>input_sequence_78838
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------------------------------ATGGCTTACTCCGGCGACGTCGAGGAGGTGCCGGAGCACGGCGCGGCTCA
CCCGGCCGAGGCATGCACGGGCGGCTTGGCGGAGGAAAGCCGGCCGGTCGCGGCCGACGCTACGTCCTCCGATCACCATG
CGGCGGGGGCGGCGCAAGATCAAGCTGGAAGAATGTCTACGTCCAAGGAGAAGCGGGAGGCGGGGAAGCTGCTGCAGCCA
GCGGACAAGGAGGAGGAAGGGGAGACCGCGCGGGAAAGGCTGAAGCGGCACAGGCGGGAGATGGCGGGGAGGGTGTGGGT
GCCGGAGATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGATGGACTGCTCCGCCTTCGACCGCCCGCTCGTGCCGGCCG
GCTTGCTCACTGCGCGCCGGGCGCTCGTGGCCGAGTCCTGCGCGCGCCGCCCGGCCCCGGCACCACCTGCCAGCTCCAGC
CCTCTCCGGGTGCAAGACGGCTGCTCCTGA--------------------------------------------------
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>chr2D_1_TraesCS2D01G292300
CTCCCATCTCTAACTTTTTTGAACGGTTTTTCCTAAAAACCAGCTGCATCG----CACTTGTTATTGACTTTTTAAATAA
AATTTTGTTTTGTTTGGTAAGTCAAGTCAGTACATATGTATGTAATAAATGTTTACCAGTTAAAATCTATTTTTACACAA
TCAGAATAATATAAGAAGGTAAATCAGAGACTAACGTAATACTCCCTCGAATCGAAAAAAAGTGTCTCAACTCTGAACTA
TGGTTGAACCTCAGCTTTGAA-TAAGGTTGGTTCAAT-CTTAGTTCAAAACTGAGACACTTTTTTCTGATCGGAC-----
-----------GCCGTAATTTAAAAGCGTGGACTATGTTTTATGAAAAAGAAATTTGATAGGGTTATTATAAAAAAAAGA
CAGAAAAGAAATTTGATTGCTCGGGTCGGGTGGATCTTTCCTCGCTCCTCCCTTCGTCCC--------------------
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---------------------ATCAGTAATGTCGGGTCAGAGTCTCGAAGTTAATGGGGATAGACGAACACTGACTGCTC
GGTGGCCCCGGCAAAAGATCAAATCTACCGGAGGTATCTACCGATTGGCCGTCGTGCATCCAGCCCGCGCTGCGCTGCCG
CCAGCCTCAGAAACGCAAACCGCGCCACGCAGCCGCAGCCGCGCACACACACATTTACGCCCGCGCGCGCCTCACAGTTA
CTTCACCTACTGCTTCCACGGCTCCGGCCTCCGGCCACGTCGCGAGGGCAAGGGCAGCCACATATATGGCGGAATGCGCC
GCAGCGGCAGGCCACGCTCACCTCGCAGCCACCATAGGCGAGCCCCTTCCATCTCCTTCCCTTGCTCCCCCTAACGTGTC
CGCCTCTTCCCCCAACCGTCCCCCACCT-CCCCCCATCTTTTAATCTCCCACCGCCCCCGGCCTCGTTATATTGGGGTCA
GCAAGGCAGCAGACAACCGGTGT-TGCCAAGGGCTCAAGAATCATTGCTGTTCTAGCTAGCTTCCTTTGGCCTGCGTAAT
TAGTGTGGGT-----TGCTTGATCTGCTGCATGGCTTACTCCGGCGACGTCGAGGAGGTGCCGGAGCACGGCGCGGCTCA
CCCGGCCGAGGCATGCACGGGCGGCTTGGCGGAGGAAAGCCGGCCGGTCGCGGCCGACGCTACGTCCTCCGATCACCATG
CGGCGGGGGCGGCGCAAGATCAAGCTGGAAGAATGTCTACGTCCAAGGAGAAGCGGGAGGCGGGGAAGCTGCTGCAGCCA
GCGGACAAGGAGGAGGAAGGGGAGACCGCGCGGGAAAGGCTGAAGCGGCACAGGCGGGAGATGGCGGGGAGGGTGTGGGT
GCCGGAGATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGATGGACTGCTCCGCCTTCGACCGCCCGCTCGTGCCGGCCG
GCTTGCTCACTGCGCGCCGGGCGCTCGTGGCCGAGTCCTGCGCGCGCCGCCCGGCCCCGGCACCACCTGCCAGCTCCAGC
CCTCTCCGGGTGCAAGACGGCTGCTCCTGAGCTACTGCTTCACC------TCTACATCTACATGCACATATATGCCTAGC
TTCTTCTTGCTCAAATAAGA------TACTGTCCTTCTTGTTTCCGAGTTATGAAGGTCGATCTTTTTGTGGTTTAATGG
TGACGATGTGAAGATTACATTTACATTTCAGCTTATTTAGCTTA----TACTACCAATAATTTCAGAAACAACCATCTCG
ATGCGGTACGATTGATGCAAAATTTTAGCTAGTGATGATCGACCGAGGAGCGTTGTTCTCCAAGTCTCTGTAGATAGATG
TGTATGTTGTGCTTGATGATGTTGCTAGTACTGTTAAGAGCCATATCATAT----GTAGTAGCTACCACCTTTGATTAGA
CAGTTCGGTGAAAA----AAAATTCTATGGACTTTAACGAGTCAATACGATTGGGTTGCTGGTATAGATCGCCATAAAGC
TCAGGATCGAATTAATTTGTGCTCGTTGTTTCGTCCAGGTGAACCTTTTCAA-CACTAGTGACGTGGTTTCATGCCATTC
TTTCGTTTCTTCTTCTCCTTTTGAGGAACAGATTCTCGCCTCTTTCGTTGGTTGTAAGTGGCCACTGCTCGTTTGGCATT
AACCACGTGACCTAGCTAGTACATGCTGCGCGCATACCCTTGCTAGTACTACCTAGTAGCTAGTATGTACTGTAATTCGA
AACTACTCTGCGGCCGGCACTC------TGCCCGATTTGCAGACGACACTTCATCCAGCGGCCCTGGTCTTG--------
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------------------------------CACACACTTGGTTCAAACTGTACAGGAATCTTTGCTAGCCAATTGCTGCT
TCTAGAAGTTCCCTCCGTTTTTATTTACTCTGCATATTAGAGTTGACTGAAGTCAAACTTCGTAAAGTTTGACCAAGTTT
ATAGAAAAAATTATAAACATTTACAGTAACAGATCTATATGATGTGAAAGTACATTCAATAATAAATCCAATAGTATTGA
TTTGTTATTGTATAATTTAATATTTTTATTTATAAACTTGATCAAAGTTTATAAAGCTT
>chr2A_1
CTCCTATCTCTAATTTTTTGGGTCGGTTTTTCCCTAAAAACCAGCTCAAGTATCTCACTTGTTATCGACTTATAAAATAA
AATTTTGCTTTGTTTGATAAGTCAAACTAGTACATATGTATGTAATAAATGTTTATCAAATAAAATCCATTTTTACACTA
TCAAAATAATATAAGAAGATAAATCCGAGACTTACCTAGTACTCCCTCCAATAGGAAAAAAGTGTCTCAACTGTAAACTA
AGGTTGAACCTCAGCTTTGAACTACGGTTGGTTCAAACCTTAGTTCAAAGTTGAGACATTTTTTTCTGATCGGAGGGAAT
ATTATATCTATGCCGCAATTTAAAAGTGTGGACTATGTTTTATGAAATAAAAATTTGATTGAGTTAT---CAGAAAAAAA
AAGAAAAGAAATTTGATTGCTCGGGTCGGGTGGATCTTTCGTCCCTCCTTCCTTCGCCCC--------------------
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---------------------ATCAGTAATGTCGGGTCAGAGTCTCGAAGTTAATGGGGCTAGACGAACACTGACTGCTC
GGTGGCCCCCGCAAAAGATCAAATCTACAGGAGGTATCTACCGATTGGCCGTGGTGCATCCAGCCCGCGCAGCGCTGCCG
CCAGCCTCAGAAACGCAAACCGCGCCACGCAGCCGCAGCCGCGCACACACACATTTACGCCCGCGCGCGCCTCACAGTTA
CTTCACCTACTGCTTCCACGGCTCCGGCCTCCGGCCACGTCGCGAGGGCAAGGGCAGCCACATATATGGCGGAATGCGCC
GCAGCGGCAGGCCACGCTCACCTCGCAGCCACCATAGGCGAGCCCCTTCCATCTCCTTCCCCTGCTCCCCCTAACGTGTC
CGCCTCTTCCCCCAACCGCCCCCCACCT-CCCCACATCTTTTAATCTCCCCCCGCCCCCGGCCTCGTTATATTGGGGTCA
GCAAGGCAGCAGACGACCGGTGTTTGCCAAGGGATCAAGAATCATTGCTGTTCTAGCTAGCTTCCATTGGCCTGGGTAAT
TAGTGTGTGT-----TGCTTGATCTGCTGCATGGCATACTCCGGCGACGTCGAGGAGGTGCCGGAGCACGGCGCGGCTCA
CCCGGCCGAGGCATGCACGGGCGGCTTGGCGGAGGAAAGCCGGCCGGTCGCGGCCGACGCTACGTCCTCCGATCACCGTG
CGGCGGTGGCGGCGCAAGATCAAGCTGGAAGAATATCCACGTCCAAGGAGAAGCGGGAGGCGGGGAAGCTGCTGCAGCCA
GCGGACAAGGAGGAGGAAGGGGAGACCGCGCGGGAAAGGCTGAAGCGGCACAGGCGGGAGATGGCGGGGAGGGTGTGGGT
GCCGGAGATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGATGGACTGCTCCGCCTTCGACCGCCCGCTCGTGCCGGCCG
GCTTGCTCACTGCGCGCCGGGCGCTCGTCGCCGAGTCCTGCGCGCGCCGCCCGGCCCCGGCACCACCTGCCAGCTCCAGC
CCTCTCCGGGTGCAAGACGGCTGCTCCTGAGCTACTGCTTCACCTCTACATCTACATGCAC--------ATATGCCTAGC
TTCTTCTTGCTCAAATAAGAATAAGATACTGTCCTTCTTGTTTCCGAGTTATGAAGGTCGATCTTTTTGTGGTTTAATGG
TGATGATGTGAAGATTACATTTACATTTCAGCTTATTTAGCTTATATATACTGCCAATAA-TTCAGAAAC----------
----GATACGGTTGATGCAAAATTTTAGCTAGTGATGATCGATCGAGGAGCGTTGTTCTCCAAGTCTCTGTAGATAGATG
TGTATGTTGTGCTTGATGATGTTGCTAGTATTGTTAAGAGCCATATCATATGTA-GTACTAGCTACCACCTTTGATTAGA
CAGTTCGGTGAAAATAATAATA-TCTATGGACTTTAACGAGTCAATACGATTGGGTTGCAGGTATAGATCGCCATAAAGC
TCAGGATCGAATTAATTTGTGCTCGTTGTTTCGTCCAGGTGAACCTTTTCAAACACTAGTGACGTGGTTTCATGCCATTC
TTTCGTTTCTTCTTCTCCTTTTGAGGAACAGATTCTCGCCTCTTTCGTTGGTTGTAAGTGGCCACTGCTCGTTTGGCATT
AACCACGTGACCTAGATAGTGCATGTTACGCGCATACCCTTGCTAGTACCTAGTAGCTCAAAAGCATA--TGTAATTCGA
AACTACTCTGCGGCCGGCCGGCACTATGTGCCCGATTTGCAGGCGACACTTCATCCAGGGGCTCTA--------------
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------------------------GTCTTAAACACACTTGGTTCAAACCGTACAGGAATCTTTGCTAGCCAATTGCTGCT
TCTAGAAGTT----------------------------------------------------------------------
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>chr2B_310
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-----------GCCGCAATTTAAAAGCGTGGACTATGTTTTATGAAAATGAAATTTGATTGAGTTATTATCAAAAAAAGA
AAGAAAAGAAATTTGGTTGCTCGGGTCGGGTGGATCTTTCGTCCCTCCTTCCTTCGTCTATCAGCAGGGCCGTCTCGAGG
AATTCGGGGGCCCGGTGCCAAATGCAAAATAAGGCCTTAAAAAATCTAAAATGTTTTATAAAAAGAAAAAGAATGAATTC
AAACACTCCATAAATTATAGGCTTATACCAAGATAAAAAAAACTGTACCCTGAATTTTAAACGAGCAACTAGCTTGGAAA
TTTTGGTGTGTGACAACTTGGTGAACTAGCCTAGTACTCCTTGCACAGTGCATTAGCTGGACATTGCACATCGGTACGCT
TCCTCTTTGCCGTGTGTGACAACTTGGTCAACTAGCCTAGTACTATATATCTTCTCTAAAACAAATGGATTGATAAACTG
AAGCGTATGCACACAATATACTCACTAGTATAATCATTCAACAGGTAGTTTCAAAAAAAAAAATCGTTCAACAGAACACT
AAATTAAATTGGGAATCAGTTTGAGCACACCTTGTGGACAGATCGGGGATGCCATCACCTAGGTCTCGGACACCGGTGAC
AAAGAAAACTGTGGAATGAATTCTTCATGCCGGCAAGGCAGCCGGTTGTTTCTCCGGGAGGAAACAAAGTGACAACGACG
CTCCGTCTCCGTGCGCCGCCGCCGCCGCCGCACTTCGTCGGTTCACCTCCGTGAGGGCCCTTTTTTCTCTTCCGAGCAGA
CTGCGCGGGGCTAGATCGATAGATCTCGATCGGCGGGCTGTGTCGATCGGGACTAAGGAAAGGCTTATTTTGGGAGATTG
AGGGGCTGGCCCAGTTTGAGAGAAACAGGGACTAGCTGGGCAGGCGTAAGTCTGTGCTAGTTGTGATAAAAGGGCCCAAC
ACGAAAAATATACGAAAAACTGGCCCAAAATCGGGGGCCGCTGGAATTTGGGGGCCCTGTGCGGTCGCACAGCCCGCACA
GGCCCTTGGACGGCCCTGTCTATCAGTAATGTCGGGTCAGAGTCTCGAAGTTAATGGGGATAGGCGAACGCTGACTGCTC
GGTGGCCCCGGCAAAAGATCAAATCTACCGGAGGTATCTACCGATTGGCCGTGGTGCATCCAGCCCGCGCTGCGCTGCCA
CCAGCCTCAGAAACGGAAACCGCGCCACGCAGCCGCAGCCGCGCACACACACATTTACGCCCGCGCGCGCCTCACAGTTA
CTTTACCTACTGCTTCCACGGCTCCGGCCTCCGGCCACGTCGCGAGGGCAAGGGCAGCCACATATATGGCGGAATGCGCC
GCAGCGGCAGGCCACGCTCACCTCGCAGCCACCATAGGCGAGCCCCTTCCATCTCCTTCCCTTGCTCTCCCTAACGTGTC
CCCCTCTTCCCCCAACCGTCCCCCACCTCCCCCCCATCTTTTAATCTCCCCCCGCCCCCGGCTTCGTTATATTGGGGTCA
GCAAGGCATCAGACAACCGGTGT-TGCCAAGGGCTCAAGAATCATTGCTGTTCTAGCTCGCTTTT----GCCCGCGTAAT
TAGTGTGTGTAGCTCTGCTCGATCAGCTGCATGGCTTACTCCGGCGACGTCGAGGAGGTGCCGGAGCACAGCGCGGCTCA
CCCGGCCGAGGCATGCACGGGCGGCTTGGCGGAGGAAAGCCGGCCGGTCGCGGCCGACGCTACGTCCTCAGATCACCATG
CGGCGGTGGCGGCGCAAGATCAAGCTGGAAGAATGTCTACGTCCAAGGAGAAGCGGGAGGCGGGGAAGCTGCTGCAGCCA
GCGGACAAGGAGGAGGAAGGGGAGACCGCGCGGGAAAGGCTGAAGCGGCACAGGCGGGAGATGGCGGGGAGGGTGTGGGT
GCCGGAGATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGATGGACTGCTCCGCCTTCGACCGCCCGCTCGTGCCGGCCG
GCTTGCTCACTGCGCGCCGGGCGCTCGTGGCCGAGTCCTGCGCGCGCCGCCCGGCCCCGGCACCACCTGCCAGCTCCAGT
CCTCTCCGGGTGCAAGACGGCTGCTCCTGAGCTACTGCTTCACC------TCTACATGCAC--------ATATGCCTAGC
TTCTTCTTGCTCAAATAAGA------TACTGTCCT---TGTTTCCGAGTTATGAAGGTCGATCTTTTTGTGGTTTAATGG
TGACGATGTGAAAATTACATTTACATTTCAGCTTATTTAGCTTA----TACTACCAATAA-TTCAGAAACAACCATCTCG
ATGCGATACGATTGATGCAAATTTTTAGCTAGTGATGATCGATCGAGGAGCGTTGTTCTCCAAGTCTCTGTAGATAGATG
TATATGTTGTGCTTGATGATGTTGCTAGTACTGTTAAGAGCCATATCATATGTACGTAGTAGCTACCACCTTTGATTAGA
CAGTTCGGTGAAAA----AATA-TCTACGGACTTTAACGAGTCAATACGATTGGGTTGCAGGTATAGATCGCCATAAAGC
TCAGGATCGAATTAATTTGTGCTCGTTGTTTCGTCCAGGTGAACCTTTTCA-ACACTAGTGACGTGGTTTCATGCCATTC
TTTCGTTTCTTC---TCCTTTTGAGGAACAGATTCTCGCCTCTTTCGTTGGTTGTAAGTGGCCACTGCTCATTTGGCATT
AACCACGTGACCTAGCTAGTACATGCTGCGCGCATACCCTTGCTAGTACCTAGTAGCTCAAAAGCATA--TGCAATTCGA
AACTCCTCTGCGGCCGGCACTC------TGCCCGATTTGCAGACGACACTTCATCCAGCGGCCCTGGTCTTACACACAAT
TTTTTTTTAAAGAAGGATGACCCCAAGCCTCTCCATCTGAAAGATGCATGCGGTCATTTTATTGACTCAAGGACCTTACA
AAGTAGAACAACAATATGCCTGAATCCATCATTTTGGCAATATGCCGCTACTCCTATCCATATGTTGAAGAGGTGCAAGC
CGGACCACGTACCCAGCCTCTCACCTAAGCCTAACATCTAAAGCCGGAGGCCCCGACCGAGCCATATGCCAGGTCCGAGG
CACAAACCGGTCCGACGCGCTCACATGTGTCATCACCGTCATCTTCCACTGGTCCATCTTCAGAGCAGATTGAGGTGTCA
ATCTAGGTAGGTCCTCCGCCATCGACGCCATCATGATACCAAACGACGACCTCCACCTACGCAAGCCTTGGCAGGTCCTC
CGTCATCGACGCCACCACGACGCCAAACGTCGACCTCCACGAACACGAATTCATCTCCGAGCAACGGACGTAGATCCATG
CTAGGATAGGACCGCACCACCGTCGTCGCCCACCACCCGCAAGCGCCACCCAGCCCCAAGATTCCCAAAGCGGCGCCTTC
AAGAAGGGAACGGCGCCATGAGCGCCACCACCGTCCAACAAAGTTAGGGATTTCGCTCAGGAGACCTAGGGGAAGGGGAA
GTGAGGAGAGATCAGTCCATACCGACGCCTCCAAGGAGGAGAACGACGCCCTCAGGCGTCGCCGTCAGCGTGGCCGACCA
GGGATTTCGCTAGAACTAGATCCCCGCCACCAGCGACGCCTCCTGTAGAGAACCGACGACCAAGGGAGGCGCGGCCCGAC
CAGGCTGGCCCGCACGCCGAATAGGGGAGGAGGGGGGGTGCCAGATCGCGTGCAACGACCGCCGCAGAAGCCGCCGCCAG
CCGCTAGCGACCACCGAAATCCCGCAGCCTGCACGGTCAGGACACCAGATCCACCACCCGCGCGGCTGCCCCTCGGAGCC
CGCCGTGCCTCGTCAAAGAAGCCGTCATTCCAGATCCGGGACTCCCCACGCAGGCAGGGCAGCCGAGGCCCCGTCGCCAC
CATCCTTGGCGCCCCGGGCTTGCCCGGCAACTGCCTCAGGCGGCGGCGAAGAGGTGGGGCAAGGTGAGGAGGGGACCACG
GCGGCGCGGCTAGGGATCCCCCGCCGCCGCTGGGGGAGGCGAGGCGGGGGTCGCGGGGTGGCCTTTCATTTCCCGCGTCT
GCCTGAATCTGGCGTATCAGACCTGTCTTACACACACATGGTTCAAACTGTACAGGAACCTTTGCTAGCCAATTGCTGCT
TCTAGAAGTT----------------------------------------------------------------------
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>SNPs
----S--------S-----S-SS----------SS----S-SSSSS--SSS--------------S-----S-S------
-------S--------S--------SSS---------------------------S--SS-------S----------S-
---S--------------S------S------S--S--S---------S---S-S-----------------S-S-----
S-----------------------S-----------S------------SS-------S---------------S-----
---------------S-------------------------------------------S-S--------S---------
S---------------------------------------S--S-----S------------------------------
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----------------------------------------------------S---------------------------
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--------------------------------------------------S-----------------------------
-----------------------------------------------------------------S--------------
-------S------------------------------------------------------------------------
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------S-------------------------------------------------------------------------
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---------------------------------------------------------SS--SSSSSSSS-----------
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------------------------------------------------------------S-------------------
-----S------------------------------------S-------------------------------------
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--------------------S-S------------------------------------S--------------------
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-------------------------------------------------SSSS---SSSSS-SSSSSSSS----------
-----------------------------------------------------------------------S--------
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----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_444
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------------------------GTCGGGTGGATCTTTCCTCG------------------------------------
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>reverse_2683
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------------------------------------------CCGAGGAGCGTTGTTCTCC-------------------
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