>input_sequence_78830
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---------------------------------------------------------ATGGCTCCGCGTTCAGGTGCTTT
CTTTCTCCAAGCGGCCGCCGTCGCTGCTGTTCTCGCCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCATGGCTCTCCAT
CGCCAGCACCGCCACCGACAACCTCCACA--------------------CCACCACCTCTGGCGCCGTTGCCACCAAGTC
CGGCGCTGGCGCCGGGACC---GTCATGCAACGACTGTTATTCGCAGTGCTACTTCTCCTGCGACGCCTCCATTTCCTCA
ACGTGCAGCGTATACTGCAACGTTGAAGGTGCCTGCAACTCCTGCAGGGCTAATACCATCAAGGAATGCAGGGCCAGCAA
AAACTGCGCCGGCAGCTGCGACGAGTGCAACGACCCAACCAACTCTTCATGCGCTTTAGCGTGCAGCACCCAATACTGCG
ACAGGTGTCGTTACTGGGAGATCCAGAAGTGCCAGAAAAAGTGCCGCCAGGAGTGCTCCGCACCCAAATGCGTACCTTAG
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_1_TraesCS1D01G326600
TTATCAATGATCCAATGACTGTGATCAAGCTAATGTGCCATTGGATTACCCGGTGGTCCATGTTGCAGATAAAGGAGGCG
GCTTAGAGGATGCTGACGTAGGGGGCAA---GGTTCCTCGTACAAGGATATCTACCATTCCAATTAATATAGGAGTACAA
TATCTTTGATGGCTATTAATTA---GATGATTTGCATGGTTTCACAAATGTAAGACGAACTAATTAAACGTTTTGTGGGT
TGAAGTCCATGGGCTCAATGAATTTAACAATGGAAGAAGTTTAAATGGATGGAGAAAACTTCATGTCCAACCAAGGATAA
AAGAAG-ATTCATCATAATTATTAAGGACAACCATTTTTATT-TCAAATTACAAAAAAGTATTAAACACAACCAAAAAGC
ATAAG--CACGCGCACACAAGTGGTTAGTCAGGAACTATACTAAAAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTATTTTAGCTGCAAA-AAATATACATACCATATATTAG-TT
TTTGTA--------------------------------------------------TCAAAATTGCTAGCGTGTGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
A---AATGAGGAACAAATCG-CATGGTCCTGGTGTTGATTTACCCTATTCCCATCAGAGTAACCT---------------
--------------TGGCGGCCACAACCGCAG-TTT--TTTGGGCATCTAATTAACCTTTCTCTCAATCGGAATGTTTCA
CCAGTAAAGTTTAGTTGTTCCTACTAATCAAA--GTAAAGTGTTCAAAATCTACATTTCAATATC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TTCCAAAACAA-GGCAGT
--TGTCAGGACTGTCGTATAATTCAGTTTTCTCTTCTCCACTTAAACTATCGAACCCAAATTGCCCGGTCAAGATGAATA
ACTAATGA--------TACTAATATGTGAAGTCAAACTTGTAACATGCATGGCGCAGATCTCAAGT--------TGCAAG
TT-------------------------TTTTATCTC----------------------------TACAAATTTATTA---
-TACCTAAGATTCCAATCTATGGTGCCTACTTGGCTATAAATGGCATCGTATGTGCACCAGCAAGTCTTCACATCTC---
--ACCCTGCATCTCCATCTCCC---TTATTAGTCTTGGTTG-TGTGTCCACAACACAATGGCTCCGCGTTCAGGTGCTTT
CTTTCTCCAAGCGGCCGCCGTCGCTGCTGTTCTCGCCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCATGGCTCTCCAT
CGCCAGCACCGCCACCGACAACCTCCACA--------------------CCACCACCTCTGGCGCCGTTGCCACCAAGTC
CGGCGCTGGCGCCGGGACC---GTCATGCAACGACTGTTATTCGCAGTGCTACTTCTCCTGCGACGCCTCCATTTCCTCA
ACGTGCAGCGTATACTGCAACGTTGAAGGTGCCTGCAACTCCTGCAGGGCTAATACCATCAAGGAATGCAGGGCCAGCAA
AAACTGCGCCGGCAGCTGCGACGAGTGCAACGACCCAACCAACTCTTCATGCGCTTTAGCGTGCAGCACCCAATACTGCG
ACAGGTGTCGTTACTGGGAGATCCAGAAGTGCCAGAAAAAGTGCCGCCAGGAGTGCTCCGCACCCAAATGCGTACCTTAG
AGGCCTGTAAACTAGCTATAGCAT------GTGCGTCGCATGGTCAACGCATCTTCTTGTGATGCATCTATGTGCACATT
TGTGTATG------------------------------------------------------------------------
-----------AGATGCTATGACATCGAATAATATGGGAAGTTGTACGTTTT-----------------------TATCA
TGAATACTTAGCTATGTGCTGCACGCTTTCCTCTTGTATTCCACTCTAGAATAAACCATGCCCTCAAGCTGACTAGATCA
GATGAGGATGGAGATTGACGGCGAATAAAGAGGTCAAACCCGAACAAAATCAATGCCAGAAATGAGGAGAGGACAAAGGA
TGCAGACCCGGACAGATTTGGCCTGCGAAGACGACCTTGCTGCCGAGGAAGACAAAGACAAGCTGTTGCTACCATGGGGA
TACGAGAGAAGCTCGCCAAAGGAGCACATGAACAAACGAGACAAGAAGGAACGGGCTACCACTACATCTAGATAAAGATC
GACGATGACGCCAGCAGGAGTGGAGATTGCTCCTCCCTGGACCAATGCAGCAACGACGGACAGTTGCGGCGCCAGGAGAG
AACCTGGCACGAGGATACTATCTCGTAATATTTTGCCTCA-------AATATTTTGCATATTCCTTTTTCAAAAGTCAAC
TTAACGTCGAAAGGATCGAGATCGCCACTTTCATAATCAACAATAAGATCTTCCATGCATTCAAATGACCTGTACATAGT
AAAAAAAGAAGTCAAAAATGCTTGGATAATATGTCGATTTGGAGCAGCATATCTACAGCATTGCTAGCACTTGGCACATA
-----------------------------------------------------------------ATTCCCTTAGTGAGC
CAGAATTTATTTAGTTCATGGCTGCCTATATACTGTAGATTCTGCTTGCAAAGATTTGATCACTGTGACTTCAAACATTT
TACTGGTGAATTACGCCATTGAACTTTGATGTTTCACAAGAAACAAATACAAGCAACTTTTGGTAGAAGTGTCAAAGAAC
TTTACTCTTTACCACCACTCCGTTCCTTCTGCGCTACCTCAAACTTCCCAAACCAAGGGAAGAT
>chr1B_2
-TATCAATGATCCAATGACTGTGATCAAGCTAATGTGCCATTGGATTACCGGGTGGTCCATGTTGCAGATAAAGGAGGCG
GCTTAGAGGATGCTGACGTAGGGGGCAACAAGGTTCCTCGTACAAGGATATCTACCATTCCAATTAATATAGGAGTACTA
TATCTTTGAAGGCTATTAATTA---GATGATTTGCATGGTTTCACAAATGAAGGACGAACTAAAA----GTGTTGTGGGT
TGAAGTCCATTGACTCAATGAATTTAACAATGGAAGAGGTTTAAATGGATGGAGAAAACTTCATGTCCAACCAAGGATAA
AAGAAG-TTTCGTCATAATTATGAAGGACAACCATTTTTATT-TCAAATTACAAAAATGTATTAAATACAACCAAAAAGC
ATAAG--CACGCGCATACAAGTGGTTAGTCAGGAACTATAATAAAAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTATTTTAGCTGCAAAGGAAAATACCTACCATCTATTAG-TT
TTTGTA--------------------------------------------------TCAAAATTGCTAGCGTGTGC----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CAATAAGGAGGAACAAACCG-CATGGTCCTGATGTTGATTTACCTTATTCCCATCACAGTAACCT---------------
--------------TGGCGGCCACAACGAAA--TTTTCTTTGGCCATCTAATTAACCTGTCTCCCTTTCGGAATGTTTGA
CCACTAAAGTTTAGTTCTTCCTACTAATCAAAAAGTGAAGTGTCCAAATTCTACATTTCAATATC---------------
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--------------------------------------------------------------TTCCAAAACAA-GGCAAT
--TGTCAGGACTCTAGTATAATTCAGTTTTCTCTCCTCCACTAAGACTATCCAACCCAAATTGCCCGGTCAAGATGAGTA
ACTAATAA--------TACTAATATGTGAAGTCAAACTTGTAGCATGGACGGCGCAGATCTCAACT--------TGCAAC
TTGGTACAGTTTACATAGCTGGAGTTTTAATTCGTC----------------------------CACTAATTTGCTA---
-TACCTAAGATTCCAATCTTGGGTGCCTACTAGGCTATAAATGCCATCGTATGTGCACCAGCAAGTCTTTACATCCC---
--ATCCTGCATCTCCCTCTCCC---TTA---GTCTTGGTTGCTGTGTCCACAACACAATGGCTCCACGTTCAGGTGCTCT
CTTTGTCAAAGCGGCCGCTGTCGCTGCTGTTCTCGCCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCATGGCTCTCCAT
CACCAGCGCCGCCACCGATAACCTCCACA--------------------CCAGCACCTCCGGCGCCGTTGCCACCAACTC
CGGCGCCGGCGCCAGGACCGATGTCATGCAATGACTGTTATTCGCAGTGCTACTTGTCCTGCGACGCCTCCATTCCCTCG
CAGTGCAGCCTATACTGCGACCGTGAAGATTCCTGCAACTCCTGCAAGACCGGGGCCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGACAGCTGCGACGAGTGCAACGACGCTCCCAACTTTAAATGTGCCTTCTCCTGCACCACCCGAAACTGCA
TCGGGTGTCATTACGGGGCAGGCCAGATGTGCAATAAAGCGTGCAGAGAGGAGTGCTCCGCACCCAAATGTGTACCCTAG
ATGCCTGAAAACTAGCTATAGCAT------GTGCGTCGCATGGTCAACGCGTCTTCTCATGATGCTTTTATGTGCACA-T
CGTGTATTACTCCCTCTGTACCGAAATAGTTGTCGTTGGAGTAGCTGAAGTTCAGCTACTCCAGTGACAACTATTTTGGT
ACAGAGGGAGTAGATGCTATGGCATCGAATAACATGGGAAGTTGTACGTTTTTATCTGGAAGGAAAATCGTTGAGTATCA
TGAATACTTAGCTATGTACTGGACGCTTTCCTCTTGTATTCCACTCTAGAATAAA-------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_118
--------------------------------------------------------------------------------
----------------------------------------TACAAGGATATCTACCACTCCATTAAAAATAGGAGTATGA
TATCTTTGATGGTTATTAATTACTAGATGACTTGGATGCTTTCACAAATGAAAGAGTAACTAAAA----ATTTTGTGGAT
TGAAGTCCATGGACTCGATGAATTTAACAATGGAAGAGGTTCAAATGGATGGAGAAAACTCCGTGTCCAACCAAGGATAA
AAGAAG-TTTCATCATAATTATTAAGGACAAACATTTTTTATCTCAAATTACACCAAAATATTAAACACAACCGAAAAGC
ATAAGCACACGCGCACACAAGTGGTTATTCAGGAACTATACTAAAAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTATTTTAGCTGCAAA-AAATA--CATGCCATATATTAG-TT
TGTGTA--------------------------------------------------CCAAAATTGCTAGCGTTTGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
AAATAAGGAGGAACAAGTTGCCATGGTCCTGAACTTGATTTAACCTATTCCCATCACAGTAGCCT---------------
--------------TGGCGGCCACAACCACA--TTT--TTTCGGCATCTAATTAACCTTTCTCTCTTTCGTAACGTTTCA
CCACTAAAGTGTAGTTCTTCGTAGTAAT--AAAAGTAAAGTGTCTAAAATCTACATTTCAATATCGGAAACATTTCCTGA
CGGACGACCGGCAGAGCGCTCGGCCGGTCGCCCCTCGCTCGCTTGCCTTTTTACACGGAAGCGACTGGGCCAGGTGCGTC
CGTGGACCTCAAACGAGATATCCCTTTTCTCATCTCTTCTGCACAACTTCTTTTTTTTTCTCTTCTCTTCTTCTTCCTCT
TACCTTGTTGCTTCTTTCCTCTCTTCTTACGCAACCCAGCCATCCCTTGCTCCTTTTATCATTGCAGCAACCATTCATGT
CCATAGCGACAATGACAATTTTTGCTTCAACCGTCATCGGTCTTTGCTACAACCGGCGATGGCAATTGCTACAACCATTC
ATGTCGATGTCGTGACCTGCGACCCACGAAGACAACGACGACGATTTTGCTTCAACATTTGTCAGTTTTTGTTACGACCG
GCGATGATAATTGCTACAACTATTCACGTTGATGATGCGACACGCGATGGCGGCAACAATGATTTTGCTTCAACCTTCGT
CAACTTTTGCTACAACCAATGACGAGAATTGTTACAACCATTGACGTTGATAATGCGATCCACAACGGAGGTGCCGACAT
CTTTGTTGCAACCATCATCGGATTTTTGCTACAACCTGCGAAGGAAATTGCTACAACCGGCAAGGCCGGGAGCTGCAGCC
GGCGCAGGCATGGGGGGAGGATGTTGCGACCGTCGCCGGTCGTTGATGCGACGCCGCGATGGGAGAGGAGGGAGAACGGA
GGCCGGGCGGGTCTGCTACAACTGGGGCATGGCGACGCTACAAACAAGGCACCACGAAACAACGATGAGCGGGCCTCGCC
ATGGCCTGAAAACAGACGGCGGAGGAGGCTGTGACGGGGAGCTGCGACGAGGAGCGGCGGTGCGAGGAGAGCAAGCGGTG
GTGTTGCTGCCTCCATCGGAGCGCGCACAGACTCGATGGACAGAGGCACGAAGCGCGTGTTGCTCGCGAGGGGATTTTTT
GGCGTTGACTAACGAGGGAAAGAAGACGATGTGGGGAACCGTAGCGATCCAGCGGCTGTCGACGGCCAGATCGGAAGGTT
GTGGGCCGACTGGCCCAAATTTGGGCCGGCGCGCCGGCGCCTAGCACCCGCCTTTCAATATCTTCCAAAACAAGGGCAGA
--TGTCAGGACTCTGGTACAACTCAGTTTTTTCTCCTCCACTTAGACTGTCGAACCCAAATTGACCGGTCAAGATGAGTA
ACTAATAA--------TACTAATATGTGAAGTCAAACTTGTAACATGCATGGCGCAGATCTCAACT--------TGCAAC
TTGGTACAGTTAACCTAGTTGCAAATTTTTTATCTC----------------------------TACTAATTTGCTA---
-CACCTAAGATTCCAATCTTGGGTGCCTACTAGGCTATAAATGGCATCGTGTGTGCACCAGCAAGTCTTCACATCTAATC
TAATCCTCCATCTCCATCTCCC---TTA---GTCTTGGTTGCTGTGTCCGCAACACAATGGCTCCGCGTTCAGGTGCTCT
TGCTCTCAAGGCGGCTGCCGTTGCTGCCGTTCTTGCCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCGTCGCTCTCCGT
CGCCAGCACCGCCACCGCCAACCCCCACA--------------------TCACCACCTCCGGCAACGTTGCCACCAACTC
CGGCGCCGTCACCGGGACCGATGTCATGCAACGACTGTTATTCGCAGTGCTACTTGTCCTGTGACGCCTCCATTCCCTCG
GAGTGCAGCAGATACTGTGATGTCCCAGGTTCCTGCAACCCCTGCAAGACCACGGCCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGGCAGCTGCGACGAGTGCAACGACGCTCCCAACTTCAAATGTGCCTTCGCTTGCACCACCCGAAACTGCA
ATGGGTGTCATTATGCGGGAACCCAGATGTGCCAGAAAACGTGCAGCGAGGAGTGTTCCGCGCCCAAATGCGTACCCTAG
AGGCCTGGAAACTAGCTAAAGGAT------GTGTGTCGCATGGTGAACGCGTCTTCTTGTGATGCATCTATGTGCACG-T
TGTGTATG------------------------------------------------------------------------
-----------AGATGCTATGACATCGAATAATATGGGAAGTAGTACGTTTTTATC------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1B_153
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TACAA
TATCTTTGATGATTATTAATTA---GATGACTTCCGTGCATTCACAAATGAAAGACGAACTAAAA----GTTTTCTGGAT
TGAAGTCCATGGACTCGATGAATTTAACAATGGAAGAGGTTT-----GATGGAGAAAACTCCATGTCGAACCAAGGATAA
AAGTGGTTTTCATCATAATTATTAAGGACAACCATTTTTATT-TCAAATTACACAAAAATATTAAACACAACCGAAAAGC
ATAAG--CACGCGCAAACAAGTGGTTATTCAGGAACTATACTAAAAC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTATTTTAGCTACAAAGAAAAATACATACCATATATTAG-TT
TTTGCACAAAGTTCCTTTGTAGCTCATCCTACATGGAACCTCTTATCTTCAACCCTTCAACATTGCTTTGAGATCCGTAC
TCTCAAACTAACTTGCAACAAGCAGATTTCTCTTTTTTGTTTCTCTCAAATAAAAGAACATATGGAAAAAACTTTGCAGA
TCAAACAAATTTTACAACTTCAATGTGTGAAAAACTTTCAGATTTTTTGGACCAACATAAATATACAAAATGAGGATTTT
TTGATTAAGAAAAATAGATTTTAGCATTTTAAATGCATGAAAAAATCTGAATTTTTTTCCCACGTAGTAATTAGAATGCT
TTGTTGTCTTGCAAAGTTTGAAGTTTATACATTGTTTCATTTGAGAGAAAACAAAATGACAAATATGCCTGCACAAATCT
TGATGCCAAAATGGATGGCTAAGATAAGGGGTACCGTGTAGCTCAAGCTACACAAAACCACACTCTTAGTTTTTGTAGCA
AAATATGGTGGAACAAATCG-CATGGTCCTGATGTTGATTTACCTTATTGCCATCACAGTAACCT---------------
--------------TGGCAGCCACAACCACAG-TTT--TTTGGGCATCTAATTAACCTTTCTCTCTTTTGGAATGTTTCA
CCAATAAAGTTTAGTTCTTCCTACTAAT--GAAAGTAAAGTGTCCAAAATCTACATT-----ATC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TTCCAAAACAA-GGCAGT
TGTGTCAGGACTCCCGTATAATTCAATTTTCTCACCTCTACTTAAACTATCAAACCCAAAGTGCCCGGTCAAGATGAATA
ACTAATAA--------TACTAATATGTGAAGTCAAACTTGTCACATGCATGGCGCAGATCTCAACT--------TGCAAC
TT------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_398
--------------------------------------------------------------------------------
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-------CACGCGCACACAAGTGGTTATTCAGGAACTATACTAAAAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTATTTTAGCTGCAATGAAAAATACATACGATATATTTG-TT
TCTGTA--------------------------------------------------TCTATATTGCTAGCGTGTGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAATAAGGAGGAACAAGTTGCCATGAACCGGAAGTTGATTTACCCTATTCCTATGACAGTAACCT---------------
--------------AGGCGGCCACAACCACAGTTTT--TTTGGGCATCTAATTAACCTTTGTCTCTTTCGGAATGTTTCA
CCAGTAAAGTTTAGTTCTTCCTACTAAT--CAAAGTAAAGTGTCCAAAATCTACATTTCAATATC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TACCAAAACAA-GGCAGT
--TGTCAGGACTCTCGTATAGTTCAGTTTTCTCTCCTCCACTTAGACTATCGAACCCAAATTGCCCGGTTAAGATGAGTA
ACTAATAA--------TACTAATATGTGAAGTCAACCTTGTAACATGCATGGCGCAGATCTCAACTGTTCAACTTGCAAC
TTGGTATAATTTACCAAGCTGGAAACATAACGCATCTGTATATAGTTCAATAATAACATAGTGGCACTAATCTGCACTCC
CTAATTAAATTTGCAATTCTGGGTGCCTATAAATAGCCTCG----ATGGTATGTCCACCAGCAAGTGTTCACATCTC---
--ATCCTGCATCTCCATCTCCATTATTA---GTCTTGGTTGCTGTGTCCACAACACAATGGCTCCGCGTTCAGGTGCTCT
TGCTCTCAAGGCGGCCGCCGTTGCTGCCGTTCTGGCCATGCTGGTAGTGCCTTCCTTGGGGCGCTGTCATGGCTCTCCCT
CGCCAGCACTGCCACCGACAACCTCCACA--------------------CCACCACCTCCGGCGCCGTTGCCACCAACTC
TGGCGCCGGCGCCAGGACAGATATCATGCAATGACTGTTATTCGCAGTGCTACTTGTCCTGCGACGCCTCCATTCCCTTG
CAGTGCAGCCTATACTGCGACCGTGAAGATTCCTGCAACTCCTGCAAGACCGGGGCCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGACAGCTGCGACGAGTGCAACGACGCTCCCAACTTTAAATGTGCCTTCTCCTGCACCACCCGAAACTGCA
TCGGGTGTCATTACGGGGCGGGCCAGATGTGCAATAAAGCGTGCAGAGAGGAGTGCTCCGCACCCAAATGCGTACCCTAG
AGGCCTGGAAACTAGCTAAAGCAT------GTGCGTCGCATGGTCAATGCGTCTTCCTGTGATGCATCTATGTGCACA-T
TGTGTATG------------------------------------------------------------------------
-----------AGATGCTATGACATCGAATAATATGGGAAGTTGTATGTTTTTATCTGGAAGAAAAATCGTTGAGTATCA
TGAATGCTTAGCTATGTACTGCACGCTTTCCTCTTGTATTCCACTCTAGAATAAA-------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_398
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CACGCGCACACAAGTGGTTATTCAGGAACTATACTAAAATGTATTTTAGCTGCAACGAAAAATAGGCCTCGTC
TGTCGCCCACGGGAGCGGCAGAGGAGAGCGATCCAGTTTTTTCAGGGAGGGAGCGTCGATCCTAAACTCTACCAACCTGA
CGCGCACACAAGTGGTTATTCAGGAACTATACTAAAATGTATTTTAGCTGCAACGAAAAATATATACGATTAATACTATT
TTTGTA--------------------------------------------------TCAAAATTGCTAGCGTGTGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
AAATAAGGAGGAACAAGTTGCCATGGTCCGGAAGTTGATTTACCCTATTCCCATCACAGTAACCTAGGCGGCCACATCTC
TCTCAAAAAAAAAAAGGCGGCCACAACCACAG-TTT--TTTGGGCATCTAATTAACCTTTCTCTCTCTCGGAATGTTTCA
CCAGTAAAGTTTAGTTCTTACTGCTAAT--CAAAGTAAAGTGTCCAAAATCTACATTTCAATATC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TACCAAAACAA-GGCAGT
--TGTCAGGACTCTCGTATAATTCAGTTTTCTCTCCTCCACTTAGACTATCGAACCCAAATTGCCCGGTCAAGATGAGTA
ACTAATAAAGTAATAATACGAATATGTGAAGTCAAACGTGTAACATGGACGGCGCAGATCTCAACT--------TGCAAT
TTGGTACAGTTTACATAGCTGCAATTTTAATTCGTC----------------------------GACTAATTTGCTA---
-TACCTAAGATTCCAATCTTGGGTGCCTACTAGGCTATAAATGGCATCGTATGTGCACCAGCAAGTCTTCACATCCC---
--ATCCTGCTTCTCCCTCTCCC---TTA---GTCTTGGTTGCTGTGTCCACAACACAATGGCTCCACATTCAGGTGCTCT
CTTTCTCAAAGCGGCCGCCGTCGCTGCTGTTCTCACCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCATGGCTCTCCGT
CGCCAGCACCGCCACCGACAACCTCCACA--------------------CCACCACCTCCGGCGCCGTTGCCACCCACTC
CGGCGCCAGCGTCGGGACTGATATCATGCAACGACTGTTATTCACAGTGCTACTTTTCCTGCGACGCCTCCATTCCCTCG
AAGTGCAGCGCATTATGCAACGTCGAAGTTCCCTGCAACTCCTGCAAGACCAGCGCCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGACAGCTGCGACGAGTGCAACGACGCTCCCAACTTTAAATGTGCCTTCTCCTGCACCACCCGAAACTGCA
TCGGGTGTCATTACGGGATGGGCCAGATGTGCAATAAAGCATGCAGAGAGGAGTGCTCCGCACCCAAATGCGTACCCTAG
AGGCCTGGAAACTAGCTAAAGCAAGTAGGAGTACGTCGCATGGTCAACGCGTCTTCTTGTGATGCATCTATGTGCACA-T
TGTGTATG------------------------------------------------------------------------
-----------AGATGCTATGACATCGAATAATATGGGAAGTTGTATGTTTTTATCTGGAAGAAAAATCGTTGAGTATCA
TGAATGCTTAGCTATGTACTGCACGCTTTCCTCTTGTATTCCACTCTAAAATAAA-------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr1D_759
--------------------------------------------------------------------------------
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-----------------------------------------------------ACCCAAATTGCCCGGTCAAGATGTGTA
ACTAATAA--------TACTGATATGTGAAGTCAAACTTGTAACATGCATGGCGCAGATCTCAACT--------TGCAAC
TTGGTACAGTTTACCTAGTTGCAATTG-TTTATCTC----------------------------TACTAATTTGCTA---
-CACCTAAGATTCCAATCTTGGGTGCCTACTAGGCTATAAATGACATCGTATGTGCACCAGCAAGTCTTCACATCTAATC
TAATCCTGCATCTCCATCTCCC---TTA---GTCTTGGTTGCTGTGTCCACAACACAATGGCTCCGCGTTCAGGTGCTCT
TGCTCTCAAGGCGGCCGCCGTTGCTGCCGTTCTTGCCATGCTGGTCGTGCCTTCCTTGGGGCGCTGTCGTGGCTCTCCGT
CGCCAGCACCGCCACCGCCAACCCCACATCACCACCTCCGGCGACGTTGCCACCACCTCCGGCGCCGTTGCCACCAACTC
CGGCGCCGTCACCAGGACCGATGTCATGCAACGACTGTTATTCGCAGTGCTACTTGTCCTGTGACGCCTCCATTCCCTCG
GAGTGCAGCAGATACTGTGACGTCCCAGGTTCCTGCAACCCCTGCAAGACCACGGCCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGGCAGCTGCGACGAGTGCAACGATGCTCCCAACTTCAAATGTGCCTTCGCTTGCACCACCCGAAACTGCA
ATGGGTGTCATTATGCAGGAAGCCAGATGTGCCAGAAAACGTGCAGCGAGGAGTGCTCCGCGCCCAAATGCGTACCCTAG
AGGCCTGGAAACTAGCTAAAGCAT------GTGCGTCGCATGGTCAACGCGTCTTCTTGTGATGCATCTATGTGCACG-T
TGTGTATG------------------------------------------------------------------------
-----------AGATGCTATGACATCGAATAATATGGGAAGTA-------------------------------------
--------------------GCACGCTTTCCTCTTGTATTCCACTCTAGAACAAA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr1B_907
CTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------TAAATAACATCGTATGTGCACCAGCAAGTCTTCACATCTAATC
TAATCCTGCATCTCCATCTCCC---TTA---GTCTTGGTTGCTGTGTCCACAACACAATGGCTCCGCGTTCAGGTGCTCT
TGCTCTCAAGGCGGCCGCCATGGTTGCCATTCTCGCCATGCTGGTCGTGCCTTCCTTAGGGCGCTGTCATGGCTCTCCGT
CGCCAGCATCGCCACCACCAACCCCCATA--------------------TCACCACCTCCGGCGCCGTTGCCACCAACTC
CGGCACCGGCACCGGGACCAATATTATGCAACGACTGTTATTCGCAGTGCTACTTGTCCTGTGACGCCTCCATTCCCTCG
GAGTGCAGCAAATACTGTGACGTCCCATGTTCCTACAACCCCTGCAAGACCACGACCATCGAGGAATGCAGGACCAGCAA
AAACTGCACCGGCAGCTGCGATGAGTGCAACGACGCACCCAACTTTTCATGTGCCTTTTCTTGCACCACCCGACACTGCA
ACGGGTGTCATTACGCGGGGACCCAGATGTGCAAGGAAACATGCAGCAAGGAGTG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr1D_1661
--------------------------------------------------------------------------------
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----------------------------------------------------AAACCATGCCTCCAAGTCGACCAGATCA
GACGAGGATGGAGATTGACAGCG-ATAATGAGCTCAAGTCCGAACAAAATCAATGCCAGAAATGAGGAGAGGACAAAGGA
TACACACCCGGACAGTTT-GGCCCGCGAAGACGACCTTGCTGTCGAGGAAGACGAAGACAAGCTGCTGCTACCATAGGGA
TACGAGAGAAGCTCGCCAAAGGAACGCATGGCCACATGAGACAAGAAGGAACGAGCTACCACTACATCTAGATAAAGAT-
--CGATGCCGCCACCAGGAGTGGAGATTGCTCCTCCCTGGACCAATGCAGCAGCGACGGAGAGTGGTGGCGCCAGGAGAG
AACCTGGCACAAGGATGCTACCTCGTAAGGAAGCAATAATTACCTCTAATATTTTGCATATTCCTTTTTCAAAAGCCAAC
TTAACGTCGACAGGATCAAGATCGCCACTTTCATAATCAACAATAAGATCTTCCATGCATTCAAATGGCCTGTACATAGT
AAAAAAAT--GTCAAAAATTCTTGGATATAATGTCGATTTGTAT----ATATCTACAGCATTGTTAGCACTTGGCACATA
-----------------------------------------------------------------ATTCCTTGGC-GAGC
CAGAATTTATTTAGTTCATGT---CCTATATACTGTAGATTCTGATTGCATAGATTTGATCATTGTGACTTCAAACATTC
TACTGGTGAATTATGCCATTGACCTTTGATGCTTCACAAGAAACAGATACGAGCAACTTTTGGTAGAAGTGTCAAAGAAC
TTTACTTGTTAACACCACTCTGTTCCTTCTGCGCTACCTCAAACTTCCCAAACCAAGGGAAGAT
>chr1A_1661
--------------------------------------------------------------------------------
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----------------------------------------------------AAACCATGCCTCCAAGTCGACCAGATCA
GACGAGGATGGAGATTGACAACG-ATAATGAGCTCAAGTCCGAACAAAATCAATGCCAGAAATGAGGAGAGGACAAAGGA
TACACACCCGGACAGTTT-GGCCCGCGAAGACGACCTTGCTGTCGAGGAAGACGAAGACAAGCTGCTGCTACCATAGGGA
TACGAGAGAAGCTCGCCAAAGGAACACATGGCCACATGAGACAATAAGGAACGAGCTACCACTACATCTAGATAAAGAT-
--CGATGCCGCCACCAGGAGTGGAGATTGCTCCTCCCTGGACCAATGCAGCAGCGACGGAGAGTGGTGGCGCCAGGAGAG
AACCTGGCACAAGGATACTACCTCATAAGGAAGCAATAATTACCTCTAATATTTTGCATATTCCTTTTTCAAAAGCCAAC
TTAACGTTGAGAGGATCAAGATCGCCACTTTCATAATCAACAATAAGATCTTCCATGCATTCAAATGACCTGTACATAGT
AAAAAATT--GTCAAAAATTCTTGGATATAATGTCGATTTGTAG----ATATCTACAGCATTGTTAGCACTTGGCACATA
CTCCCTCCGTTTCAAAATAGAAGTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAATTCCTTGGC-GAGC
CAGAATTTATTTAGTTCATGT---CCTATATACTGTAGATTCTGATTGCATAGATTTGATCATTGTGACTTCAAACATTC
TACTGGTGAATTACGCCATTGACCTTTGATGCTTCACAAGAAACAGATACGAGCAACTTTTGGTAGAAGTGTCAAAGAAC
TTTACTTGTTAACACCACTCTGTTCCTTCTGCGCTACCTCAAACTTCCCAAACCAAGGGAACAT
>SNPs
S-------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------------SSSSSS-----------
------------S------------------------S------------------------------------------
-------S------------------------------------------------------------------------
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------S------------------------S------------------------S-----------------------
----------------------------S------------------------------------SS-------------
----------------S--------------------------S------------------------------------
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------------S---------------------S---------------------------------------------
------S---------------------------------------------------------S--------------S
-------------------------------------------------------------------S-----SS-----
-------------------SS----------S------------------------------------------------
---S------------------------SSS-----------------------------------------------S-
-------S------------------------------------------------------------------------
-----------------------------------------------------------S-----------------S--
------S------------------------------------------------S------------------S----S
-S----------------------------S---------------S-S-S-SS------S-----------S-------
-------S--------------------------S--S------S------S--S--S--S----S-----S-S-----S
--S------S----S---S--S-----S-----------S----S--S----------------------------S---
-------S------------------------------------------S---------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------SS----SS---S------
--S----------------S---S----S---S----SS-----------------------------------------
-S--S----------S--S----S------------------S----------S-----------S---------S----
-----------------------S------SS--S-S----------------S-------------------------S
SS-----S-----S--------------------------------------S-------S---S-S-------------
----------S---------S-------SSSSSSSSSSSS-----------------------------------S----
----------S------S--------------------------------------------------------------
-------SSS---------S--------SS-----------S--SSSS---------------S----------------
----------------------------------------------------------------------S-SSSS----
--------------------SSSS--------------------S-----S-----------S----------------S
----------------------S--------S-------------S----S-----------------------------
------SS---S--------S-------------------------------------------
>forward_253
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TGTGGGT
TGAAGTCCATGGG-------------------------------------------------------------------
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>reverse_3235
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----------------------------------CCAACCAACTCTTCATGCGC--------------------------
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>forward_3122
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--------------------------------------------------------------GACGCCTCCATTTCCTCA
AC------------------------------------------------------------------------------
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----------------------------------------------------------------
>reverse_4492
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-----------CCACCACTCCGTTCCTTCTG---------------------------------
