>input_sequence_78797
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---------------------------------------------------------------------ATGGCGAGTTC
TCCTTCTTC---------CTTGCTACACGGAGTTGCGATCCTTGCTCTCATATGCTGCTCCTTGTCATGCTCGGCGGCGG
CCGGAGGTAATTCATCTACTAAA-------CTCGCAGCACCATGGATGCATCTTCTAGGTTATTCATGTGAGTGGTAATG
ATGGATGGTTCATTATCATGCATGCATGCAGATGTAGTTGCTCTCGACGGACGTCGTAATCACTGGAAACCTCCGCCGAC
TCCGTTGCCAGGGAAGCAGCCCACTCCGGTCCCAACTCCGCCGACTCCGGTGCCAGGGAGACCGGCGACTCCATGTCCTC
CAGTCTCTGTTCCTCCGCCACCGCCAACGCCCGTGGGCAGATACCCGGTGACCCCAACTCCTTCTACCCCTATTTGTGGG
CCGCCGCCGCCCCCGGTGCAGCGGGAGGTGTCGGCACTTTCGCCGCACCGCAAGACCCTACAGAAGGCTGTTAAGAACGT
GCTTTAA-------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G011800
ATGCCTGACCTAGTCGAAGGCTTGATCAAGCTTTTCATCATAAGACCATGTATACTTGTTTTTCGAAACCAATGCTACCA
AGAACATGTCCAGTAGATGGAGCCTTCTCACTTGCCAGATCCATGCACGGAGAGAGCAAAAGGCCCGCCCACACTGCAAG
TGAAAACACCAGAAGTAGGTTCTTGGCCTCGCTGCTCCGCAGTAAGACACTGTCGTGCCAGCTTTGATCCTCATTACGGG
GAGGATGGGGGAGGGGAGGGGTGCGTTTGGCGAGGGAATCGTTGGTCCAGTTTTCTCATACTCCCTCCGTTTCAAATTAC
TCGTCGTAGTTTTAATTTAAATTACTCGCCGTGGTTTAGTTCAAATTATTTGTCGTGGTTTTAGAAGAAGGATGTGGGTG
GCAAAAGGTAGACGATACGAGCAAACCGGTCTTGTCCCTCATGTGTCTCAACCTCTTACCCTCCACCCCGCCTACCTTGG
TGGTTCCACCCGCAA-----------------------AGAGCGGCTGCTAGCTAGATAGGGAGAGGGTTGAATGGAGAG
GAACAATGAGAATATAAGACGAAAACAATATTTCTTTCTTTTTCTTGGAAAAAAAAATCTCTTCTAAGCTAGAAAATCCA
ATTTTTTTTTGTTTTTGTGGTACTTCACCGTGGTGCCGACAAGCTAGAAAATTTGTTTCTGTGCTGCTTTAATGTGGTGC
CGACAAGCTGTATAGTATTGACTCCATTGGTCTATACAAGACGAAAGAGGAAGATTTTTCTAATCGAGCTTGCCACTAAT
TCGTTTTTTTCTCAAGCTGAATTTCCCAAGGTGCCCCTGTTGACAGGAGGGCGGACCATGACCATTCCATCAGAGCGCGT
CTGCACTAGCCTCTAAGACA------AATATGTAGCCTGGCAATTCTCAGTGTAGTAGCGTAGTAGCTAGTACCGCTGTG
ATCCCTATAAAACAGTGCATGCACTGAGAGAAAATAATCAGAAGCCTGTGACAGGAAGGGGGGAGGATCATGGCGAGTTC
TCCTTCTTC---------CTTGCTACACGGAGTTGCGATCCTTGCTCTCATATGCTGCTCCTTGTCATGCTCGGCGGCGG
CCGGAGGTAATTCATCTACTAAA-------CTCGCAGCACCATGGATGCATCTTCTAGGTTATTCATGTGAGTGGTAATG
ATGGATGGTTCATTATCATGCATGCATGCAGATGTAGTTGCTCTCGACGGACGTCGTAATCACTGGAAACCTCCGCCGAC
TCCGTTGCCAGGGAAGCAGCCCACTCCGGTCCCAACTCCGCCGACTCCGGTGCCAGGGAGACCGGCGACTCCATGTCCTC
CAGTCTCTGTTCCTCCGCCACCGCCAACGCCCGTGGGCAGATACCCGGTGACCCCAACTCCTTCTACCCCTATTTGTGGG
CCGCCGCCGCCCCCGGTGCAGCGGGAGGTGTCGGCACTTTCGCCGCACCGCAAGACCCTACAGAAGGCTGTTAAGAACGT
GCTTTAATTAAGAAAGCACCAAATGCTACCGCTCCGACATATTTTCTATGTTATAGTACAAGAGGATTGTGTTGCTAATT
AATTAAGGTAATAGATAATATGATATCAGTGTAGTACTCCCTCCGTTTCATAATATAAGATGTTTTGACACTAGTATAGT
GTAAAAAACGTTCTTATATTAGGGGACCAAGGGATTAGTATTTACATACAGATTTTGTTTGGTGTACTGGTCATGAGTCA
TCTGAAGCTTCATTTCGCCAGCCCATGCAGCGCTGTGCATGCATGGCGACTATTCGTTTCTTCTATTTTCTCGAACATTA
TGTTTTCATGCAGAGAGAGAGTGAGAGAGAGAGGAGATTGGAGAGACACACACTGAGCGAGAGAAAGAGACAAGATTATA
TGAAAGGGGATGTCTCTAATAGAAGGACAAGGACTAACAAATTACTCAGACTATCCATACTGGAAGTAATACATATGGTA
ACATCACACTTATCTAGACAAAATAGATGACATGAAAAGTAATTAAGGATGAAACAGAGACATGTAGTAAAATAGTTAGT
TATTTATACTATGAGTAACATCACACATATCAAGACAAGATAAGTCTACAACTTAATAAATGAAGGGTTACATGGCACCA
CAGATATGTTACTCACCACTATAGAGATAGTAATATAGATTAGTAACATTTGCACCTCATTATGAGTATTCTCAAGTGAG
AACCGGTGTTCTACAACATCTTTGAAAAAGTACACACGGGAAGGTCGGACCGTACATTAACACCACTTCTAAAAGGGGAT
TACGATGTTACATTTGCACTTTATAAACACCACGAAGTCAACATGTTTAAGACATAAATCTCCAATAAGGATGCTTCGTT
CATCCTCGGTAGCGTGTATGCCATGCTGAGGTTGACGCCGTCGCCAAGTTGCCGTGATGGGGCAAAATTGACAAATTTGA
CCTATGGACAAAATCAAATCACAGAATGAACTGCTCGTGAAACTATT
>chr3A_424
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-----------------------AACTGGTCTTGTCCCTCATGTGTCTCAACCTCCTACCCTCCACCTCGCCTTCCTTGG
TGGTGCCACCGTCGGAGGGTAGGTCCCTGGCCTATGCCAGAGCGGCTGCTAGCTAGATAGAGAGAGGCTTGAATGGATAG
GAACCATGAGAATGTATGACAAAAAACA------TTTCCTTTTTTCAGAAAAAAAAACATTTCTT---------------
-TTTTCTTTTGTTTTTGTGGTGCTTTACGATGGCGCAGACAAGCTAGAAAATTTGTTTCTGTGCTGCTTTAATGTGGTGC
CGACAAGCTGTATAGTGTTGACTCCTTTGGTCTATACAAGACGAAAGAGGAAGATTTTTCCAATCAAGCTTGCCACTAAT
TCGTTTTT-TCTCAGGCTGAATTTCCCAAGGTGCCCCTGTTGACAGGAGAGCATAAGTTGACCAGTACACCAGAGCGCGT
CTACACGACGAGTCTCCAAGACCAAGAATGTATGGCCTAGCAATCGTCGGTGTAGTAGCGTAGTAGCACCGA----TGTG
ATCCCTATAAAACAATGCATGCACTAAGTGAAAATAATCGGACGGGAAGGA---------------ATCATGGCGCGTTC
TACTTCTCCTTCTCCTTGCTTGCTATGCAGAGTTGCGATCCTTGCTCTCATATGCTGCTCCTTGTCATGCTTGGCTGCGT
CTGGAGGTAATTAATTCATTCACTAAACCTCTCGCAGCTCCAT-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---S----------------------------S-----------S-----S------
----S-----SS-SS---------------------------------------------S------S---------S--
----S--------S--S---S----SS-SSSSSS----S----S-SS----------SS-S-SS-SSSSSSSSSSSSSSS
S----S---------------S---S--SS---S--S-------------------------------------------
----------------S--------S----------------------------------S----S--------------
--------S-----S----------------------------------S--SS-SSS------S-S--S----------
--S---S-SSSSSSSSS-SS---------S-S-S----S-----SS--S------------------SSSS-SSSS----
--------------S----------S--S----------S--S-SSSSS--SSSSSSSSSSSSSSS---------S----
-S-----S-----------------SS-S------------------------------------------S---S---S
-S----------S--SS-S-S-S---------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_116
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----------------ATGGAGCCTTCTCACTTGCC--------------------------------------------
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>reverse_2145
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----------------------------------------------------------------GGGTTACATGGCACCA
CAGA----------------------------------------------------------------------------
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