>input_sequence_78855
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-----------------------------ATGTCGAGCTCTGAGATGGAGGACTCTTCGCTGAGCAGCGACATCAGGTTC
TACGCGTACGCGGTTCTCGCGTCGTTCGGCGTGGCCGCCGTCCTCGTGGTGTGCTTCTGGCAGCTGTACAAACTCACCGT
GTCCGCGCGCCCGCAGGACATGCTGCCCGTCTCTTCCTCCTCTGGTAATGTGGCAGCGCTGAGGCTGAGGGACATCTTGG
CGCTCCCCGTGTTCGTGCACGGCGGCAATGGCGATGGCGCTCCTGTGGGCGTGGAGTGCGCGGTGTGCCTCGCGGAGATG
ACGGATGGCGAGAGGGGCCGGCTCTTGCCGCGGTGCGGACACCGGTTCCACGTCGAGTGCATCGACCGGTGGTTCCGGTC
CAACTCCACATGCCCGCTCTGCCGCGTCGCGGTCTTCGGTGAGCCGAGCACGCTGGAGGCGCACAAGGGTGCCTCCTTGT
CTGTGCCCGTGGTTGTGTTGCAAGGTTAA---------------------------------------------------
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>chr4B_1_TraesCS4B01G167400
CGATCAACATTAACGTAAACGATCTTGATGACTCAATTCAAGTCTTTTATGCTCTAGAGCTGCAAATGTGAGGGTCACTG
TGGCAACATGACTTGGTCTTTCTAATGGTTAGGAATGCACTAAATTTGCAACCAGTTAATCCAGACCGCTGGTTCAAACC
AAGGGGAAAAACTTCACAAAGAGAAGAATGATCAAGTACCCGGCTAGCATAGT---------------------------
----------------------------------CCTGCCTGGCTGCATGATTGCCTTGCGATCCACAAAGTTGTTGGAT
CCCGCACGAGAGCACAATAAGTCTTTTGTATTAATTTTTGAAACTTACAATTTTACATCTAAATGCCGGTCCTTCATAT-
-AGTTTCAGTGCTGAAAACTTTAACCATACGTTTTTGTCGGTCACGGATACTAAAACTTGTGATTTTGTTGGTCGCTCGT
ACTAAATTTTAAAAGTTAAAAGTTAACAAATTTTTAGAAACTCATCAAAACGTATTACAAATGGATCTTATTTGAAGGCT
CTCATCATGAGAAACGCGAATATGAAAATAAAACTTAATTTAAACTCTCTTTCTTTAAAACAAAACATATGAAAAATTGA
AAACCAAAAGTCAAAAGAGAAAGCACACGCGAAGGGATGGGTGTCCCCACACGTGCGTGCCACAAATTCTCTCCCCAGAA
GTTCAACGATGTGTACTCATATGTCATAGAAGAACTCGAGGTCGCACTTGCTC--------------------AACGTGG
ACGACAAGCCGCCTACCTACATGATCGAGCCTAGACTTGTTCTTTTCATGCTTGCATACATTTGCTTCGCGTTGCATAAC
CGCAGCATGTGCCGAATATGCGTGG--------------A--------------GTCGCGTAGCCCGAACCCAAGATAAC
ATATTCTAGGACAATT-----------------------------------GAGCACGGGCAGTTAGGGGCAAAATGTCA
TCTTATATATCATGCACCATCGCACATCGTCGAGCAGACACAAACACATA---CTTCCCATTGCTCCTTGCTCCAAATAA
CCACGCACTGTACGTATAGAGAGGCCGACATGTCGAGCTCTGAGATGGAGGACTCTTCGCTGAGCAGCGACATCAGGTTC
TACGCGTACGCGGTTCTCGCGTCGTTCGGCGTGGCCGCCGTCCTCGTGGTGTGCTTCTGGCAGCTGTACAAACTCACCGT
GTCCGCGCGCCCGCAGGACATGCTGCCCGTCTCTTCCTCCTCTGGTAATGTGGCAGCGCTGAGGCTGAGGGACATCTTGG
CGCTCCCCGTGTTCGTGCACGGCGGCAATGGCGATGGCGCTCCTGTGGGCGTGGAGTGCGCGGTGTGCCTCGCGGAGATG
ACGGATGGCGAGAGGGGCCGGCTCTTGCCGCGGTGCGGACACCGGTTCCACGTCGAGTGCATCGACCGGTGGTTCCGGTC
CAACTCCACATGCCCGCTCTGCCGCGTCGCGGTCTTCGGTGAGCCGAGCACGCTGGAGGCGCACAAGGGTGCCTCCTTGT
CTGTGCCCGTGGTTGTGTTGCAAGGTTAAGCGCGTGCTTGTGTTCTCAAACCCTTTTTTCTCTCCTTCTATGATTGTCTG
TGCTGTTCATGGAACTGTTCGTTTTGTTCAATTTGTAAAAGGAAATGTCATATTCTGTCCCAAAGACATATTGTATTTAG
CTCACGCTCTTTTACACTCTTTTACTCCCTCCGTTCGAAATTACTTGTCGCCGAAATCGATAAAAATAAATATATCTAGA
ACTAAAATATATTTAGATACATGCATTTCTTCGACAAGTATTTCCGGACGGAGGAGTATTTATGTTGGGATGTTGTAGTC
TCATCATGTACTCAAGTATCCATCTCATGCCTCCCTCAGAACTCTCTCGTCCCCTCCAGTGACGAGTAAACCCAGGGCGA
GGCTTGCAATCTGGTGGTCACGATCCTATCGTGCATCCATCCTAGTGTGC-TTTCAAAGAAAGACTCGGTCTCCTCAACA
CCAGGACCAACTCCCGTACCCCCAGTTCTCACTATTTGGCTGCAGGTAGGGGTGATTTGGGGAAAAT-TCTTGTTTGCTT
TCCACCCGTGGCTGTGCGTCAGATCTCGGAAATATGAGGGTGTGAATGGCTGATTTGAGGAGCGGCGAAGTGGAGGCGGA
GATGCAGCCTCGCGCCAACACGGATTTGACAATGGAGATGGTGGATTCCAAGGGGAAAGCCGCAGGAAAGCTGGTCGGCG
AACCCGCGGATGCAGAGGGCCAGGTCAGGGAGATGATGGAGCGTCTCAATCTCACTTCGGCAGAGGCGGATGCCCTCATC
TTGGAATATGAGAATGAAGCTGATTTGGTGAATCTGGAATTTGCCTTAATTGGTAAGGTATTATCCCCACATGCTCTACA
TATACAGACTATCATGTCGGCGCTTAGACCAGCTTGGGCGAATCCAAAAGGTTTAGTTGCAAAACCAGTGTCAAACAATA
TTTTCATTGTTGAGTTTGCAACTAAATCAGACAAAGAAAGAGTGAAAGATGGTGCTCCATGGACAGTGGGG
>chr4D_9
ATTAC---------ATAAACGATCTTGATGGCTCAATTCAAGTCATTTATGCTCTAGAGCTGCAAATGTGAGGGTCACTG
TGGCAACATGACTTGGTCTTGTTAATGGTTAGGCATGCACTAAATTCGCAATCAGTTAATCTAGACCGCTGGTTCAAACC
AAGGGGAAAAACTTCACCAAAAGAAGAATGATCAAGTACCCGGCTAGCATAATAAATGAGAAGTTCACGAAATTTTGCAG
GGGCACGCAGGTTCGGTAGCACGCACCTGCCAGCTCTACCCGGCTGATCAATTGCCTCGTGATCCGCAAAGTGGTTGGAT
CCCGCATGAGGGCACAATAACTTTTTAGTTTTAATTTTTGAAACTTACGATTTTGTATCTGAATGTTGGCCGTTCATATC
AAGTTTCAGTGCTGAAAT-TTTAAGCATACATTTTTGTTGTTCACATGTACTGAAACTTGTGATTTTGTCGGTCGCTTGT
ACTAAGTTTCAAAACTTGAAAAAAAAATCAA------AAACTTGTCAGAACGTATTACAAATGGATCTTATTTGAAAGCT
CTCATCACAAGAAACATGAATATGAAAATAAGACTTAATTCAAGCTCTTTTTCTTCAAAAGT-----TATCAAAGATTGG
AAACCAAAAGTCAAAAAAGAAAGCACGCGCGAGGGGCTGGGTGCAAGG----------------AATCCTCT-CCGAGAA
GTTCAGGGATGTGTACTCCTATGTCATAGAAGAACTCGAGGTCCCACTTGCTCCTTCTTTTGTGGCAAACCAGAACGTGG
ACGACAAGCCGCCTACCTACATGATCGAGCCTAGACTTGTTCTTTTCATGCTTGCATACATTTGCTTCGCGTCGCATAAC
CGCAGCATGCGCCGAATATGCGTGG--------------AGCGGTGTACACATAGTCGCGTAGCCCCAACCCAAGATAAC
ATATTCTAGGACAAATTCTCAAAGAACAAAAGACATATTCTAGGACAATGAGAGCACGGGCAGCTAGGGGCAAAATGCCA
TCATATATATCATGCACAATCGCACATCGTCGAGCAGACACAAACACATAGCACTTCCCATTGCTCCTTGCTCCAAATAA
CCACGCACTGTACATATAGACACGCCGACATGTCGAGCTCCGAGATGGAGGACTCCTCGCTGAGCAGCGACATCAGGTTC
TATTCGTACGCGGTTCTCGCGTCGTTCGGCGTGGCGGCCGTCCTCGTGGTGTGCTTCTGGCAGCTGTACAAACTCACCGT
GTCCGCGCGCCCGCAGGACATGCTGCCCGTCTCTTCCTCCTCCGGCAATGCGGCGGCGCTGAGGCTGGGGGACGTCTCGG
CGCTCCCCGTGTTCGTGCACGGTGGCAATGGCGACGGCGCCCCTGTGGGCGTGGAGTGCGCGGTGTGCCTCGCGGAGATG
ACGGATGGCGAGAGGGGCCGGCTCTTGCCGCGGTGCGGACACCGATTCCACGTCGAGTGCATCGATCGGTGGTTCCGGTC
CAACTCCACATGCCCGCTCTGCCGCGTCGCGGTCTTCGGCGAGCCGAGCACGCTGGAGGCTCAAAAGGGTGCCTCCTTGT
CTGTGCCCGTGGTTGTGTTGCAAGGTTGAGCGCGTGCTTGTGTTCTCAATCCTTTTTTTCTCTCCTTTTATGATTGTCTG
TGCTGTTCATGGAACTGTTCGTTTTGTTCAATTTGTATAAGGAAATGTCATATTCTGTCCCAAAGACA-----TATTTAG
CTCACGCTCTTTTACACTCTTTTA--------------------------------------------------------
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>chr4A_9
ATTAC---------GTAAACGACCTTGATGGCTCAATTCAAGTCTTTTATGCTCTAGACCTGCAAATGCGAGGGCCACTG
TGGCAACATGACTTGATCTTGCTAATGGTTAGGCATGCAATAAATTTGCAATCAGTTATTCTAGACCGCTGGTTCAAACC
AAGGGGAAAAACTTCACCAAGAGAAGAATGATCAAGTACCCGGCCAGCATAATAAATGAGAAGTTCACGAAAATTTGCAG
GGGCACGCAGGTTCGGTAGCACGCACCTACCAGCCCTACCCGGCCGACCGATTGCCTTGCGATCTGTAAAGTGGTTGGAT
CTCGCATGAGGGCACAATAACTTTTTAGTTTTAATTTTTGAAACTTACGATTTTGCATCTGAATGTCGGCCGTTGATATC
AAGTTTCGGTGCTCAAAC-TTTACACATAGATTTTTGTTGTTCACGGGTACTGAAACTTGTGATTTTGTCATACGCTCGT
ACTAAGTTTGAAAAGTTGAAACTTTTTTTT-------AAACTCATCAGAACGTATTACAAATGGATCTTATTTGAAAGCT
CTCATCACAAGAAACACGAATATGAAAATAAGACTTAATTCAAGCTCTTTTTCTTCAAAAGT-----TATGAAAGATTGA
AAATCAAAAGTCAAAAAAGAAAGCACGCGCAAGGGGCCGCACCTGC------------GCAACAAATCCTCT-CCGAGAA
GTTCAGGGATGTGTACTCCTATGTCATAGAAGAAGTCGAGGTCCCACTTGCTCCTTCTTTTGTGGCAAACCAGAACATGG
ACGACAAGCCGCCTACCTACATGATCGAGCATAGACTTGTTCTTTTCATGCTTGCATACATTTGCTTCGCGTCGCATAAC
CGCAGCATGTGCCGAATATGCGTAGAGCGGTGTACACATA--------------GTCGCGTAGGCCCAACCCAAGATAAC
ATATTCTAGGACAAATTCTCAAAGAACAAAAAACATATTCTAGGACAATGAGAGCACGGGCAGTTAGGGGCAAAATGCCA
TCTTATATATCATGCACAATCGCACATCGTCGAGCAGACACAAACGCATACTACTTCCCGTTGCTCGTTGCT--------
CCACGCAGTGTACGTATAGATAGGCCCACATGTCGAGCTCTGAGATGGAGGACTCCTCGCTGAGCAGCGACATCAGGTTC
TACGCGTACGCGGTTCTCGCGTCGTTCGGCGTGGCGGCGGTCCTCGTGGTGTGCTTCTGGCAGCTGTACAAACTCACCGT
GTCCGCGCGGCCGCAGGACATGCTGCCCGTCTCTTCCTCCCGCGGTAATGTGGCGGCGCTGAGGCTGAGGGACATCTCGG
CGCTCCCCGTGTTCGTGTACGGCGGCAATGGCGACGGCGCCCCTGTGGGCGTGGAGTGCGCGGTGTGCCTCGCGGAGATG
ACGGATGGCGAGAGGGGCCGGCTCTTGCCACGGTGCGGACACCGGTTCCACGTCGAGTGCATCGACCGGTGGTTCCGGTC
CAACTCCTCATGCCCGCTCTGCCGCGTCGCCGTCTTCGGCGAGCCGAGCACGCTGGAGGCGCACAAGGGTGCCTCCTTGT
CTGTGCCCGCGGTTGTGTTGCAAGGTTGAGCGCGTGCTTGTGTTCTCAATCTCTTTTTTCTCTCGTTTTATGATTATCTG
TGCTGTTCATGGAACTGTTCGTTTTGTTCAATTAATAAAAGAAAATGTC-------------------------------
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>chr5B_1792
CAACTC--------------------------------------------------------------------------
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---------------------------TGCCTCCCTTAGAACTCTCTCGTCCCTTCCAGTGACGAGCGAAACCAAGGCGA
GGCTTGCAATCTGGTGGTCACGATCCCATCGTGCATCCATCCTAGTGTGC-TTCCAAAGCAAGATTCA-TCTCCTCAACA
GT---------TCCCGTACCCCCAGTTCTCA-GATTTGGCTACAGGAAGGGGTGATTTGGGGGCAGAATCTTGTTTGCTT
CCCACCCGTGGCTGTGCGTCAGATCTCTGAAATCTGAGGGTGTGAAGGGCGGATTTGAGGAGCGGCGAAGTGGAGGCGGG
GATGCAGACTCGCGCCAACACTGATTTGACAATGGAGAAGGTGGATTTCAAGGGGAAGACCGCGGGAAAGCTGGTCGGCG
AACCCGCAGATGCAGAGGGCAAGATCAGGGAGATGATGGAGCGTCTCAATCTCACTTCGGCAGAGGCGGACGCCCTCATC
TTGGAGGATGAGAATGAAGCTGATTTGGTGAATCTCGAATTTGCCTTAATTGGTAAGGTATTATCCCCACATACTCTGCA
TATACAGACTATCATGTCGGCACTTAGACCAGCTTGGGGGAATCCAAAAGGTCTGGATGCAAAACCAGTGTCAAACAATA
TTTTCATTGTTGAGTTTGCAACTAAATCAGACAAAGAAAGAGTGAAAGATGGTGCTCCATGGACAGTGGGG
>chr5B_1799
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---------------------------TGCCTCCCGTAGAACTTTCTCGTCCTTCCCAACGATGGGCAACTCTAGGGTTA
GGCTTTCAATCTGGTGGTCACGATCCTATCGTGCATCCATCCCAGCTTGTTTTCCAACGCAAAATCTCATCTGCCCCGCA
CCAAGACCTTCTCTCAAACACCCAGTT-TCAGGATTTGGCTGCAGCTCGGGGAGATTTTGGGGCAATATTGGTGTTGCTG
CCCACCCTTGGCTGTGCGTCAGAATACTGAATAGGGCCGC-GTGACTGGCGGATTTGAGCGGTGGCGGAGTGGAGGCAGT
GATGGTGACTGGTGCCGAGGCTTATTTGGCAGTGGCGACGGCGGATTCGACGGAGAAGTCGGCCGGTTGGCAAGCCGGCG
AACCAACTGATGCAGAGGACAAGGTTGCAGAGATGTTCGAGCGTCTCAATCTCACTCCAGCAGAGGCGGACGCCCTTATC
CTGAAGGATGAGAATGAAGCAAATTTAGTAAATTTGGAATTTGCTCTAATTGGCAGGGTATTATCCCCAAACATTCTTCA
TATACAGACTATTATGTCGGCATTAAGGCCAGCTTGGGGAAACCCCAAAGGATTGGTTGCGAAACCTGTGGCAGATAATA
TTTTCATAGCAGAGTTTGCAACCAAATCAGACAAAGAGAGGGTAATAGATGGTGCTCCATGGACTGTTGGG
>SNPs
-S-S-SSSSSSSSS----------------S-------------------------------------------------
--------------------S------------S-----------------S---------S------------------
-----------------S---------------------------------S----------------------------
-------------------------------------S--S-----SSS----------------S------S-------
------S---S---------S-S---S--S------------------S-----S-----S----S---S-S--------
-----------------SS-----S-----S-------S-S------S----S----------------S----------
-----S---S-------S---S----SSS-SSSSSSS----------S----------------------------S---
-------SS------S---------------S--------S--S----S------S----SSSSSSS-------S-----
----------------S---------S-----S---S-------S-SSSSSSSSSSSS--S------S----S--S----
-----SS-----------S------------------------S------------------------------------
------------------------------------------------------------------------S-------
------------------------------------------------------------------S-------------
--------------S--------------------------------------------------------------S--
-----------------S--------------------------------------------------------------
--------------------S----------------------------------S------------------------
-----------------------------------S--------------------------------------------
------------------------------------------S-----------S----------------------S--
----------------------------------S-----S---------------------------------------
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---------------------------------------S----------------------------------------
---------------------------S---------------------S-----------------S------------
--------------------------------------------------------------------SSSSS-------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------------S------------S---S---------
-----------------------------------------------------S-----S----S--SS-----------
---S----SS---------------------SS-----------------------------SS----------------
S--------------------------S-----S----------------S----------------------------S
-------S-------------S----------------S------------------SS----S----------------
-------S------------S-------------------------------------------------S---------
-----SS-----------------------------------------------------------------S----S--
---------------------S----------------S---------------S-------------------------
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>forward_448
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----------------------------ACGTTTTTGTCGGTCACGGA--------------------------------
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>reverse_1939
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------------------TCCATCTCATGCCTCCCTCA------------------------------------------
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