>input_sequence_78880
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-----------------------------------ATGAGCGTGGTAGTCCTGGACGGATCCACGGTGCGGTCCTTCGTG
GCGGACGAGGCGGCCTTCGCGCGCAGCGTGGACGCGCGCTTCGCCGCGCTCGACGCCAACGGCGACGGCGTGCTCTCCCG
CGCCGAGCTCCGCCGCGCGCTCGAGTCCTTCCGCCTCCTTGACGGCGCCGGCTTTGGCTCCGCCGAGCCGGCCCCGCTTC
CCGGCGAGGTGGCCGCGCTCTACGACGCCGTCTTCGAGCAGTTCGACGCCGACCACAGCGGCGCCGTCGACCGCGCCGAG
TTCCGCGGCGAGATGCGCCGCATCATGCTCGCCGTCGCCGACGGCCTCGGCTGCCAGCCGCTGCAGGTCGCCGTGGACGA
CGAGGGCGGCAGCTTCCTGCTCGAGGCCGCGGAGCACGAGGCCGCCATGATTGCCGCCAGGGTCCAGGAAGAACGCGACA
AGGCCGCGGCCGAGGAGGCAGCCGACGGCAAGTGA---------------------------------------------
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>chr5B_1_TraesCS5B01G462600
AGAGGGTCTGAACCTGGGTAAACATCGTGTCCCTAGCCTCCTGTTATCATTAGTCTTAGACGCACAGTTCGGGACCCCCT
ACCCGAGATCCGCCGATTTTGACACCGACAGTCGTCGCGGATGAGGGTGAGGATGCTGCCGCAGCTTTAGAATTTGAGAA
CATAGGTGATCCTTTCAAACTTTCGGATCAGAATCTACATTTAAAGAGTTTATTCAAATGCATCAACAATTTCGGCATCG
AGCAACTTATGAGCATCTAAAGGAAGATCTGATTGAGCATCTGTAAGTGGTTAAAGGGGACAACAATGTTGGAACACAAT
ATTTGAACTTTTTAAAATTTGAACAACTGATGCATGCAGCTATTTGAATGTTTGTTCTTTAGGTATGCAGCTATTTGAAT
GTTTGTACTCTATCTATGTGGGTATTTGAACATACGGACTTTTAAAAAATTAGGGAAGCCAGATGTATGCCGACAGTATT
GGATGACCGTTTCACGCATCCGTGTGCGCGGGCTGGTCCCTGTTCGTGGATGGATGTGAAAGAAAATTCACGGTGGAGAT
GCCATTATACCACGCGTTAACCTTTCCGATAGATCACACAGTGAGACCTTGTTTGAAGCCTGTAATTTTCTTTCCCCTTG
TTTGAGCACTGAGCAATGGATAAGGCACTACTCTCTGCGTCGTTACGGTGTGCGGCGATCACATGGTTT-GCCATTTGCG
AGGCCAAAAAAATTCCAGGCTGAAGGGT------GACTACTGAGTACCTACTGACCAGTGACTACACTACACGTGCTCCT
CACCACGTACACACAGAAT-GAAAATATCCGAAAGCACGACCCCACGACCACATCAAGCAGATAAACATGGCTCCCGGAG
GCCAAACTCAGCACAAAAACCCATCCATCCAC------------------------------------------------
-----------ACTCTCTAGCAGCTCCTCGACA------AAGCCACGACCAGAGCCACCGCGGCCAGCGAGCGAGAGCGA
GAGT--GAGGCGCAGGTGTTCGATCGATCGACGAGATGAGCGTGGTAGTCCTGGACGGATCCACGGTGCGGTCCTTCGTG
GCGGACGAGGCGGCCTTCGCGCGCAGCGTGGACGCGCGCTTCGCCGCGCTCGACGCCAACGGCGACGGCGTGCTCTCCCG
CGCCGAGCTCCGCCGCGCGCTCGAGTCCTTCCGCCTCCTTGACGGCGCCGGCTTTGGCTCCGCCGAGCCGGCCCCGCTTC
CCGGCGAGGTGGCCGCGCTCTACGACGCCGTCTTCGAGCAGTTCGACGCCGACCACAGCGGCGCCGTCGACCGCGCCGAG
TTCCGCGGCGAGATGCGCCGCATCATGCTCGCCGTCGCCGACGGCCTCGGCTGCCAGCCGCTGCAGGTCGCCGTGGACGA
CGAGGGCGGCAGCTTCCTGCTCGAGGCCGCGGAGCACGAGGCCGCCATGATTGCCGCCAGGGTCCAGGAAGAACGCGACA
AGGCCGCGGCCGAGGAGGCAGCCGACGGCAAGTGATGACGGCGCCGACGGCTGCACGGTGTGTA--CGTGTCAAAGGTGG
AG----------------------ACGTGTGAGACGAGTGGTGTGCCGCGTGCGTGTGTCCCGACTCCTTTTAGTGTAAT
GTACCGAATATTTTATGAATAAAATCGTTTCCGATTCTCCTAGGGGCTTTGACATTTGTTTCACTGTTAAACTATGGCTC
GCAGCATGCTCACAAATGTTTACGTCTCTGCTTCTCAAAATTAGCGACCAATCATAAGTTCGACGAATGCATTGCCAATA
GAGTTTAGCTACCGGTAGCAAACCAAGTACTGCTATTTCTTTTCTTGATAAAAAATTGGTATGAAATACCACCAAAATAT
ATATGTCATTTTTTAGTTCAAACACATTAGTACTCCCTCCGTTCATAAATATAAAATATTCTAACCCTTTTCAGAATCGG
ATGTATGTATACATATTTTAATGTGTTTGTTCACTCATTTTAGTCTGTATGGTCCATATTAAAAAATACACAAAACATTT
TATATTTGTTAAT-GGAGTATGTCTTAAGAAGCGTGTGTCAAACTCCCCTGTCTTTCGTCACAAACAAAAAATGTACTCC
CTTCGTTCGAAAATACTAGTTGTAT-------------------------------------------------------
--------------------------------------------------------------------------AAATGG
ATGTATCTAGATGCATTTTTGTTTTAGATACATCCATTTCTATTCATTTTTGTGACAAGTAATTTGGAATGGAGGGAGTA
TATTTAATGTTGCTAGATAGTAGATATTCTAGGCTCGATTAGTCACAAAATAATGAAGATATTTGTATTACTATATTTAT
AAGAAAATCTTTCCACCTTTCTCTATCTCGAAGCACTTCTTCACTACCAGAGCTTCCATGTGCTTGTTCGGTCTATGGCT
CGAGTGAAGTATTTTAAAATTCTTTGCGCTTTTGAAATTCAAATTTGAAATTAGGTTTACGTGATTTTGAAACCCTTCAT
ACATTTAATTATATTCCTTCGACCTCCAGAAAATTCACAAACTATATCTTGATTGCACAGATAAGAGTA
>chr5D_565
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----TTATACCACGGATGAACCTTTCCGATAGATCATAC--TGAGGCCTTGTTTGAAGCCTGTAATTTTCGTTCCCCTTG
TTTGTACACCGAGCAATGGATAATGCA-----CTCTGCGTCGTCACGGTGTGCGGCGATCATATGAC-AAGCCATTTGCG
AGGCAAAAACAATTCAAGGCTCAAGGGT------GACTACTGAGCACCCACTGACCATTGACTACAATACACGTGCTCCT
CACCACGTACACACACAAG-GAAAATATCCGAAAGCACGACCCCACGACCACATCAAGCAGATAAACATGGCTCCCAGAG
GCCAAACTCAACACAAAAACCCATCCATCCACTGACCCACGGCAAAACCAAATCCGCTGTCGGAAGCC-----TCCACTC
CACTCCACTCCACTCTCTAGCAGCTCCTCAACATTCAACAAGCCACGAGCAGAGCCACCGCGGCCAGCGAGCGC------
GAGT--GAGGCGCCGGCGTTCGATCGA----CGAGATGAGCGTGGTGGTCCTGGACGGGTCGACGGTGCGGTCCTTCGTG
GCCGACGAGGCGGCCTTCGCGCGCAGCGTGGATGCGCGCTTCGCCGCGCTCGACGCCAACGGCGACGGCGTGCTCTCCCG
CGCCGAGCTCCGCCGCGCGCTCGAGTCCTTCCGCCTCCTCGACGGCGCGGGCTTCGGCTCCGCCGAGCCGGCCCCGCTCC
CGGGCGAGGTCGCGGCCCTCTACGACGCCGTGTTCGAGCAGTTCGACGCTGACCACAGCGGCGCCGTGGACCGCGCCGAG
TTCCGCGGCGAGATGCGCCGCATCATGCTCGCCGTCGCCGACGGCCTCGGCTGCCAGCCGCTCCAGGTCGCCGTGGACGA
CAAGGGCGGCAGCTTCCTGCTCGAGGCCGCGGAGCACGAGGCCGCCATGATCGCCGCCAGGGTCCAGGAAGAACGCGACA
AGACCGCGGCCGAGGAGGCAGCCGACGGCAAGTGATGACGGCGCCGACGGCTCCACGGTGTGTA--CGTGTCAAGGTGGT
GACGTGGAGTGGCGCGTGGCGTGTACGTGTGAGACGAGTAGTGTGCCGCGTGCGTTTGTCCTGACTCC--TTAGTGTAAT
GTACCGAGTATATTATGAAAAAAATCGTTTCAGATTCTCCTAGGGGCTTA-ACATTTGATTCACTGTTAAACTATGGCTC
CCAGCATGCTCACAAATGTTTACGCCTCTGCTTCTCAAAATTAGCGACCAATCATAAGTTCAACGAATTCATTGCCAATA
G--TTTGGCTACAGGTAGCAAACCAAGTACCGCTATTT------------------------------------------
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>chr5A_636
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---------------------------------------------------------------------------CCTTG
TTTGAAGCCT--GCAATGGATAAGGCA---CTCTCTGCGTCGTTACGGTGTGCGGCGATCACATGGCTAAGCCATTTGCG
AGGCAAGAAAAATTCCAGGCTGAAGAGTGACAATGACTACTGAGTACCTACTGACCATTGACTACACTACACGTGCT-CT
CAGCACGCACACGGAGAAGCGAAAATATCCCAAAGCATGACCCGACGACCACATCAAGCAGATAAACGTGGCTCCCAGAG
GCCAAACTCAACACAAAAAT----------------------------CAAATCCGCTGTCGGAAGTCTCCATTCCACTC
CACTCCACTCCACCCTCCAGCAGATCCTCAACA-------AGCCACGACCAGAGCTGCCGCGGCGAGCGAGAGC------
GAGAGCGAGGGGCCGGCGTTCGACCGA-CGACGAGATGAGCGTGGTGGTCCTGGACGGGTCGACGGTGCGGTCCTTCGTG
GCGGACGAGGCGGCCTTCGCGCGCAGCGTGGACGCGCGCTTCGCCGCGCTCGACGCCAACGGCGACGGCGTGCTCTCCCG
CGCCGAGCTCCGCCGCGCGCTCGAGTCCTTCCGCCTCCTCGACGGCGCGGGCTTCGGCTCCGCCGAGCCGGCCCCGCTCC
CCTCCGAGGTGGCCGCCTTCTACGACGCCGTCTTCGAGCAGTTCGACGCCGACCACAGCGGCGCCGTCGACCGCGCCGAG
TTCCGCGGCGAGATGCGCCGCATCATGCTCGCCGTCGCCGACGGCCTCGGCTGCCAGCCGCTCCAGGTCGCCGTGGACGA
CGAGGGCGGCAGCTTCCTGCTCGAGGCCGCGGACCACGAGGCCGCCATGATCGCCGCCAGGGTCCAGGAAGAACGCGACA
AGGCCGCGGCCGAGGAGGCAGCCGACGGCAAGTAATGACGGCGCCGACGGCTCCACGGTGTGTATACGTGTCAAGGTGGA
GACGTGGAG-----------------------------------------------------------------------
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>chr5D_1768
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--------------------------GTACCGCTATTT-TTTTCTTGATAAAAAATTGGTATGAAATACCACCAAAATAT
ATATGTCATGTTTTAGTTAAAACACATTAGTACTCCCTCCGTTCACAAATATAAGATATTCTAACTTCTTTCAAAATCGG
ATGTATTTAGGCATGTTTTAATGTGCTTGTTCACTCATTTCAATCTGTATGATCCATACT-AAAAATATGCAAAACATCT
TGTATTTGTGAATTGGAGTATGTCTTAAGAAGCGTCTGTCAAACTCCCCTGTCTTTCGTCATAAACAAAAAATGTACTCC
CTCCGTTCGGAAATACCAGTTATACAAATGGATGTATCTAGATGCATTTTATTTTTAGATACAAAGTATGTCTTAAGAAG
CGTGTGTCAAACTCCCCTGTCTTTCGTCACAAACAAAAAAATGTACTCCCTCCATTCGGAAATACCAGTTATACAAATGG
ATGTATCTAGATGCATTTTAGTTTTAGATACAACCATTTCTATTCATTTCTGCGACAACTAATTCGGAATGGA-GGAGTA
TATTTAATGTTGCTAGGTAGTAGATATTCTAGGTTCGATTAGTCACAAAATAATGAAGATATTTGTATTACTATATTTAT
AAG-AAATCTTTCCACTTTTCTCTATCTGGAAGTACTTTTTCACTACCAGAGCTTCCATGTGCTTGTTCGGTCTATGGCT
CGAGTGAAGTATTTTAAAATTATTTGCTCTTCTAAAATTGAAAATTGAAATTAGGTTTAGGTGATTTTGAAACCCTTCAT
ACATTTAATTATATTCCTTCAACCTCCATAAAAC-CACAAACCATATATT--TTGCACAAATATGAGTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------SS-S------------------S--SS----S------------------------S---------
-----S---------------------SSS------------------------------------S-S-----------
----S----------------------------------------------------S----------------------
------------------S---------------------------------------------------------S---
----------S---------------------------------------------------------------------
-----------------------------S-------------------------------------------SSSSSSS
-------------S--S----------S------------------S-----------S--S------------------
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---------------------------------------S--------S-----S-----------------------S-
----------------S---------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------------------------------------------------S----------------------------
----------------------------------------------------S---------------------S-SS-S
SS-------------------------------------S---------------S-----S------SS----------
-------S---S-------S-----------S-----------------SS-------S---------------------
S-----------------------S------------------------------------S------S-----------
-SS---S-----S-----------------S-------S-----------------------------------------
---------S--------S--------------------------S--------S----------SSS-----S------
------S--SS---S----------S--------------S-S--------S------S-S-------SS--------S-
-S-------S-------------------------S-------------------------S------------------
--S------S------S----S--S-------------------------------------------------------
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-------------------S------------S----------------S--S-----S-----S--------S------
----------------S----------------S----------------------------------------------
---S------------S-----------S----S----S-----------------------------------------
---------------------S-----S---S-S-----S---S---------------S--------------------
--------------------S-------S----SS-------S----S--SS-------S---S-----
>forward_75
-------------------------------------------------------TTAGACGCACAGTTCGGGAC-----
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>reverse_1595
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--------------------------------------------------------------------------AGGTGG
AGACGTGTGAGACG------------------------------------------------------------------
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