCCAGGTTGCTGCTCAACCTCGTCTTCCTGCTCGCCCGCCTCCGCCGCCTCT
CCTCCTGGCTGCTCTGCCTCATCGGCGCCGGCGTCCACGACGACCGCAGCTTTGACCACCCCACTACTCCCGGCATCACC
AACGACCACCATCATCACCAGGGTCAGTACGATGATTCTGAAGACCGCTGCCTCGAGGAGCTGGTGAAGCATTCCCCGGC
CATGCGCTTCGACGCGTTCTCCGGCGCCGGAGACGAAGCTCTGCTGCTGCCGGAGGGGTGCGCGGTGTGCCTCGGCGACT
TCCACTGCGCCGCGTGTGTGCGCCGGCCACGCGGGTGTCGGCATGTCTTCCACCGTGCCTGCCTCGACCGCTGGGCCGCC
CACGGCCACAGCACCTGCCCGCTCTGCCGGGCA------------CCCTTCCTCCTGCCGCTGCCGCTCC---CG-----
----GCGTCGTGA-------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G043400
AGTGTACATTTTTTAGATAGCTATACGTTACTCCAGGAGGACTTCTTGAGAATAAAAAGACCTGTGTTTTTTTCTTGTGA
CTTTTTTTTTGGCGAAGTCATAGCATGTACGTGAGTCATGTTTGGAAGAGGCGTTCAGGTGGGACAAATAGAGAGAACTT
CTTGTGAATATAAAAACTGTTTTTTTTTCTTTTGATTGTTTTTTTAAGAAACATAGCATGTACGTGAGTCATGTATGGAA
TAGACGTTTTGGTGGGACAAATAGAAAGGACTTCTTGAGAAGTGAAGAGGCGTTCAGGTGGAATAAAAAAAGATGACTTC
TTTCATTGTTTTTTTTTTGAGAAATCATAACATGTACGTGAGTCATGTATGAAAGTGGTGTTCAGGTGGGATAAATAGAG
AGGACTTCTTTAGTTATTTTATCCAACGGTTGTAAATAACTAATAGGTAGATCAGGCGGATAATTTTATTTGTTTTCTAG
GATTAACGTGGAGCCTCGATTGGTGCCTCCAATTAGTAAATATAAGATTCCCGCAAAAAAATATTAGTATTATTAGGGGA
TGAAGAGATAAGTGTCCATTTTACGTTAAATGGGGAACATTCGGCCAAAGGAGGAGTAAGGGCC-GAGTCGGGCCGGTAG
CCGCGCCTTTCCGTCCGTGAGTTTGCCAACAAGACTCACCCCACCACCCAACTAATCATTAACCAGGCATTAATCTCGAT
CATCGACTCACAACCTTCATAATTAAGCACGCGGCCGGTACAGTTAGCCTGTGTCTGTCGA------------CCGCAGT
ACATCTCCGTCGCCATCATGC--------------AGCTCACAAATCTCTTCTCCTTTCTCTGTCCAGCTTTAGCT-CTC
CTTATAATGGCCGGCCGGAGATAGCTTTGTGTGCCATGCGAGGCCACTCCTCTTTCTCTAGTTCTGCTCCATTGGG-CTG
CTGGCTGCAAGATTCCCAAGGAATTCTTCATCTTCTTATTCTTCACCGACGATCGAGACCAGCTAGGTAATGGGATTCCC
GTCGCCGGTGTTCTCGGAGTCAGAGGTGCCCAGGTTGCTGCTCAACCTCGTCTTCCTGCTCGCCCGCCTCCGCCGCCTCT
CCTCCTGGCTGCTCTGCCTCATCGGCGCCGGCGTCCACGACGACCGCAGCTTTGACCACCCCACTACTCCCGGCATCACC
AACGACCACCATCATCACCAGGGTCAGTACGATGATTCTGAAGACCGCTGCCTCGAGGAGCTGGTGAAGCATTCCCCGGC
CATGCGCTTCGACGCGTTCTCCGGCGCCGGAGACGAAGCTCTGCTGCTGCCGGAGGGGTGCGCGGTGTGCCTCGGCGACT
TCCACTGCGCCGCGTGTGTGCGCCGGCCACGCGGGTGTCGGCATGTCTTCCACCGTGCCTGCCTCGACCGCTGGGCCGCC
CACGGCCACAGCACCTGCCCGCTCTGCCGGGCA------------CCCTTCCTCCTGCCGCTGCCGCTCC---CG-----
----GCGTCGTGATTCCCGCG-------CCCGTGGGGTGTTGTTT--GCATAATCCGGCGACTGCAGCAGC-------TG
ACTTCTGAGAAGAGTGTTCCGGATTTGTGGCTTTCAGTTGAGTTTTTGTGGAAACAAACCCAATC---------------
----CCATGGCGGTGAGCTGTCCAATTATTTTCTGATCGGCCCCTCCTTTGAAGAGATCATCACAATAACAAATCTACTG
ACTGAAATCCCTTGGTCAAATTAATTTCAAGCTTCAGTTAATTTGGATTTCGCTCAAATAAAATCGGTACAACAACAACA
ACAACAACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGATACATG
TACAACAGTAAGTAGATTATATGAAGTAGATAGAGAGATGGATCTCAATATATGTAGAGGCACTTTTTCTTATAAAGGGT
GGATTCTATTAACTAAAAATGAAGAATTAAGAGGATACAAACACAATGAACACACAGCCGGCCTATTCATAGTTAGGATG
CACATAACCAACACTAACACATATAAGAAAGCACACGTCGACAAATAGCAAAGACATAAAAGACCAAAGCTTTATCTAAG
CGAGAAAAAAGAAAATGATCCCAAAGCAACTACCACTAGTAGAAAAAGGGTCATCTGTCCCGGTTGGTAAGGGCCTTTTG
TCCCGGTTGTTGAACCGGGACTAAAGGGTCGTTACTAATGCCCTAGCCCTTTAGTCCCGGTTCTTACACGAACCGGGACA
GATGGGCCTCCACGTGGCCGCTGCGGCCAGCCCAGGCAGGAGGGCCTTGGTCCCGGTTGGTGACACCAACCGGGACCAAA
AGGCATCCATGCGTCAACATTTCAGTGGCTGGGGTTTTTGTTATTTTTTAAAAAGGGGGAGGGTTTAGGGGGTAATTTAG
GGTGTGTAAGCTAGCTAACAGAGAGAACTGTCCTCTCTTATTTCCGTGCTTGATTTACCAACGCTACTGCTATGCCTAAA
CATGGCTT
>chr7D_593
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--------------------------------GGGTACATTCGGTCAAAGGAGGAGTAACGGC-TGAGTCGGGCCGGTAG
CGGCTCCTTTCGGTCCGTGAGTTTGCCAACAAGACTCACCCCACCACCCAACTAATCATTAACCCGGCATTAATCTCGAT
CATCGACTCACAACCTTCATAATTAATTAAGCACGCGGTACAGTTAGCCTGTGTTTGTCCA------------CTGCAGA
ACATCTCTGTCGCCATCCTGCAACCCCCGTCCTGTAGCTCACAAAGCTCTTCTCCTTCCTCTGTCCAGCTCCTCCTTAA-
-TTATAAAGGCCGGCCGGAGGTAGCTTTGTGTGCCATGCAAGACCACTCCTCTTTCTCTAACTCTGCTTGATTGGG-CTG
AGAGATTGCCAAATA-------A------TTCTTCATCTTCTTCTCCGACGATCGAGATCACCTAGCTAATGGGATTCCC
GGCGCCGGTGTTTCCAGAGTGCGAGGCGCCCAGGTTGCTGCTCAGCCTCCTCGTCCTGATCGCCCGCCTCCGCCGCCTCT
ACTCCTGGCCGCTCCGCCTCATCGGCGCCGGCGTCGACGACGACCTCAGCTTTGACCACCCCACTGCCTCCGGCATCGCC
GACCACCACCGCCGACA---GGAGCTGTACCAC------GAAGACCACTGCCTCGTGGAGCTGGAGGAGCACTCCCCGGC
CATGCGCTTCGACGCGCTCTCCAGCGCCAGAGGCGAAGATCTGCTGCTGCCGGAGAGCTGCGCGGTGTGCTTCGGCGAAT
TCCACGGCGCCGCGCGCGTGCGTCGGCCGCGCGGGTGCCGGCACGTCTTCCACCGTGGCTGCCTCGACCGCTGGGCCGCC
CACGGCCGCCGCACCTGCCCGCTCTGCCGGGTGCCGTTTCTCCCGCCCTTCCTCCTCCCGCTGCCGCTCCTCCCG-----
----GCGTCGTGATTGCCGCG-------GGCACCGTGTGCTGTTTGCGCATAATCCGGCGACTGCAGCAGCCGAATCCTG
ACTCCTGAGCAGAGTGTTCCGAATTTATCGCTTTGGGTTGGGTTTTTCTGGAAACAAACCTAACCATAGCATGGGCCATG
GAGGCCATGGCGGTCAGCTGTTGAAATATTTTCTGATCGGCCCCTCCTTTGTAGAGATTCTCACAATAAC----------
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>chr7A_593
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--------------------------------GGGTACATTCGGTCAAAGGAGGAGTAACGGCATGAGTCAGGCCGGCAG
CGGCTCCTTTCGGTCCGTGAGTTTGCCAACAAGACTCACCCCACCACCCAACTAATCATTAACCAGGCATTAATCTCGAT
CATCGACTCACAACCTTCATAATTAATTAAGCTCGCGGTACAGTTAGCCTGTGTTTGTCCAATG-------CACTGCAGT
ACGTCTCCGTCGCCATCATGCAACCCCCGTCCTGTAGCTCACAACGCTCTTCTCCTTCCTCTGTCCAGCTTTAGCT-CTC
CTTATAAAGGCCGGCCGGAGGTAGCTTTGTGTGCCATTTGAGGCCACTCAGCTTTCTCTAACTCTACTCGATTTGGGCTA
CTTGATTGCCAAAGG-------ATTCTTCTTCTTCCTCTTCTTCTCCCACGATCGAGATCAGCTAGCTAATGGGGTTCCC
GGCGCCGGTGTTCTCAGAGTGCGAGGTGCCCAGGTTTCTTCTCAACCTCGTCTTCCTGCTCGCCTGCCTCCGCCGCCTCT
CCTCCTGGCTGCTCCGCCTCGTCGGCGCTGGCGTCGACGACGACCCCAGCTTTCACCACCCCACTACCTCCGGCATCACC
GACTACCACCGCCATCACCGGGAGCAGTACGATGATTATGAAGACCGCTGCCTCGAGGAGCTGGAGAAGCACTCCCCGGC
CATGCGCTTCGACGCGCTCTCCAGCGCCAGAGGCGAAGATCTGCTGCTCCCGGGGAGCTGCGCGGTGTGCCTCGGCGACT
TCCACGGCGCCGCGCGCGTGCGTCGGCCGCGCGGGTGCCGGCACGTCCTCCACCGCGCCTGCCTCGACCGCTGGGCCGCG
CACGGCCACAGCACCTGCCCGCTCTGCCGGGCGCCGTTCCTCCCGCCCTTCCTCCTGCCGCTGCCGCTGC---CG-----
----GCGTCATGATTCC-------------CTCCGGCTGTTGTTT--GCATAATCCGGCGACTGCAGCAG----------
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>chr4A_593
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--------------------------------GGGTACATTCGGTCAAAGGAGGAGTAACGGG-TGAGTCGGGCCGGTAG
CGGCTCCTTTCGGTCCGTGAGTTTGCCAACAAGACTCACCCCACCACCCAACTAACCATTAACCAGGCATTAATCTCGAT
CATCGACTCACAACCTTCATAATTAATTATGCTCGCGGTACAGTTAGCCTGTGTTTGTCCACTGCACTGCACACTGCAGT
ACGTCTCCGTCGCCATCATGCAACCCCCATCCTGTAGCTCACAAAGCTCTTCTCCTTCCTCTGTCCAGCTTTAGCT-CTC
CTTATAAAGGCTGGCCGGAGGTAGCTTTGTGTGCCATGTTAGACCACTCCGCTTTCTCTAACTCTGCTCGATTGGG-CTG
CAAAACTGCCAAATA-------A------TTCTTCATCTTCTGCTCCGACGATTGGGATCAGCTAGCTAATGGGGTTCCC
GGCGCCGGTGTTCTCAGAGTGCGAGGTGCCCAGGTTGCTTCTCAACTTCGTCTTCCTGCTCGCCCGCCACCGCCGCCTCT
CCTCCTGGCTGCTCCGCCTCGTCGGCGCTGGCGTCGACGACGATCTCAGCTTTGACCACCCCACTACCTCCGGCATCACC
GACTACCACCGCCATCACCGGGAGCAGTACGATGATTATGAAGAACGCTGCATCGAGGAGCTGGAGAAGCATTCCCCAGC
CATGCGCTTCGACGCGCTCTCCGGCGCTGGAGACGTAGCTCTGCTGCTGCCGGAGGGGTGCGCGGTGTGCCTCGGCAACT
TCCACGGCGCCGCGCACGTGCGCCGGCCGCGCGGGTGCAGGCACGTGTTCCACCGCGCCTGCCTCGACCGCTGGGCCGCA
CATGGCCACAGCACCTGCCCGCTCTGCCGGGCGCCTCTCCTCCCGCCCTTCCTCCTGCCGCTGCCGCTTC---CG-----
----GCGCCGTGATTCC-------------CGTGGGATGTTGTTT--GCATAATCAGGCGACTGCAGTAGCCGAATCCTG
ACTCCTGAGCAGAGTGTTCGGAATTTATCGCTTTCGGTTGGGTTTTTCTGGAAACGAACTCAA-----------------
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>chr7A_625
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-----------------------------------------------------------------GAGTCGGGCCGGCAG
CCGCTCCATTCGGTCCGTGAGTTTGCCAACAAGACTCACCCCACCACCCAAATAATCATTAACAAGGCATTAATCTCGAT
CATCGACTCACAACCTTCATAATTAATTAATTGAGTATGGTTTTCTGTAGCTCAGGCTACGTGGTACCCCTTATCTTTGC
CATCCATTTTTG-CATCATGCC--------------GCTCACAAAGCTCTTCTCCTTCCTATGTCCAGCTTTAGCTCCTC
CTTATAAAGGCCAGCCGGTGGTAGCTTCGTGTGCC-------ACCACTCCGCTTTCTCTAACTCTGCTCGATTGGG-CTG
CAAGAGTGCCAAAGA-------A------TTATT----TTCTTCTTCGACGACCGAGATCAGCTAGCTAATGGGATTCCC
GGCGCCAGTGTTCTCAGAGTGCGAGGTGCCCAGGTTGCTGCTCAGCCTCCTCGTCCTGATCGCCCGCCTTCGCCGCCTCT
ACTCCTGGCCGCTCCGCCTCGTCGGCGCCGGCGTCGACGACGACCTCAGCTTTGACCACCCCACAACCTCCGGCATCGCC
GACCAGCACCGCAGACA---GGAGCTGTACCAC------GAAGACCACTGCCTCGTGGAGCTGGAGGAGCACTCCCCGGC
CAAGCGCTTCGATGGGCTCTCCAGCGCCAGAGGCGAAGATCTGCTGCTGCCGGAGAGCTGCGCGGTGTGCCTCGGCGACT
TCCACGCCGCCGCGTGCGTGCGCCGGCCGCGCGGGTGCCGACACGTGTTCCACCGCGCCTGCCTCGACCGCTGGGCCGCG
CACGGCCACAGCACCTGCCCGCTCTGCCGGGCGCCGCTCCTCCCGCCCTTCCTCCTGCCGGTGCCGCTGC---CGCTCCT
CCCGGCGTCGTGATTGCCGCAGCCCGCAGGCACCGTGTGTTGTTTGCGCATAATCCGGCGACTGCAGCAGCCGAATCCTG
ACTCCTGAGCAGAGTGTTTCCAATTTATTGCTTTGGGTTGGGTTTTTCTGGAAACAAACCTAGCCATAGCATGGGCCCTG
GAGGCCATGGCGGTGAGCTGTTGAAATATTTTCTGATCGGCCCCTCCTTTGTAGAGTTTCTCACAATAACA---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S--------------S---S----------------
----S------S--------------------------------------------------------------------
--------------------------SS-S---SS-------------------S----S--------------------
---------------------------------------------S-----------S----------------------
-------S------------S---------------------------------------SS-------S----------
--S-S-SSSSS-S-SSSSSSSS-------S-----S-S------S-------------S-------S-------------
-S-------------S----SS----------------------------------------------------------
--------------S--------------------S---------S---------------------SS-----------
S--S------SS-------S--SS-------------S--------------------------S---------------
----------------S---------------------------------------------------------------
-----S----------S-----------S--------S-----S------------------------------------
--------------------------------S-----------------------------------------------
----------------------------SS--------------------------------------------------
---S-----S-----------S----S-S------S----S------S---------------S----------------
---------------------SS--S-------------------------S------SS-----------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_300
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----------------------------------------AGTGAAGAGGCGTTCAGGTG--------------------
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>reverse_2042
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-----------------------------------------CACAATGAACACACAGCCGG-------------------
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