>input_sequence_78896
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-----ATGGCTCTGGGAAGAGGCAGTGCGAGGAACGGTGCCGCCGGCCTCGGCGCGGCGGTGCTGATGCTCGGCCTGCTT
GTGATGAGCGCCGAGGCGGCCAAGTACACGGTCGGCGACTATGGGGGCTGGAAGTTCAACGTCGCCGGTTGGGCCAAGGG
CAGGACCTTCCGCGCCGGCGACGTGCTCGGTGAGTTGATGTCTGCTTCATTGTTAGCCGCCGCTCGCTAGTTTCTAACAG
C-----ATACGTTTGTTCGTGACACGATGCGCTTGTGAGTGTGTG----------------------------TGCAGAG
TTCAAGTATAACGGGGCGGTGCACGACGTTGCGGCCGTGGACGCGGCGGCGTACCAGAGCTGCGTGGTGCCCAAGGGCAA
AAGGGCGCTGCGCAGCGGGCACGACAAGGTGAGGCTGGTCAAGGGGATGCACTACTTCATCTGCACCGTGCGCGGACACT
GCAAGGCCAACATGAAGATCGCCGTCAAGGTCATCTAG------------------------------------------
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>chr6B_1_TraesCS6B01G322900
GCAGCCGTCCGTAGAGGAGGCAGATCCGGTCCGGGCCAGAGAGGAGACGACCGGTGACGGAGGGGGCCGGCAGCGGCCGG
AGACAGGCAGGCTAGGGACAGGGCGCACAGAGTTGCATCGTGCGGGGGGAAGGGGCTAACCTAGCATATGATACCATGTT
GGATAATTAGCAACTACTAGTATTGACTGAGGGCCAAAGGCCAATACATATACATGTATGATAAAGTGCATGAAAACCCC
TTATACAATAGGATATACAAAAAAGGGACTATACACATTTAACAAGATGCAAGAGATGGATCTATAGTAAACAACTATGG
AGAACTATGATGTAACTTTATGTTTAACCTTTGACCTTCTATTGTTTCGTTT----------------------------
---------TAAAGTCGGATTGTTTACCCAGAAACCAAAAAAAGGTTGTACTAAAAAAAGAT--TTTTTTTACTGTGTAG
CAATAATAACACTTCGTGTCCACGACAAGTCTACTGGCGAGATGCACTTCCCAGATCGATCCAACATGCAATGAAACTCC
CCCTTCCATCCCCTCAAAAAAAGAAAAGAAAAATGCAATGAAACTTCTTTCCAGCGTCAAAGATAGGCACCGCCACCTTT
GATTTTCAGTTTCAGATTTGGATGGGAAGGCCTG-CTGCACACAGGGCGCACGACGAAATCATCAGACATGGCTGCTATT
TTACTCCTGCAAGAGCTCGTCTTTTTGTTGCGTTCCTCCGCTCCCCGCCACCGACTAGCTCTGGACTAGCTCGGTAGCCG
AAGCAAAAGCACCGCAACCTGCCAACGCCGGAGCGGGAACGCCGGCCGGATTCACGCGCACCAACTCCACCCGCGCGCTC
TCCTCAACACTACTGCCAGCCACTAAATACTCGGTGCCTAGCTAGCTCGACCGCGGAAGCACGCGCTATAAGAGGCCACG
CCGGTGCGTGGCAACCGGCAGCTCCTTCGATCTTGTCAGCCAGTTGGAACTTGAGTGTCACTGTCACTAGTAGTGCGC--
---CGATGGCTCTGGGAAGAGGCAGTGCGAGGAACGGTGCCGCCGGCCTCGGCGCGGCGGTGCTGATGCTCGGCCTGCTT
GTGATGAGCGCCGAGGCGGCCAAGTACACGGTCGGCGACTATGGGGGCTGGAAGTTCAACGTCGCCGGTTGGGCCAAGGG
CAGGACCTTCCGCGCCGGCGACGTGCTCGGTGAGTTGATGTCTGCTTCATTGTTAGCCGCCGCTCGCTAGTTTCTAACAG
C-----ATACGTTTGTTCGTGACACGATGCGCTTGTGAGTGTGTG----------------------------TGCAGAG
TTCAAGTATAACGGGGCGGTGCACGACGTTGCGGCCGTGGACGCGGCGGCGTACCAGAGCTGCGTGGTGCCCAAGGGCAA
AAGGGCGCTGCGCAGCGGGCACGACAAGGTGAGGCTGGTCAAGGGGATGCACTACTTCATCTGCACCGTGCGCGGACACT
GCAAGGCCAACATGAAGATCGCCGTCAAGGTCATCTAGTCTAGAGACTAGAGTGGCTAGCTACTTGTTTTCAACTA----
-------CAGATCCAGCCAAAGCTTTGGACTAAAGCTTTTTAGTTTGCTTAATGCTTAAACCAACTGTTGGTTTGCTTCC
CCGTTGATTTGCCTTG-CTCTTGTTCTAGATGCGGCAATCGCGAGTTATAATTCCTGTTAATTTGAATATGGGTCTGAAG
GTTTGCTAAAAAACTGGATGGACTAGCGCTTTCC--TCCTTTGTTGACACAGGAAAAACCTAACCAGTAAATCTAGAAAA
AAGGGG---AAAACCTAACCAGTAAGGAAGAGATAGCAAATCGGGCACTCACGGGAAGATTACG--ACAAGAGGTTCCAT
TTATTATGAAACTTGTACTAGTGCCATAATATATGGATCGGATGTTTGCATACCTTCTCTCCTACTTAAAAAA----TAC
TAAGG-TTTCATCATAAAGATCCACAAACCTTGTCATGATAAATTTCATAG------GTACCCACTATGCACCGTCGTAG
TTCTAAGC---TCTT------------------------------GAAGATCACGTTTCTGTCATGTCAGAG----TAC-
-ACTTCTTTTCG-CCAGGGGTGCGATAA---TCACTCGTCTTTGTCGTCTTTCTT---CGGCTTACGGTATGTTTCCTCA
ATGTGCTTTGCCAGGAAAACATACGTGTTGAACAGCTTCTTGACATTTGGAACGTTGTAGTTCTGAGCTACATAGACACC
GCACCCCACTCCCACCAGAAACTTGAAGCTACCACCGAAAAGCCCCATTGCGAGAAAACCTGGAGACGATGATATAA---
-GGGTTATGTGCATGCATTTCGACACAGGATGT------AAAAAAAACAT-GGTAAATAAGAAGATGAC--------AC-
AAAAGTTTGCTGTCATGTGGTAGAAACACACTACTCTA--------TCCAAAC-ATAAAGCTAAATCACACATATTTAGT
ATTGAAGTACTTG-CAG--AAGAAAGT-ACAGAAGTTACATTTACTGGCATTGTGTAATAACGGACGTTTGATCATTACA
GACAGAATTCCCAACGTCAGGATGTTG
>chr6D_285
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--------------------------------------------AGATGCAAGAGATAGATCTATAGTAAACGACTATGG
AGAACTTTGATGTAACTTTATGTTTAATC-TTGACCTTCTATTGGTTCGTTTTCATTCAATTTGATGTACTTTGTCCAAT
TTATATCAGTAAAGTCGGATTGTTTACCCAAAAAAT---------------------AAGAT--TTTTTTTACTGGGTAG
CAATAATAACACTTCGCGTCCACGACAAGTCTACTGGCAAGATGCACTTCCGAGATCGATCCAACATGCAATGAAACTTG
CCATTCCCTCCCCTAAA-----------AAAAATGCAATGAAACTTCTTTCCAGCGCCAAAGATAGGCACCGCCACCTTT
GATTCTCAGTTTCATATTTGGCTGGGAAGGCCTG-CTGCACACAGGGCGCACGCCGAAATCATCAGACATGGCTGCTATT
TTACTCCTGGGAGAGCTCGTCTTTTTGTTGCGTTCCTCCGCTCCCCGCCACC-----------GACTAGCTCGGTAGCCA
AAGCAAAAGCACCGCAACCTGCCAACGCCGGAGCGGGAGCGGCGGCCGGATTCACGCGCACCAACTCCACCTGCGCGCGC
TCCTCAACACTACTGCCA----CTAAATACTCAATGCCTAGCTAGCTCGGCCGCGCAAGCACGCGCTATAAGAGGCCACG
CCGGTGCGCGGCAACCGGCAGCTCGTTCGATCTTGCCTGCGACTTCGAAGCTGACTGTCACCGTCACTAGTAGTGTATTG
CGTCGATGGCTCTGGGAAGAGGCAGTGCGAGGAACAGCGCCGCGGTCCTCGGCGCGGCGGCGCTGCTGCTCGGCTTGCTC
GCGATGAGCGCCGAGGCGGCCAAGTACACGGTCGGCGACTACGGGGGCTGGAAGTTCAACGTCGCCGGGTGGGCCAAGGG
CAGGACCTTCCGCGCCGGCGACGTGCTCGGTGAGTTGATGTCTGCTTCATTGTTAGCCGCCGCTCGCTAGTTTGTAGGAG
TAATATATGCGTTCGTTCGTGACACGATGCGCTTGTGAGTGTGTG----------------------------TGCAGAG
TTCAAGTACAACGGGGCGGTGCACGACGTGGCGGCCGTGGGCGCGGCGGCGTACCAGAGCTGTGTGGTGCCCAAGGGCAA
AAGGGCGCTGCGCAGCGGGCACGACAAGGTGAGGCTGGTCAAGGGGATGCACTACTTCGTCTGCACCGTGCGCGGGCACT
GCAAGGCCAACATGAAGATCGCTGTCAGGGTCATCTAGGGACCAGA----AGTGGCTAGTGACTTGTTACCA------CA
TTCAGATCAGATCGATCCAAAGCTTTCGACTAAAGCCTTTTAGTTTGCTTAATGCTTAAACCAACTGTTAGTTTGCTTCC
CATTG-----CCGTGCACTCTTGTTCTAGATGCAGCAACCGCGAGTTACAATTCCTGTTAATTTGAATATGGGTCTAAAG
CTTTCTGAAAAC----GATGGACTAGCGCTTTTCCATCCTTTGTTTACACAGGAAAAACCTAACCAGTAAATCTCAAAAA
ATAAAGGAAAAAACCTAACCAGTAAGGAAGAGATAGCAAATCGGGCACTCAGGGGAAGATGACGACACAAGAGGTTCCAT
TTATAGTGAAACTCGTACTAGTGCCATAATATATCGATCGGATATTTGCATACCTTCTCTCCTACTTCAAAAA----TAC
TAAGG-TTTCGTCATAGAGATCCACAAACCTTGCCACGATAAATTTCACAG------CTACCCACTATGCATCGTCATAG
TTATAATAAGTTCTT------------------------------GAAGATCACGTTTCTGTCATGTCAGAG----TAC-
-ACTTCTCTTCG-CCAGGGGTGCGATAA---TCACTCGTCTTTGTCGTCTTTCTT---CGGCTTACGGTATGTTTCCTCA
ATGTGCTTTGCCAGGAAAACATACGTGTTGAACAGCTTCTTGACATTTGGAACGTTGTAGTTCTGAGCTACATAGACACC
ACATCCCACTCCCACCAAAAACTTGAAGCTACCACCGAAAAGCCCCATCGCGAGAAAACCTGGAGACGATGATATAA---
-GG-TTATGTACATGCATCTCGACAGAGGATGT------AAAAAAA-CAT-GGGAAAACAAAAAATGAT--------ACA
AAATGATTGCTGTCATGTAGCAGAAACACACTACCCTT--------TCCAAAC-ATGAAGCCAAATGACACATATTTC--
------------G-CAG--AAGAAAGTAACAGAAGCTACGTTTACTGGCACTGTGTAATAACG-----------------
---------------------------
>chr6A_373
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---------TAAAGTCGGATTGTTTACCCAGAAACCCAAAAAAGGTTATACTAAAAAAATTAAGTTTTTTTACTGGGTAG
CAATAATAACACTTCGCGTCCGCGACA--------------ATACACTTCCGAGATCGATCCAACATACAATGAAACTTC
CCCTTCCCTGCCCTAAAAAAAAC---------ATGCAATGAAACTTCTTTCCAGCGTCAAAGATAGGCACCGCCACCTTT
TATTCTCAGTTTCAGATTTGGACGGGAAGGAAGGCCTGCACGCAGGGCGCACGCCGAAATCATCAGACATGGCTGCTATT
CTACTCCTGGGAGAGCTCGTCTTTTTGTTGCGTTCCTCCGCTCCCCGCCACC-----------GACTAGCTCGGTAGCCA
AAGCAAAAGCACCGCAACCTGCCAACGCCGGAGCGGGAGCGCCGGCCGGATTCACGCGCACCAACTCCACCCGCGCGCTC
TCCTCAACACTACTGCCA----CTAAATACTCAATGCCTAGCTAGCTCGGCCGCGGAAGCACGCGCTATAAGAGGCCACG
CCGGTGCGTGGCAACCGGCAGCTCCTTCGATCTTGTCAGCCAGTTCGAACTTGAGTGTCACTGTCACTAGTAGTGTAGTG
CGTCGATGGCTCTGGGAAGAGGCAGTGCGAGGAACGGTGCCGCCGGCC------------TGCTGCTGCTCGGCCTGCTC
GTGATGAGCGCCGAGGCGGCCAAGTACACGGTGGGCGACTACGGGGGCTGGAAGTTCAACGTCGCCGGGTGGGCCAAGGG
GAGGACCTTCCGCGCCGGCGACGTGCTCGGTGAGCTGATCTCCGCTACT------------GCTCGCTAGCTTCTG----
-----TATGCGTTTGTTCGTGACACGACGCGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGAG
TTCAAGTACAACGGGGCGGTGCACGACGTGGCGGCCGTGGACGCGGCGGCGTACCAGAGCTGCGTGGTGCCCAAGGGCAA
GAGGGCGATGCGCAGCGGGCACGACAAGGTGAGGCTGGTCAAGGGGATGCACTACTTCGTCTGCACCGTGCGCGGGCACT
GCAAGGCCAACATGAAGATCGCCGTCAGGGTCATCTAGAGTGTTTA----------TAGCTACCTGTTTTGTCAACTGCA
TTCAGATCAGGTCGATCCAAAGCTTCCGACTACAGCTTTTTAGTTTGCTTAATGCTTGAACCAACTGCTAGTTTGCTTCC
CAGTTTTTATCCGTGCACTCTTGTTCTAGGTGCGGCAATCGCGAGTTGTAATTCCTGTTAATTTGAATATGGGTCTGAAG
GCTTACTAAAAAACTGGATGGACTAGCGCTTCTCCATCCTTTGTTGACACAGGAAAAACCTAACCAG-------------
------------------------------------CAAATCGGGCACTCACGGGA-------GACACAAGAGGTTCCAT
TTATTATGAAACTTGTACTGGTGCCATGATATATCGATCGGATGTTTGCATACCCTCTCTCCTACTTAAAAAATACGTAC
TAAGG-TTTCATCATAAAGATCCACAAACCTTGCCATGGTAAATTTCACAGCTAGTAGTACCCACTATGCACCGTCGTAC
TTCTAAGC---ACTT------------------------------GAAGATCACATTGCTGTCATGTCAGAA----CAA-
-ACTTCTTTTGGCCCAGGGGCGCGATAA---TCACTCGTCCTTGTCGTCTTTCTT---CGGCTTACGGTATGTTTCCTCA
ATGTGCTTTGCCAGGAAAACATACGTGTTGAACAGCTTCTTGACATTTGGAACGTTGTAGTTCTGAGCTACATAGACACC
ACATCCCACTCCCACCAAAAACTTGAGGCCACCACCAAAAAGCCCCATTGCGAGAAAACCTGGAGATGATGATATAA---
-GG-TTATGAACATGCATTTCGACAGAGGATGT------AAAAAAA-CACGGGGAAACAAAAAAATGAT--------ACA
AAA-----------------------------------------------------------------------------
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>chr5D_1889
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-----------------------------------------------------------------TTAAAAAA----CAC
TAAGG-TTTTATCATAAAGATCCACAAACCTTGCCATGACAAACTTCACAG------CTGGT-----------------G
TTCTCAGC---TCTTGAAAAGATCATAACAAC-TTTAATATTCACGCAGATCATGTTTCTGTAATGTCAGAG----TATA
TACTTCTTTTCG-CCATGGGTATGATAA---TCAGTCGTC------GTCTTTCTTCGGCGGCTTACGGTAAGTTTCCTCA
ACGTGCTTTGCCAGGAAAACATACGTGTTGAACAGCTTCTTGACATTTGGAACGTTGTAGTTCTGAGCTACATAGACACC
ACATCCCACTCCCACTAAAAATTTGAAGCCGCCACCGAAAA---CCATTGCAAGAAAACCTGGAGCCGATGATATAAGGG
GGG-TTATGTACATGCATTTCGACACAGGATGTTTGTAAAAAAAAA-CAT-GGTAAGACGAAAAAAAATGATACAGCAC-
AAATGATTGCTGTCATGTGGCAGAAACACACTACTATA--------TCCAAAC-ACAAAGCTAAATGACACATATTTAGT
ATTGAAGTACTTCCCAGGAAAGAAAGT-ACAGAAGCTACGTTTACAGCCATTGTGTAA----------------------
---------------------------
>chr5B_1889
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-----------------------------------------------------------------TTAAAAAA----CAA
TAAGGTTTTCATCATAAAGATCCACAAACCTTGCCATGACAAACTTCACAG------CTGGT-----------------G
TTCTCAGC---TCTTGAAAAGATCATAACTCCTTTTAACATTCACGAAGATCATGTTTCTGTCAAGTCAGAGTATATATA
TACTTCTTTTCG-CCATGGGCATGATAATAATCAGTCGTC------GTCTTTCTTCGGCGGCTTACGGTACGTTTCCTCA
ACGTGCTTTGCCAGGAAAACATACGTGTTGAACAGCTTCTTGACATTTGGAACGTTGTAGTTCTGAGCCACATAGACGCC
ACATCCCACTCCCACTAAAAATTTGAAGCCGCCACCGAAAA---CCATTGCAAGAAAACCTGGAGCCGATGATATAAGGG
GGG-TTATGTACATGCATTTCCACACAGGATGTTTGTAAAAT-AAA-CAT-GGTAAGACAAAAACCTGGAGT-----AC-
AAATGATTAGTGTCATGTGGCAGAAACACACTACTATATCGGTATATCCAAACAATAAAGCTAAATGACACAT--TTAGT
ACTGAAGTGCTTC-CAGGAAAGAAAGT-ACAGAAGCTACGTTTACTGCCAT-----------------------------
---------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------------S-------
------S--------------------S-S--------------S-----------------------------------
------------------------------------S----------S---------------------------S----
----------------S---------------------S------------S--------------------------S-
-------S------S-------SSSSSS----------------------------------------------------
----S------------------------------------------------S--------------------------
---------SS-----------------------------------------SSSSSSSSSSS----------------S
--------------------------------------S-----------------------------------------
------------------SSSS----------SS---------------S------------------------------
---------------------------------------------S-----------------------------SSS--
-----------------------------------------------------------------S-------------S
-----------------------------------------S--------------------------S-----------
----------------------------------------------------------------------------SS--
S-------S-----------------------------------------------------------------------
--------S--------------------S--------------------------------------------------
----------------------------------------------------------S----------------S----
---------------------------S----------SS-SS---SSSS----------------------SSSS----
-------------S-S----------S------------------------------------------S----------
-S---SS-S-S-S-SS----------------------------------------------------------------
----S---------------------------S-----------------------------------------SS----
-SSSS-------------------------------------------------------S-------------------
----------------------------------S---------------------------------------------
---------------------------------S--------------S-------------------------------
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S--S-------------S--------------------------------------------------------------
---S------S-----------------------------------S----------S--S--S----S-----------
---S-S--------------S---------------------------------------------S-------------
-----------------------------------S---S-----------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_902
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--CTCAACACTACTGCCAGCCA----------------------------------------------------------
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>reverse_2411
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----------GCATGCATTTCGACACAGGA--------------------------------------------------
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