>input_sequence_78840
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGGACAAGGCATTCCGGTACATCGCC
GACAACGGCGGGGCGGCCACCGAGGACGCCTACCCGTACACGGCCCAGCAGGCCTCCTCCTGCAACA-------------
--------------------------------------------------------------------CCGGGGCGCCCC
GCGTGGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACAACGAGAAGGCGCTAAGGAAGGCTGTGGCC---------
------GCACAGCCGGTGTCCGTGGCCGTCGACGCGGGCAGG------TTTCAGTTTCATTCGGAGGGGGTGTTCGCCGG
GGAGTGCGGGACCGAGCTGGACCATGGCGTTGCGGTGGTGGGGTATGGCGCCACCGTAGACGGCACCAAGTACTGGGTCG
TGAAGAACTCGTGGGGTGAGGAGTGGGGCGAGATGGGATACATCCGCATGGAGCGCGACGTCAAGGATAAGAAGGGCCTA
TGCGGGATCGCCATGGGCGCTTCCTACCCGGTCAAGACCTCGCCCAAC--------CCTCAGTC------TGTCCATGAC
GAACTCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3A_1_TraesCS3A01G055000
CGCGGGCGCGCGGGGATAGGCCGGGGAAGCCTGAACGGTCGCCGGGGGGCGCGGGCGGCGGCGGCGGCGCGGCCGGACGG
GGGGTGGAAGTGGGAGAGGAAGTGCGGGCGCGAGCGCTGGAGTGTGCCGCGCGCTGCAGCGGGCGCCCGAAATACACCGC
GCGTCTAAGTGTTTTCGACCGCGCGCCCAACCCGTTATAGCGCGCGCGCCGTTTTTGCGCGCCCGCTGGAGCGACCCGCC
GCGTTGCGCGCGCGCTAAAACGGCCTAATTTGCGGCGCGGCGCTAGTTTAGCGCGGCTGTTGGAGATGCTCTTATGGGTC
GGGAGAAGGACGGCCAACTAGCTATGCCATATAGCGCAAGCTTGTTGACCACAGTGAGAAAGCTTTTGGAATATTTTATT
TTAAGGTGAGGATTTTTTAAAATATATTTTAAAATGGAGGTGAGGATCCTATGCATTTTTTAAATGAAAGGCTATGCAAA
GTGGCGCTCACTGGTAGGTACAATGGTAAATTTTTTCTTTTTATTTGGTTTTTTCAGATGGAGGAGAGGAACTTTTTTTT
TTTAGAGAAGGCAAGGAACGCATGTATTTTTGGGGCCTGGGGCACACGAACTTTGGAGTTGGGGGGACGCGCACTGCCCA
TGAAGATGAAGTAGCAAGCATATATGCACCGTCATGAAGATGAAGCTCCTGAAGTGCATGCATCTTCCGCCGCACCTACG
CCTCCTCCCGCATCGCGCACCACCGCATGTTCAGCCCAAAGGCTAAGGCAGGTGGTGGGGGTTTCATGCACGGCT-----
--------CCCGTCTTCTGTCGACTGGCGGCAGAAGGGCGCGGTGACTGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTG
CTGGGCCTTCTCGACGATCGCAGCCGTGGAGGGCATCAACGCGATCCGGACCAAGAACCTGACGTCGCTGTCGGAGCAGG
AGCTGGTGGACTGCGACAACGCCGACGGCAACTCCGGCTGCCACGGCGGCCTCATGGACAAGGCATTCCGGTACATCGCC
GACAACGGCGGGGCGGCCACCGAGGACGCCTACCCGTACACGGCCCAGCAGGCCTCCTCCTGCAACA-------------
--------------------------------------------------------------------CCGGGGCGCCCC
GCGTGGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACAACGAGAAGGCGCTAAGGAAGGCTGTGGCC---------
------GCACAGCCGGTGTCCGTGGCCGTCGACGCGGGCAGG------TTTCAGTTTCATTCGGAGGGGGTGTTCGCCGG
GGAGTGCGGGACCGAGCTGGACCATGGCGTTGCGGTGGTGGGGTATGGCGCCACCGTAGACGGCACCAAGTACTGGGTCG
TGAAGAACTCGTGGGGTGAGGAGTGGGGCGAGATGGGATACATCCGCATGGAGCGCGACGTCAAGGATAAGAAGGGCCTA
TGCGGGATCGCCATGGGCGCTTCCTACCCGGTCAAGACCTCGCCCAAC--------CCTCAGTC------TGTCCATGAC
GAACTCTGATCAATACGCCAA---CAGGAGTATATTACATA---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CTAGTAATTACTGCAAACTAGTAGAAACAAAATAAAA
TCAATCACGATGAAATTAACGCATGCATCAGCTACTTGTAAAGAAGTAATCATTATTGTCATGAGCATTTTGCTATATAT
ATCAAATAAAGACAATATTATCTCTGTGTGACTTTGTCGAAATATCTCTGTGTGTAATCTTTAAGGTTCTATTCAATCAA
CTACTAACGCTTTAATTCTAGATCATGCAATGCCTGCTTTATGAG--GAGGTGGATGTCACTA---CAGACTTGATTAGC
AAGCCACCATCAAGAAGTAC--CGGGTTTTGTCAGCATCCGAACCTGAAACCTGAAGAAATC----AATAATCAACTCTT
CTGTGTGAAAGCAGTACTACCTCTTTTTTCTTTCGACATTTTTTTGATAAAAGAGAGCTCTCTTTCCGATTTTCATTAAA
AGAAATCATCAAGTCTTACAGCAAAGAAAAGCGAAAACTCAAAAGCTACCATAGCTATCCCCCGGATGAGCACTGGCTGT
TGAGAAAGAGGGGGAGCCATCCCTCTTTCTTT-CTTTCGACA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TAGTAGCTCGTTTTGTTATAACGCTTAGTAGAGCTTACTGTTTCGCGCCCCTGGACGATGTTACTGCAATTTGCGA
TCCTGCATCCGACAGCTTTCGGTTTTCTAAGCATTCAGGCCTTGTACAATGGGAGATGCTTAGAGGGATGCTTAGAAAAA
TAAATCGAGATTTTCTGAAGCACTGGTGCCTATTTCTACAGAAGAGACGCTTAGTTAAGCGTCTACCCTGTACAAATAAG
CACCGGTGCTTAAAAAAAGTCTGATTTATTTCTCTAAGCACCTCCTCTAAGCACCTCCATTGTACAAGACCTCACTGTTA
ACTTTCCGACAACAGCTTTGCTGCACTTTAGCTTTACTATTACCTCCACTTTTATGAGGTTGTAAAAAGCCATGGTTTTG
GAGCAGAAGTGGGCATCTCTCCTTGTAG
>chr3A_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCCTCCCGTGTCTCCCACCACCGCATGTTCAGCC------CTAAGGAGGGTGGCGGCGGCTTCATGCACGGGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAAGGCGCGGTGACCGCCGTCAAGGACCAGGGACAGTGCGGCAGCTG
CTGGGCTTTCTCGACGATCGCGGCCGTGGAGGGCGTCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCCGAGCAGC
AGCTCGTGGACTGCGACACCAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCAGTACATCGCC
AAGCACGGCGGGGTGGCCGCCGAGGACGCGTACCCCTACAAGGCCCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCTGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTTCCGGCCAACGACGAAGCGGCGCTGAAGAAGGCGGTGGCC---------
------GCGCAGCCGGTGGCTGTGGCCATCGAGGCTAGCGGGTCGCACTTCCAGTTCTACTCGGAGGGGGTGTTCGCGGG
CAAGTGCGGGACCGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGCCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGCCGGAGTGGGGCGAGAAGGGGTACATCCGCATGAAGCGCGATGTGAAAGACAAGGAGGGGCTC
TGCGGCATCGCCATGGAGGCGTCCTACCCCGTCAAGACCTCAGCCAAC--------CC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3A_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCCTCCCGCGTCTCCCACCACCGCATGTTCAGCC------GTAAGGAGGGTGGCGGCGGCTTCATGCACGAGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAGGGCGCGGTGACCGCCGTGAAGGACCAGGGACAGTGCGGCAGCTG
CTGGGCTTTCTCGACGATCGCGGCCGTGGAGGGCGTCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCCGAGCAGC
AGCTCGTGGACTGCGACACCAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCAGTACATCGCC
AAGCACGGCGGGGTGGCCGCCGAGGACGCGTACCCCTACAAGGCCCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCTGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTTCCGGCCAACGACGAAGCGGCGCTGAAGAAGGCGGTGGCC---------
------GCGCAGCCGGTGGCTGTGGCCATCGAGGCTAGCGGGTCGCACTTCCAGTTCTACTCGGAGGGGGTGTTCGCGGG
CAAGTGCGGGACGGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGCCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGCCGGAGTGGGGCGAGAAGGGGTACATCCGCATGAAGCGCGATGTGGAAGACAAGGAGGGGCTC
TGCGGCATCGCCATGGAGGCATCCTACCCCGTCAAGACCTCAGCCAAC--------CC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3B_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCTTCCCGCATCGCGCACCACCGCATGTTCCACC------CTAAGGCAGGTGGTGGGGGTTTCATGCACGGCGACAGG
ATTTCCGCCCCGTCGTCGGTCGACTGGCGGCAGAAGGGCGCGGTGACCGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTC
CTGGGCCTTCTCGACGATCGCAGCGGTGGAGGGCATCAACGCGATCCGGACCAAGAACCTGACGTCGCTCTCGGAGCAGG
AGCTGGTGGACTGCGACACCGCCGACGGCAACTCCGGCTGCAACGGCGGTATCATGGACAAGGCATTCCAGTACATCGCC
GATAATGGCGGGGTCGCCACCGAGGACGCCTACCCCTACACGGCCCAGCAGGCCTCCACCTGCAACACCGGGGCGCCCCG
CGTTGTCACCATCGACGGGTACGAGGACGCCTACCCCTACACGGCCCAGCAGGCCTCCACCTGCAACACCGGGGCGCCCC
GCGTTGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACAACGAGAAGGCGCTGAAGAAGGCTGTGGCT---------
------GCACAGCCGGTGTCCGTGGCCGTCGACGCAGGCGGG------TTCCAGTTTTATTCGGAGGGGGTGTTCACCGG
GGAGTGCGGGACCGAGCTGGACCATGGCGTTGCGGTGGTGGGGTACGGCATCACCGTAGATGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGCGAGGAGTGGGGCGAGAATGGGTACATCCGCATGGAGCGCGACGTCAAGGATAAGAAGGGCCTT
TGCGGGATCGCCATGGACGCTTCCTACCCGATCAAGACCTCGCCCAACGCCCCAACCCCGAGTC------TGTCCATGAC
GAGCTCTGATTAATACTCCATGACCAAGAGTATATTACATA---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTAGT---TACTGCAAAC---TAGAAACAAAATAAAA
TCAATCACGATGAAATTAACACATGCATCAGCTGCTTGTAAAGAAGTAATCATTATTGTCATGAGCATTTTGCTATAT--
--CAAATAAAAACAATATTATCTCTGTGCTACTTTGTCGAAATATCTCTGTGTGTAATCTTTAAGGTTCTATCCAATCAA
CTACTAACGCTTTAATTCTAGATCATGCAATGCCTGCTTTATGAGGAGAGGTGGATGTCACTAGTACAAACTTGAGTAGC
AAGCCGCCAGCGCCGCCAAGTGCGAGCTTTGTCAGCATCCGAACCTGCAACCTGAAGAAATC----ATTAACTCTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGGGTGGAAGCAGTAGCTCTTTTTTC-CTTTCGACA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----T---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3B_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCTTCCCGCGTCTCTCACCACCGCATGTTCAGCC------GTAAGGAGGGCGATGGCGGCTTCATGCACGGGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAGGGCGCGGTGACCGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTG
CTGGGCTTTCTCGACGATAGCGGCCGTGGAGGGCATCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCCGAGCAGC
AGCTCGTGGACTGCGACACGAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCAGTACATTGCC
AAGCACGGCGGGGTGGCCGCCGAGGACGCGTACCCCTACAAGGCGCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCCGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACGACGAAGCGGCGCTGAAGAAGGCGGTGGCC---------
------GCGCAGCCGGTGGCCGTGGCCATCGAGGCTAGCGGGTCGCACTTCCAGTTCTACTCGGAGGGGGTGTTCGCGGG
CAAGTGCGGGACGGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGCCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGCCGGAGTGGGGCGAGAAAGGGTACATCCGTATGAAGCGCGATGTGGAAGACAAGGAGGGGCTC
TGCGGCATCGCCATGGAGGCGTCCTATCCCGTCAAGACCTCAGCCAAC--------CCAAAGCATGCTGGTGTCCATGAC
GAGCTCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3B_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCCTCCCGCGTCTCTCACCACCGCATGTTCAGCC------GTAAGGAGGGTGGCGGCGGCTTCATGCACGGGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAGGGAGCGGTGACCGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTG
CTGGGCTTTCTCGACGATCGCGGCCGTGGAGGGCGTCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCTGAGCAGC
AGCTCGTGGACTGCGACACGAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCGGTACATCGCC
AAGCACGGCGGGGTGGCCGCCGAGGACGCGTACCCCTACAAGGCCCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCCGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACGACGAAGCGGCGCTGAAGAAGGCGGTGGCTGCGCAGCCG
GTGGCTGCGCAGCCGGTGGCCGTGGCCATCGAGGCTAGCGGGTCACACTTCCAGTTCTACTCGGAGGGGGTGTTCGCGGG
CAAGTGCGGGACGGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGTCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGGCGGAGTGGGGCGAGAAGGGATACATCCGCATGAAGCGCGATCTGAAAGACAAGGAGGGTCTC
TGCGGCATCGCCATGGAGGCGTCCTACCCCGTCAAGACCTCAGCCAAC--------CC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3D_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCCTCCCGCGTCTCTCACCACCGCATGTTCAGCC------GTAAGGAGGGCGATGGCGGCTTCATGCACGGGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAGGGCGCGGTGACCGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTG
CTGGGCTTTCTCCACGATCGCGGCCGTGGAGGGCGTCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCCGAGCAGC
AGCTCGTGGACTGCGACACCAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCAGTACATCGCC
AAGCACGGCGGGGTCGCCGCCGAGGACGCGTACCCCTACAAGGCCCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCCGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTGCCGGCCAACGACGAGACGGCGCTGAAGAAGGCGGTGGCC---------
------GCGCAGCCGGTGGCCGTGGCCATCGAGGCTAGCGGGTCGCACTTCCAGTTCTACTCGGAGGGGGTGTTTGCGGG
CAAGTGCGGGACGGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGCCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGCCGGAGTGGGGCGAAAAGGGGTACATCCGCATGAAGCGCGATGTGAAAGACAAGGAGGGGCTC
TGCGGCATCGCCATGGAGGCGTCCTACCCCGTCAAGACCTCAGCCAAC--------CC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3D_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCCGCCGCGCCTACG
CCTCCTCCCGCGTCTCTCACCACCGCATGTTCAGCC------GTAAGGAGGGTGGCGGCGGCTTCATGCACGGGAGCGCT
CGGGACGTGCCGCCTTCGGTGGACTGGCGGCAGAAGGGCGCGGTGACCGCCGTCAAGGACCAGGGGCAGTGCGGCAGCTG
CTGGGCTTTCTCGACGATCGCGGCCGTAGAGGGCATCAACGCGATCCGCACCAAGAACCTCACGTCTCTGTCCGAGCAGC
AGCTCGTGGACTGCGACACGAAGTC---CAACGCCGGCTGCAACGGCGGCCTCATGGACTACGCCTTCCAGTACATCGCC
AAGCACGGCGGGGTGGCCGCAGAGGACGCGTACCCCTACAAGGCCCGGCAGGCCTCCTCCTGCAACAAGAAGCCGTCCGC
--------------------------------------------------------------------------------
-CGTGGTCACCATCGACGGGTACGAGGACGTGCCAGCCAACGACGAAGCGGCGCTGAAGAAGGCGGTGGCC---------
------GCGCAGCCGGTGGCCGTGGCCATCGAGGCTAGCGGGTCGCACTTCCAGTTCTACTCGGAGGGGGTGTTCGCGGG
CAAGTGCGGGACGGAGCTGGACCATGGCGTGACGGCGGTGGGGTACGGCGCCACCGTGGACGGCACCAAGTACTGGATCG
TGAAGAACTCGTGGGGGCCGGAGTGGGGCGAGAAAGGGTACATCCGCATGAAGCGCGATGTGGAAGACAAGGAGGGGCTC
TGCGGCATCGCCATGGAGGCGTCCT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3B_1360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGGGTACATCCGCATGGAGCGCGACGTCAAGGATAAGAAGGGCCTC
TGCGGGATCGCCATGGACGCTTCCTACCCGATCAAGACCTCGCCCAAC--------CCTGAGTC------TGTCCATGAC
GAACTCTGATTAATACTCCATGACCAGGAGCATATTACATAGTACTCCCTCCGTTCTTAAATATTTGTCTTTCTAGACAT
TTCAAATGACTACTACATACGGATGTATGTAGACATATTTTAGAATGTAGATTCACTCATTTTGCTCCGTATATAGTCAC
TTGTTGAAATGCCTAAAAAGACAAGTATTTAGGAACGAATGGAGTATTAATTACAACAAACTAGTAGAAGCAAAATAAAA
TCAATCACGATGAAATTAGCACATGCATCAGCTGCTTGTAAAGAAGTAACCATTATTGTCATGAGCATTTTGCTATAT--
--CAAATAAAAACAATATTATCTCTGTGTTACTTTGTCGAAATATCTCTGTGTATAATCTTTAAGGTTCTATCCAATCAA
C---CAACGCTTTAATTCTAGATCATGCAATGCCTACTTTATGAG--GAGGTGGATGTCACTA---CAGACTTGAGTAGC
AAGCCGCCAGCGCCAAGTGC--CGAGCTTTCTCAGCACCCGAACCTGAACCCTGAAGATATCAATAATTAGCTCTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAGTGGAAGCACTACCTCTTTTTTCT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3B_1466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CATGAT
GAACTCTGATTAGTACTCCATGACCAGGAGTATATTACATA---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GTATTAATTACAACAAACTAGTAGAAACAAAATAAAA
TCAATCACGATGAAATTAGCACATGCATCAGCTGCTTGTAAAGAAGTAACCATTATTGTCATGAGCATTTTGCTATAT--
--CAAATAAAAACAATATTTTCTCTGTGTTACTTTGTCGAAATATCTCTGTGTATAATCTTTAAGGTTCTATCCAATCAA
C---TAACGCTTTAATTCTAGATCATGCAATGCCTACTTTATGAG--GAGGTGGATGTCACTA---CAGACTTGAGTAGC
AAGCCGCCAGCGCCAAGTGC--CGAGCTTTCTCAGCATCCGAACCTGAACCCTGAAGATATCTATAATTAACTCT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GTGGAAGCACTAGCTCTTTTTTCTCTTTCGACATAGTAAGCTCAGGGCATGTACAATGGTTGATAAGATAG
TCTTATCTTAAATCTTGCATGTAATTTAAAGATGATTGAAAAAAATCTATAATGGGTCATTTCTTAGTCTTATCTTCATT
AGCTAGCTATTCCTAAAAACGTGGTGAGACATATTGTGCTAAGATATCATATCTTGTCTTCTCTTAAATAAGAGAAGACA
AACATTTTCTTACGAGTTCTCTCTCCTCTACCTCATCATTTATCTTACGTGTCACTCCTAAGATAGTATCATTGTATATG
CCCTTAGTAGCTCGTTTTCTTATAACGCTAACTAGAGCCTACTGTTTCGCGCCACTGGACCGTGTTACTGCGATTTGTGA
TCTTGGATCCGACATCTACCGGTTTTCTAAGCATTCG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTGTTA
ACTTTCCGACAACAGCTTTGCTACACTTTAGTTTCAATTATACCTTCATTTTTACGAGGTTATAA---------------
----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------
------------------------------------SSSSSS--------------------------------S-----
-----------------S-----------------------------S--------------------------------
--------------------------------------------------------------------------------
------------------S----------------------S--------------------------------------
--S----------S---------------------S--------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-S----------------------
-----------------------------------S---S----------S------S----------------------
---------------------------------------------S------------------------------S---
----------------S----------------S---------------------------------------------S
----------------S------------------------------------------S--------------------
----------S-----S---S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------S------------S--------------------------------------------SS
SS--------S------------------S------------------------------------------S-------
---------------------------------------------------------------------------S----
-----S---S-SSS----------S-S----------------------------------------S---SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----S--S---SS-S-------S--S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S----------S-S------S--------------S------SS---------S-----S--
--S--S--------S--SS-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------S--------S--S-S-SS-----S--S-----S------S---SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGCTCTTATGGGTC
GGGAGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_2319
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
TGAGAAAGAGGGGGAGCC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
