>input_sequence_78852
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-----------------------------------------------------------------------------ATG
GCTACCATCAGCGCCGCCGCGGCGACCACCGTCGTCGCCCGTGCCGCCATCGCCAGGCCGCAGGCCCTAGGTACGTAGCC
GCTACGTGCCACTGAGCGTGTGTGTGTTCCATGTGCA---------GCCCAAGCATGAGCTGACAT--GCCGATTAACCG
TGCAGGTCTGCCCCAGCTGAGGACGAGGAGCGAGAGGGTGAGGTGCAGCTACTCCAAGGACGCCAAGGAGGCGACCCCGG
CGGCCGCCGTCCGCGGGGCCGGCGCGTCCCTGCTCGCCGCGGCGGGCGCGGTGACCGCGTCCGCGGGGCCGGCGCTCGCT
CTGGTCGACGAGCGGATGTCGACGGAGGGCACCGGGCTCAGCCTGGGGCTGAGCAACAACCTGCTGGGGTGGATCCTCCT
GGGCGTCTTCGGCCTCATCTGGTCGCTCTACACCGTCTACACCTCCGGCCTCGACGAGGACGAGGAGTCCGGCGGCCTCT
CGCTCTAA------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G309400
TTGCTAGCGGGCCTTGATGCTTGGGAGACTCACCAAAGCCATCCTTTGTGTTTGACGATGTACCTCGTGGCATGGCCGCC
GATTTGGTTAAATTCATTTGTCTAATGGAATGCAATGTGTTCCCGTTAAAAAGACAGATATAAACGAGTTTAGTGACCCA
AATATATTAGGAGTTTAGCTGGGTGGCTGAGTTAAACAAGTTTAGTAAATTAGGATGTGGGGGTCGTTTCGTTTGATTCC
TAGCCATACTTTGTCGCATATTGAATAGGTGTTTGGTTCAAGTCACATATTAGATAAGATTCTTTTTGTG-AAAAATAAA
CCCGGCATGCCATATGCACAAAAACGTGAGAATATTTTCTTAGGCAATCCGTAGTGTGGCCAAGAGTTTGTGAACCTAAA
GTTAGACATGATTAGCAAAATTTGAGTGGCAAACTATGTCAAAATTAGC--CTCAAACCAAACAGGCCCGTAATTTAAGA
GTTCAATGACCGTCTAAAAGAAGTTGAGCAAGTTGGGTAGCCCATAAGCTAAGTGTAATTTAT-----------------
------ATGCACATACTGTATATGTAAGTTTTATATAATACATCGAAATGAAACAAGTGGGGCCAAAACTTCCCATAGCC
GGGCTAGAGAATTAGCATCGGGACAACAAGCGATTAATTAATCAATATGGCAAAAATTCCTACAACATGCGATTTCTCCT
CTCGAAATACCAGTACCACTCAGCTAAACTAGAGTCGCTGTGCAGGCGTCCACTTATTTTCATCGGAGAATCTGCTGGTC
CACGCGGCAAGCTCTGATTGGCCACGACAGGATAGCCAATCTCCCGCCTCACCCAATCCTGGTGGTGCCAAGCGATCCGC
GGCCTCGCTTATTGTC--------GATATTTTCACACATCGCCTTATTAAGGAAACACCCTGCGGACCAGCACACGCTAG
CCAAGCAAGACCCGAGCAAGCCACACTCTCCAGCACCAGCAG--GCCGGCGGCAAGCAGCGCAAGCACAGCAG-CAAATG
GCTACCATCAGCGCCGCCGCGGCGACCACCGTCGTCGCCCGTGCCGCCATCGCCAGGCCGCAGGCCCTAGGTACGTAGCC
GCTACGTGCCACTGAGCGTGTGTGTGTTCCATGTGCA---------GCCCAAGCATGAGCTGACAT--GCCGATTAACCG
TGCAGGTCTGCCCCAGCTGAGGACGAGGAGCGAGAGGGTGAGGTGCAGCTACTCCAAGGACGCCAAGGAGGCGACCCCGG
CGGCCGCCGTCCGCGGGGCCGGCGCGTCCCTGCTCGCCGCGGCGGGCGCGGTGACCGCGTCCGCGGGGCCGGCGCTCGCT
CTGGTCGACGAGCGGATGTCGACGGAGGGCACCGGGCTCAGCCTGGGGCTGAGCAACAACCTGCTGGGGTGGATCCTCCT
GGGCGTCTTCGGCCTCATCTGGTCGCTCTACACCGTCTACACCTCCGGCCTCGACGAGGACGAGGAGTCCGGCGGCCTCT
CGCTCTAAGC----CATAGTCTTCT-CGTCGTCTCATGTAATCCGCTCGCGAGCATCGCCATGATCGGTGTAATGTAATT
CCAGAGATGGATATTTGTATCTAAGCGTTTCCATTCTGAGAGATGTTTCGCCGTCAGATGGTTTGCATGCCCC-CCTTGG
AGACTCTCCGTCTCGCGACTTGGATGAATAA----AACATCCAAGGGAAATTTCACGCACGCACAGATAGGCCCGAGTTC
TCAGTAAAATTGCTGATCTGTGATGGTATGTGCCATTTTGGCCATATGGGTCCTTTGCTTCTAGTGTACATAACTTTACA
TCAGCTATTTGATCAGAACCATATAACTGAACATATATCGGATCACTGCAACAGAATATAC-CTTTTTGATCTACAACAA
AATCTGTTAACGAATGTTGATTCTCAAGGTGCTCCAAGTTAGGTGGAAGAACTGGTGCCTACTCTAATGGTCAGCTGGTA
CTATCTTCAATATGATCGTCCTGAGATGCAATCTCTTCAGCAGTAACTTCTATCTGTTCAGAGATGCTTAAGGTGTCTTC
GGAAAAAAATTCAGTGTTTCCTTCGGACGAGCCACCAGTAGCATCAGTAACTTCTATTGGCTCAGAATCGCCTGTTACCA
CAATATTTTCAAGGTGTTGAGCTCTTGAACTGGTTTTCAAAGGCTCGTCAGGAGGGCTTGTGGCTGGATGAGAGATCAAT
ATTACAGAACTTGATTGAATCTGGACACTGGATTGGTCCGCATAAGATTCATCGGGGTGCTCATGACTTCTAGAATTCTG
CGTGTTATCCTGTTCGTCATGGTATGATATGCCAAGTTTCTGTGCATGACTCAATCCTGGACAAACTCCCTAGCAAAAAG
AAATATTGCAGTCAGCGAAGAAAAACGCACCTTCAACTTCAAACCAACATGTATACTAGATCGAAGTGACAAAAGATCTT
AAAAGATCCGCTTGGTAAGTGTGGTATTCCTGTAGAATAGCACAAGTACCATAATAAAC
>chr3A_257
CAAATTGAACGGA-------------------------------------------------------------------
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-----------------------------TGTTTGGTTCAAGCCACACCGTAGACAAGATTCCTTTTGTGAAAAAATAAA
CTCGGCATGCCGTACGCACAAAAATGTGACAATATTTTCTTAGGCAATCTGAAGTGTTGCTAAGAGTTTGTGAACCTAAA
GTTAGACAAGTTTAGCAAAATTTGAGTGGCAAACTATGACAAAATTAGC--C--AAACCAAACAGGCCCGTAGTTTAAGA
GTTCAATGACCGTCTAAAAGAAGTTGAGCAAGTTGGGTAGCCCATAAGCTGT--------------------ATTATGGC
ATGCATAGGAAAATACTGTGTATGTAGGTTTTATATAATAGGTCGAAATGAAACAAGTGGGGCCAAAACTTCCCATAGCC
GGGCTAGAGAATTAGCATCGGGACAGCATGCGATTAATTAATCAATATGGCAAAAATTCCTACAACATGCGATTTCTCCT
CTCGAAATACCAGTACCACTCAGCCAAACTAGAGTCGCTGTGCAGACGTCCACTTATTTCCACCGGAGAATCTGCGGGTC
CACGCGGCAAGCTCTGATTGGCCACGACAGGATAGCCAATCTCCCGCCTCACCCAATCCTGGTGGTGCCAAGCGATCCGC
GGCCCCGCTTATTGTC--------GATATTTTCACACGTCGCCTTATTAAGGATACACCGTGCGGACCAGCACACGCTAG
CCAAGCAAGACCCGAGCAAGCCACACTCTCCAGCACCAGCAG--GCCGGCGGCAAGCAGCGCAAGCACAACAACCAAATG
GCCACCATCAGCGCCGCCGCGGCGACCACCGTCGTCGCCCGTGCCGCCATCGCCAGGCCGCAGGCCCTAGGTACGTAG-C
GCTACGTGTCGCTGCGCGTGTGTGTGTTCCATGTGCAGCGTTCGCAGCCCAAGCCTGAGCTGAGCTGAGCCGATTAACCG
TGCAGGTCTGCCCCAGCTGAGGACGAGGAGCGAGAGGGTGAGGTGCAGCTACTCCAAGGACGCCAAGGAGGCGACCCCTG
CCGCCGCCGTCCGCGGGGCTGGCGCGTCCCTACTCGCCGCGGCGGGCGCGGTGACCGCGTCCGCGGGGCCGGCGCTGGCG
CTGGTCGACGAGCGGATGTCGACGGAGGGCACCGGGCTGAGCCTGGGGCTGAGCAACAACCTGCTGGGGTGGATCCTCCT
GGGCGTCTTCGGCCTCATCTGGTCGCTCTACACCGTCTACACCTCCGGCCTCGACGAGGACGAGGAGTCCGGCGGCCTCT
CGCTCTAAGCTACACATAGTTTCCT-CGTCGTCTCATGTAATCCGCTCGCGAGCATCGCCATGATCGGTGTAATGTAATT
CCAGAGATGGATATTTGTATCTAAGCGTTTCCATTCT--GAGATGTTTCGCCGTCAGATGGTTTGCTCGCCCCGCCTTGA
AGAC--TGCGTCTCGCGACTTGGATGAATAATAAAAACATCCAAGGAAAATTTCACGCACGCACAGATAGGTCCAAGTTC
TCAGTAAAATTGCTGATCTGTGATGGTATGTGCCATTTTGGCCATATAGTTCCTTTGCTTCTAGTGTACATAACTTTACA
TCAGCTATTTGATCAAACCCATATAACAGAACATATATCGGTTCGCTGCAACAGAATATTAACTTTTTGATCTACAACAA
AATCTGTTGATGAATGTTGATTCTCAAGGTGCTCCAGGTTAGGTGTAAAAACTGGTGCCTACTCTAATGGTCAGCTGGTA
CTATCTTCAATATGATTGTCCTGAGTCACAATCTCTTCAGCAGTAACTTCTATCTGTTCAGAGATGCTTAAGGTGACCTC
GGAAAAAATTTCAGTGTTTCCTTCGGACGAGCCACCAGTAGCATCAGTAACTTCTATTGGCTCAGAATCGCCAGTTACCA
CAATATTTTCAAGGTGCTGAGCTCTTGACCTGGTTTTCAAAGGCTCATCAGGTGGGCTTGTGGCTGGATGAGAGATCAAT
ATTACAGAACTCGATTGAATCTGGACACTGGATTGGTCCACATAAGATTCATCGGGGTGCTCATGACTTCTAGAATTCTG
CGTGTTATCCTCTTCGCCATGGTATGATATGCCAAGTTTCTGTGCATGACTCAATCCTGGACAAACTCCCTAGCAAAAAG
ATGTATCGCAGTCAGAAAAGAAAAACACACCTTCAACTTCAAACCAACGTATATACTAGATCGAAGTGACAAAAGATCTT
AAAAGATCCGCTTGGTAAGTGTGGTATTCCTGTACAATAGCACAAGCACCATAATAAAC
>chr3B_372
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----------------------------------------------------AGTGTGGCTCAGAGTTTGTGAACCTTAA
GTTAGACAAGTTTAGCAAAATTTGAGTGGCAAACTATGACAAAATTAACCTC--AAACCAAACAGGCCCATAGTTTAAGA
GTTCAATGGCCGTCTAAAAGAAGTTGAGCAAGTTGGGTAGCCCATAAGCTAAGTGTAATTTATCCTTCTTGGATTATGGC
ATGCATATGCACATACCGTATATGTAGGTTTTATATAATAGGTCGAAATGAAACAAGTGGGGCCAAAACTTCCTATAGCC
GGGCTAGAGAATTAGCATCGGGACAACATGCAATTAATTAATCAACATGGCAAAAATTCCTACAACATGCGATTTCTCCT
CTCGAAATACCAGTACCACTCAGCTAAACTAGAGTCGCTGTGCAGACGTCCACTTATTTCCATCGGAGAATCTGCGGGTC
CACGCGGCAAGCGCTAATTGGCCACGACAGGATAGCCAATGTCCCGCCTCACCCAATCCTGGTGGTGCCAAGCGATCCGC
GGCCTCGCTTATTGTCGATAACTCGATATTTTCACACGTCGCCTTATTAAGGAAACACCCTGCGGACCAGCACACGCTAG
CCAAGCAAGACCCGAGCAAGCCACACTCTCCAGCACCAGCAGAGGCCGGCGGCAAAGCAGCGCAGCACAGCAA-CAAATG
GCCACCATCAGCGCCGCCGCGGCGACCACCGTCGTCGCCCGTGCCGCGATCGCCAGGCCACAGGCCCTAGGTACGTAGCC
GCTACGTGCCGCCA----TGCGTGTTTTCCATGTGCAAAGTTCGCGGCCCAGGC-----CTGAGCTGAGCCGATTAACCG
TGCAGGTCTGCCCCAGCTGAGGACGAGGAGCGAGAGGGTGAGGTGCAGCTACTCCAAGGACGCCAAGGAGGCGACCCCTG
CCGCCACCGTCCGCGGGGCCAGCGCGTCCCTGCTCGCCGCGGCGGGCGCGGTGACCGCGTCCGCGGGGCCGGCGCTCGCT
CTGGTCGACGAGCGGATGTCGACGGAGGGCACCGGGCTGAGCCTGGGGCTGAGCAACAACCTGCTGGGGTGGATCCTCCT
GGGCGTCTTCGGCCTCATCTGGTCGCTCTACACCGTCTACACCTCCGGCCTCGACGAGGACGAGGAGTCCGGCGGCCTCT
CCCTCTAAGCTACACATAGTTTCTCCCGTCGTCTCATGTAATCCGCTCGCGAGCATCGCCATGATCGGTGTAATGTAATT
CCAGAGATGGATATTTGTATCTAAGCGTTTCCATTCTGAGAGATGTTTCGCGGTCAGATGGATTGCTTGCCCCGCCTTGA
AGACCGTGCGTCCCGCGATTTGAATGAATA----AAACATCCAAGGAAAATTTCACGCACGCACAGATAGGTCCAAGTTC
TCAGTAAAATTGCTGATCTGTGATGGTATGTGGCATTTTGGCCATATAGTTCCTTTGCTTCTAGTGTACATAACTTTACA
TCAGCTTTT-GATCAAAACCATATAACAGTACATATATCGGATCGCTGCAACAGAATATACTTTTTTTGATCTACAACAA
AATCTGTTAACGAATGTTGATTCTCAAGGTGCTCCAAGTTAGGTGGAAAAACTGGCGCCTACTCTAATGGTCAGCTGGTA
CTATCTTCAATATGATTGTCCTGAGACGCAATCTCTTCAGCAGTAACTTCTATCTGTTCAGAGATGCTTAAGGTGACCTC
GGAAAAAAATTCAGTGTTTCCTTCGGACGAGCCACCAGTAGCATCAGTAACTTCTATTGGCTCAGAATCGCCAGTTACCA
CAATATTTTCAAGGTGTTGAGCTCTTGACCTGGTTTTCGAAGGCTCATCAGGTGGGCTTGTGGCTGGATGAGAGATCAAT
ATTACAGAACTTGATTGAATCTGGACACTGGATTGGTCCACATAAGATTCATCGGGGTGCTCATGACTTCTAGAATTCTG
CGTGTTATCCTCTTCGGCATGGTACGATATGCCAAGTTTCTGTGCATGACTCAATCCTGGACAAACTCCCTAGCACAAAG
A--TATCGCAGTCAGAAAAGAAAAACGCACCTTCAACTTCAAACCAACGTGTATACTAGATCGAAGTGACAAAAGATCTT
AAAAGATCCTCTTGGTAAGTATGGTATTCCTGTAGAATGGCACAAGTACCATAATAAAC
>SNPs
SSSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----SSS----S-------S-----------------
-S---------S--S---------S----S-------------------S-S--------S-------------------
--------S-S---------------------------S-------------SS------------------S-------
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--------------------------S-------------SS--------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------S-------------S---------------S----
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-------------------------------------S------------------------------------------
------------------------------------------------------------------------S-------
--S-----------------------------------------------------------------------------
----------S---S---------------------------------------S--------SS---------------
------------------------------------------------------------------------------S-
-S------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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--------------------S-S---------------------------------------------------------
------------------------------------------------------------------S------------S
----SS-S--------------------------------------S------------------------S--S-----
-----------------------------------------------S-S------------------------------
---------------S-----------S----------------S-----------------------------------
------------------------------------------------S-------------------------------
----------------S---------S------------------------------------------------S-S--
------------------------------------------------------------------------S-------
----------------------------S-----------------S-----S---------------------------
---------------------------------------S----------------------------------------
-----------S----S---------------------------------------------------------------
-SS---S--------SS-------------------------------S-------------------------------
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>forward_30
----------GCCTTGATGCTTGGGAGACT--------------------------------------------------
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>reverse_1184
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---------------------------------------------------------------CATGCCGATTAACCGTG
CAG-----------------------------------------------------------------------------
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>forward_192
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------------GTTTAGCTGGGTGGCTGAGT------------------------------------------------
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>reverse_1727
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----------------------------------------------GAAATTTCACGCACGCACAG--------------
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