>input_sequence_78900
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-------ATGCCTCCCACCACCAAGTTCCTCCTCCTCCTCCTCCTCCCCGTGGCAACAGCCGCCGCAAC---CTTTGCTC
TCGGCCATGGCACCGGCACCGGCACAGCTGTCTGCGTGCCGCGGGAGCGTGATGCCCTGCTGGCGTTCAAACGCGGTGTC
ACACATGACCCCTCGGGCCGCCTTGCCTCGTGGCGGCGAGGCAGCGACTGCTGCCGGTGGAGGGGCGTAAGGTGCAGCAA
CCGGACTGGCCACGTCCTCCAGCTTCGACTTGGAAATAGCTACTCGTACTTTGATCAGGAATTTTATACTGGTCGGATAA
CATCTTTGGATGGCCAGATAAGTCCATCTCTATTTTCTTTGGAGCATTTGGAGCACCTTGATCTCGCCTGCAATTTTCCG
TATATATGTAGCAATTGCGGTCATGTTCCAAAACTATGGGGCTCTCTAAAAAACTTGAGATACCTGAACCTCCCA-----
------------------------------------------------------------------------TGTACAAG
TCGATGA-------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G033600
TGATGACGGGCCAACATCAGATGGATGTAGTTGCGCCAACGGGTGAAGTTTG-TCCCGTCGAGAGTGAGCTTGAAGTCGA
GGATGCCGACGAGGCTGGCCGGGAGAGGTGGAGGAGGGGCGGAGGAGGAAGCCAGAGGCCCAGAGGTGGGTGGAACGGCA
GCGAGGTGGAGGGCACCGGAGCCTGAACTCTCATCTGTAGCGGGGGCGCAAGGGCGCGGGGCAGTGGAGTTGGAGGCGTC
GACGGGGTTGCCGGCGGCAAGGGCCGCAGTAGTGGCATCAGCAGCAGCGGCTTGATCCGCATCAGCCGTGCGCGTGGGAG
-GG------------GGAGGGGATGACATGGCTCTGATTACCAACAAGACAAGTGAATCAC-CGCT--GTGTATTGCCTT
AGTCAGTCTCGGTTACATATACAGGAGGAAGTCCCTACATGCAGGGCACTATC-CAGGAGGTGGCGTTAGACTAGGAACG
CCCTTATAGACTAGGCCTACTGGTTACAACAAACTCATCAGG--ATATACATCGCAGAGAT---TACATAACGTGACATG
ACGTGGTAGTTCAACAATAGCGGCCAAACCATTGTGTTTTGGACTCATCGTTAGATTTGTTTGTACCGTTCCCTGTCCGG
CAGTCCGGCACGGCGGTACGGCAAGCGTCATCGATTAGGCGTGCGATTCCAAAGCCTACCTCGATATGTTCACAACACCA
AAGTCACGCGTACATCACCGGTGTATGGCCAGTGATCATAGCGTGTGCCTCGATCGGTGGAATTCAACAGTCCGCGTGAC
GTAACCGTTG-----------GGGCGAACGACACTGGGAGCAAACGAACATAGACTTGACTCAAGGCGTTACCCATGCGG
CCACTGGAACCCACCCACCGTTGACGCCCGCCTCCGACCGTCGATGTAAAATATCTCTCTTACCGTCCAGTTAATTCTTC
TGTACGC-------------GGAGTATAAATGATGGGCGTGTGTGTGCTCCCTTGAGTACTCGTGCACACAGCCTTCCCA
AACTACCATGCCTCCCACCACCAAGTTCCTCCTCCTCCTCCTCCTCCCCGTGGCAACAGCCGCCGCAAC---CTTTGCTC
TCGGCCATGGCACCGGCACCGGCACAGCTGTCTGCGTGCCGCGGGAGCGTGATGCCCTGCTGGCGTTCAAACGCGGTGTC
ACACATGACCCCTCGGGCCGCCTTGCCTCGTGGCGGCGAGGCAGCGACTGCTGCCGGTGGAGGGGCGTAAGGTGCAGCAA
CCGGACTGGCCACGTCCTCCAGCTTCGACTTGGAAATAGCTACTCGTACTTTGATCAGGAATTTTATACTGGTCGGATAA
CATCTTTGGATGGCCAGATAAGTCCATCTCTATTTTCTTTGGAGCATTTGGAGCACCTTGATCTCGCCTGCAATTTTCCG
TATATATGTAGCAATTGCGGTCATGTTCCAAAACTATGGGGCTCTCTAAAAAACTTGAGATACCTGAACCTCCCA-----
------------------------------------------------------------------------TGTACAAG
TCGATGACAACACGTTGCTTCGTCAGCTTGGTAACCTCTCTAAGCTGCAGTATCTTGACCTTTCCTACACCACCTACACC
ATACGCGTGCAACCAACAGATTTTTTAAGCTTAACAAATCTACCTTTGCTACACCATCTTGACCTTGGTGGGTTCAATCT
CACCATGGTACATGATTGGCCTCGTATCGTGAATATGATTCCGTCTTTGCAAGTTCTCTATCTTTCTGGTTGCTCGTTTC
ATAAAGCCAACCAACAGCTCCCACGCTTGAACCTCACAAAACTTGAGAGGCTTGATCTCAGCTACAACCATTTTGATCAC
CCCTCCGAGTCCTGTTGGTTTTGGAATTTGACAAGTCTCAAGTACCTCAACCTTGGAGAAACCTTTTTGTATGGTCATTT
TCCCAAGACACTAGGACAAATGACATCCCTTCAAGTCTTTGACTTTTCATACAACAAGTATCTCGACGGCGGCCCCGGCG
GCATCATAGCGCCAGGGTTGATGAGAAACCTATGCAATTTGGAAGTGCTAAACCTTGAAAAAGGCCTCTCGTATGGGAAC
ATGACAGAGTTGTATGAGAGCTTGCCACATTGCTCGTCCAGCCCACTAAGAGAACTGTATTTGGATGGAAACAATATCAC
TGGGACCCTGCCAGCTGGGATTGCCAAATTTACCAGTTTGGCCAGTCTCGTCCTCTCTGATAACCGTATGACTGGACATG
TGCCCACTGAGATTGGTAGGCTCAACGGTTTGATTTCCCTAGACCTAAGAAACAACAATTTGACAGGTGTCATCACCGAA
GAACATTTCTATGGTTTCACGAGCTTACAGTATATAGATTTATCTAATAATCCTTTGAAGATTATACTAGATCCTGGTCT
GCTACCCCCCCTGAAACTAGAGCAAGCATCTTTTGCATCTTGCCAAATAGGTCCTAATTTTCCTTCTTGGCTTCGGTTGT
TGCCTAGAGCTGATTACATTGATATGTCAAACACAGGTATAACCGGT
>chr6D_1
TGATGACGGGCCAACATCAGATGGATGTAGTTGCGCCAACGGGTGAAG-TTGGTCCCGTCGAGGGCGAGCTTGAAGTCGA
GGATGCCGGCGAGGCTGGCCGGGAGGGGTGGAGGAGGGGCGGAGGAGGAAGCTAGAGGCGCAGACTTGGGTGGAACTGCG
GCGAGGGGAAGACCACCGGAGCCTGAACTCTCATCTGTAGGGGGGGCACGAGGGCGCTGGTCAGTGGAGTTGGGGGCGTC
GACGGGGTTGCCGGCGGCAAGGGCCG------------CAGCAACAGCGTCTTGATCCGCATCAGCCGTGCGCGTGAGAG
-AG------------GGAGGGGAAGACATGGCTCTGATA-CCAACAAGTCAAGTGAA--TTGCGTT--GTGTATTGCCTT
AGGCTATCAGGGTTACATATACAGGTGAAAGTCCGTACATGCAGGGCACTATC-CAGGAAGTGGCGTTAGACTAGGAACA
CCCCTATAGACTAGGCCTACTGGTTACAACAAACACACCAAGATATATATATCACAGAGGG---TACATAACGTGACA--
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>chr1A_1
TGATGACGGGCCAGCATCAGATGGATGTAGTTGCGCCAACGGGTAAAG-TTG-TTCCGTCGAGAGCAAGCTTGAAGTCAA
GGATGCCGGCGAGGCTGGCCGGAAGAGGTGGAGGAGTGGCGGAGGAGGAAGCCAGAGGCCCAGAAGTGGGTGGAACTGAA
GCGAGGGGGAGAGAACCGGAGCCCGAACTCTCATCTGTAGCGGGGGCGCGAGGGCGCGGGGCTATGGAGTTGGAGGCGTC
GACGGGGTTGCCGGCGGCAAGGGCCGCAGCGGCGGCATCAGCAGCAGCGGCTTGATCCGCATCAACCGTGCGCGTGGGGG
-AG------------GGAGGGGAAGACATGGCTCTGATTACCAACAAGACAAGTGAATCACACGCT--GTGTATTGCCTT
AGTCTGTCTCGGTTACATATACACGAGGAAGTCCCTATATGCAGGGCACTACC-CAGGAGGTGGCGTTAGACTAGGAACG
CCCCTATAGACTAGGCCTACTAGTTACAACAAACTCATCAGG--ATATACATCACAGAGAT---TACATAATGTGACGTC
ACGTGGTAGTTCAACACATA------------------------------------------------------------
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>chr7A_1
TGATGACGGGCCAACATCAGATGGATGTAGTTGCGCCAACGGGTAAAG-TTGGTCCCATCGAGAGCGAGCTTGAAGTCGA
GGATGTCGGCGAGGCTGGCCGGAAGAGGTGGAGGAGGGGCGGAGGAGGAAGCCAGAGGCCCAGAAGTGGATGGAACTGCA
GCGATGGGGAGAGCACCGGAGCCTGAACTCTCATCTGTAGCGGGGGCGCGAGGGCGCGGGGCAGTGGAGTTGGAGGCGTC
GACGGGGTTGCCGGCGGCAAGGGCTGCAGCGGCGGCATCAGCAGCAGCGGCTTGATCCGCATCAGCCGTGCGCGTGGGGG
AAG------------GGAGGGGAAGATATGGCTCTGATTACCAACAAGACAAGTGAATCACACGCT--GTGTATTGCCTT
AGTCTGTCTCGGTTACATATACAGGAGGAAGTTCCTATATGCAGGGCGCTATC-CAGAAGGTGACGTTAGACTAAAAACG
CCCCTATAGACTAGGCCTACTAGTTACAACAAACTTATCAGA--ATATACATCAGAGAGAT---TACATAACGTGACATG
ACATGGTAGTTCAACA----------------------------------------------------------------
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>chr7A_1
TGATGACGGGCCAGCATCAGATGGATGTAGTTGCGCCAACGGGTAAAG-TTGGTACCGTTGAGAGCGAGCTTGAAGTTGA
GGATGCCGGCGAGGCTGGCCGGAAGAGGTGGCGGAGGGACGGAGGAGGAAGCCAGAGGCCCAGAAGTGGGTGGAACTGCA
GCGAGGGGGAGAGCACCGGGGCCTGAACTCTCATCTGTAGCGGGGGTGCGAGGGCGCGTGGCAGTGGAGTTGAAGGCGTC
GACGGGGTTGCCGACGGCAAGGGCCGCAACGACGGCATCAGCAGCAGCGGCTTGATCCGCATCAGCCGTGCGCGTGGGGG
TGGGGGGAGGGGGGAGGAGGGGAAGATATGGCTCTGATTACCAACAAGACAAGTGAATCACACGCT--GTGTATTGCCTT
----TGTCTCAGTTACATATATAGGAGGAAGTCCCTACATGCAGGGCACTATC-CAGGAGGTGGCGTTAGACTAGGAACG
CCCCTATAGACTAGGCCTACTAGTTACAACAAACTCATCAGG--ATATACACTACAGAGAT---TACATAATGTGATATG
ACGTGGTAGTTCAACA----------------------------------------------------------------
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>chr2D_1
TGATGACGTGCCAGCATCAGATGGATGTAGTTGCGCCAACGGGTGAAG-TTGGTCCCGTCGAGAGTGAGCTTGAAGTCGA
GGATTCCGGCGAGGCTGGCCGGGAGAGGTGGAGGAGGGGCGGAGGAGGAAGCCAGAGGCCCAGAGGTGGGTGGAACGGCA
GTGA-GGGGGGATCACCGGAGCCTGAACTCTCATATGTAGCGGGGGCGCGAGGGCGCGGGGCAGTGGAGTTGGAGGCGTC
GACGGGGGTGCCGGCGGCAAGGGCCGCAGCGGCGGCATCAGCAGCAGCGGCCTGATCCGCATTAGCCGTGCGCGTGGGGG
-AG------------GGAGGGGAAGACATGGCTCTGATA-CCAAACTGGAATATGGA--TCTCGTG--TTGCAATGCCAT
CGGCAGGC-CAGTTACATATACAAGGAAACAGCCCTACATGCAGGGCACGATCACGGGAGGTGGCGCTAGACTAGAAAAC
CTCCTGAAGACTAGGACTACTAGTTACAACAATGATCA---G--ATATACATCACATGGGTACATACGTAACGTGACA--
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>chr4B_1
TGATGACGAGCCAGCATTAGATGGATGTATTTGCGCCAACGGGTGAAG-TTGGACCCGTCGAGAGCGAGCTTGAAGTCGA
GGATGCCGGCGAGACTGGCCAGGAGAGGTGGAGGAGGGGCGGAGGAGGAAGCTGGAGGCCTAGAGGTAGGTGGAACGGCA
GTGAGGGTGAGATCACCGGAGCCTGAACTCTCATCTGTAGCGGGGGCGCGAGGGCGCGGGGCAGTGGAGTTGGAGGCATC
GACGGGGTTGCCGGCGGAAAGGGCCGCAGCGGCAGCATCAGCAGCAGCGGCCTGATCCGCTTCGGCCGCGCGCGTGGGGG
-AG------------GGAGGCGAAGACATAGCTCTGATAACCAAACTGGAATATGGATCTCGTGTG--TTGCAATGCCAT
CGGCAGGC-CGGTTACATATACATGGAAACAACCCTACATGCGGGGCACGATCACATGATGAGGTGCTAGACTTGCAAAC
CTCCTGAAGACTAGGACTACTAGTTACAAAAATAATCA---G--ATATACATCACAAGAGTACATACATAACGTGACA--
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>chr5D_2
-GATGACGGGCCAACATCAGATGGATGTAGTTGCGCCAACGGGTGAAG-TTGGTCCCGTCGAGAGCGAGCTTGAAGTCGA
GGATGCCGGCGAGGCTGGCCGGGAGAGGTGGAGGAGGGGCGGAGGAGGAAGCCAAAAGCCCAGAGGTGGGTGGAACTGCA
GCGAGGGGGAGGGCACCGGAGCATGAACTCTCATCTATAGCGGGGGCGCGAGGGCGCGGGGCAGTGGAGTTGGAGGCATC
GACGGGGTTGCCGGCGGCAAGGGCTGCAGCGGCGGCATCAGCAGCGGCGGCTTGATCCGCATTAGCCGTGCGCGTGGGGG
-AG------------GGAGGGGAAGACATGGCTCTGATTACCAACAAGACAAGTGAATCACACGCT--GTGTATTGCCTT
AATCAATCTCGGTTACATATACAGGAGGAAGTCCCTACATGCAGGGCACTATC-CAGGAGGTGGCGTTAGACTAGGAACG
CCCCTATAGACTAGGCCTACTGGCTACAACAAACTCATCAGG--ATATACATCACAGAGAT---TACATAACGTGACATG
ACGTGGTAGTTCAACA----------------------------------------------------------------
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>chr6B_4
---TGACGAGTCAGCATCAGATGGATGTAGTTGCGCCAACGGGTGAAG-TTGGCGCCGTCGAGAGTGAGCTTGAAGTCGA
GGATGCCGGCGAGACTGGCCGGGAGAGGTGGAGGAGGGGCCGAGGAGGAAGCTGGAGGCCCAGAGGTAGGTGGAACGGCA
GTGAGGGTGAGATCACCGGAGCCTGAACTCTCATCAGTAGCGGGGGCGCGAGGGCGTGGGGCAGTGGAGTTGGAGGCATC
GATGGGGTTGCCGGCGGCAAGGGCCGCAGCGGCAGCATCAGCAGCAGCGGCCTGATCCGCTTCGGCCGCGCGCGTGGGAG
-AG------------GGAGGCGAAGACATGGCTCTGATAACCAAACTGGAATATGGATCTTGTTGTGTTTACAATGCCAT
CGGCAA-C-CGGTTACATATACAAGGAAACAACCCTACATGCAGGGCACGATTACATGATGAGGCGCTAGACCAGGAAAC
TCCCTGAAGACTAGGACTCCTAGTTACAACAATAATCA---G--ATATACATCACAATAGTACATGCATAACGTGACA--
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>chr6A_714
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----------------ACCGGTGTGTGGCCAGTGATCGTAGCGTGTGCCTCGATCGGTGGAATTTAACAGCCCGCGGCGA
CGTAAGCGTAGGGGAAGCCATGGGCGAACGACACTGGGAGCAAACAAACATAGACTTGACTCAAGGCGTTACCCATGCGG
CCACTGGAACCCACCCACCGTTGACGCCCGCCTCCGACCATCCAAGT-AAATATCTTTGTTACCGTCCAGTTAATTCTTC
TGTACGCAATGACTGTACGCGGAGTATAAATGATGGGCGTGTGTGTGCTCCCTTGAGTACTCGTGCACACAGCCTTCCCA
AACTACCATGCCTCCCACCACCAAGT------TCCTCCTGCTCCTCCTCGTGGCAACAGCCGCCGCAACGACCTTTGCTC
TCGGCCATGGCACCGGCACCGGCACGGCTGTCTGCGTGCCGCGGGAGCGTGATGCCCTGCTGGCGTTCAAACACGGTGTC
CCATATGATCCCTCGGGCCGCCTCGCCTCGTGGCGGCGAGGCAGCGACTGCTGCCGGTGGAGGGGCGTAAGGTGCAGCAA
CCGGACTGGCCATGTCCTCCAGCTTCGACTTGGAAATAGCTACTCGTACTTTGATCAGGAATTTTATACTGGTCGGATAA
CATCTTTGGATGGCCAGATAAGTCCATCTCTATTTTCTCTGGAGCATTTGGAGCACCTTGATCTCGCCTGCAATTTTCCA
TATATATGTAGCAATTGCGGTCATGTTCCAAAACTATGGGGCTCTCTAAAAAACTTGAGATACCTGAACCTCTCCCATGT
ACCAGTCCATGACGACACGTTGCTTCGTCAGCTTGGTAACCTGTCTAAGCTGCAGTATCTCGACCTCTCCGGTGTACAAG
TCGGTGACAACACGTTGCTTCGTCAGCTTGGTAACCTCTCTAAGCTGCAGTATCTCGACCTTTCCTACACCACCTACACC
ATA---GTGCAACCAACAGATTTTTTAAGCTTAACACATCTACCTTTGCTACACCATCTTGACCTTGGTGGGTTCAATCT
CACCATGGTACATGATTGGCCTAGTATCGTGAATATGATTCCTTCTTTGCAAGTTCTCTATCTTGCTGGTTGCTCGCTTC
ATAATGCCAACCAACAGCTCCCACGCTCGGACCTCGCAAAACTTGAGAGGCTTGATCTCAGCTACAACCATTTTGATCAC
CCCTCCGAGTCCTGTTGGTTTTGGAATTTGACAAGTCTCAAGTACCTCAACCTTCGAGAAACCTTTTTGTATGGTCATTT
TCCCAAGACACTAGGACAAATGACATCCCTTCAAGTCTTTGACTTTTCATACAACAAGTATCTCGACGGCGGCCCCGGCG
GCATCATAGCGCCAGGGTTGATGAGAAACCTATGCAATTTGGAAGTACTATACCTTGAAGAAGGCCTCTCGTATGGGAAC
ATGGCAGAGTTGTATGAGAGCTTGCCACATTGCTCGTCCAGCCGACTAAGAGAACTGTATTTGAATGGAAACAATATAAC
CGGGACCCTACCAGCTGGGCTTGCCCAATTCACCAGTTTGGCCACTCTCATCCTCTCTGATAACCATATGACTGGACCCG
TGCCCACTGAGATTGGTAGGATCAACGGTTTGATTTCCCTAGACCTAAGAAACAACAATTTGACAGGTGTCATCACCGAA
GAACATTTCTATGGTTTCACAAGCTTACAGTATATAGATTTATCTAATAATCCTTTGACGATTATAGTAGATCCTCGTCT
GCTACCCCCACTGAAACTAGAGGAAGCATATTTTGCATCTTGCCAAATAGGTCCTCATTTTCCTTCTTGGCTTCGGTTGT
TGCCTAGAGCTGATTACATTGATATGTCAAACACGGGTATAACCGGT
>SNPs
------------------------------------------------S-------------------------------
--------S-----------------------------------------------------------------------
------S------------------------------------------S------------------------------
-----------------------------SS-S-----------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
---S-------------------------------------------------S--------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------S------------S--------------------------S-----S-----SSSS
SSS-SSSS-S-----------------------------------S----------------------------------
---------------------------------------S--S-S--S--------S-S---------------------
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--------------------------SSSSSS-------S-------S--------------------------------
-------------------------S----------------------------------------------S-------
S--S----S--------------S--------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------S----------------------------------------S
------------------------------------------------------------------------S-S-----
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---S---------------------------------------------------S------------------------
---SSS------------------------------S-------------------------------------------
----------------------S-------------------S---------------------S-----------S---
----S----------------------S-S-----S--------------------------------------------
------------------------------------------------------S-------------------------
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----------------------------------------------S---S--------S--------------------
---S---------------------------------------S-------------------S-------------S--
S--------S---------S-----S----S-------------S----S---------------S-----------SS-
--------------------S-----------------------------------------------------------
--------------------S-------------------------------------S-------S--------S----
---------S------------S------S-------------------------S------------------------
----------------------------------S------------
>forward_639
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-----------------------------------------------------------TTTGTACCGTTCCCTGTCCG-
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>reverse_1684
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---CGCGTGCAACCAACAGATTT---------------------------------------------------------
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