>input_sequence_78780
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------------------------------------------------------------------------ATGGTGCG
TGTAGCTATTAGGGTTCGAATTTGCATCTTCTTCT-TTTTTAGCTTAGCGAGCGGAGTGGCGCCTC----CCACTTTTCC
GCCTATAAATACCACCCCTGGGCGAAGCCTTGTGGAGAGAAATCTACCACCGCTCTCCCTCTCCCGGCCTG------CAC
TCACAAGCAGCGGCGAAGCCTTCTC---TGCCTTCCTCCTCCT--CTC--TCTTTCTGCCATGAAGCCCCCTCACTTCAC
TGGGGAAGCGGCAGCCAGCGCCTCATGGGCTCACGAGGTCAAGCAGGCCCTCCGTGACAAGCTCCGGTGGACACCCGCCG
CGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGACGGCCTCCTCGGCTGTGACCGCCGAGCCGGCGGTG
CAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAGGACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTG
GGGCCACACATAA-------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G515300
AATGAAGAGATATTTATAGAAAAAATAAATTACCACAGAGAGGGAAAGAGACCACAAAAAT----------CTTCACCTT
TTTTATTTGTTATTTAAAGAAAATGAGTTTTCATCTTATTCTTTCATTTGTGTCTGCTTCTCGGCAACTCAGTCGGAGGT
ACTCACAACAAGAAATTGAAAAGAAGAAGCTTTGTGACGGACAAGAATAGGACTTTAAGATTAGAAACTTTAAGAAATAA
CAAAAGAAAATCAGTTAATTCAAATATTGTTTTTGGGAACATGTTTTATGTTCATGTCG---------------------
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-------------------------------------------------------TTGTGTCTGTGTCAATGGAACTTCC
CGCAATTGTGAGAGCCAGATTTATCTCTTCTTCTTATCAATTCAAAAAGAATTACTCCGAGATCTTCTTAGTACACAAGT
CTTCATTAGGGGACCAAGAGTTCAGGTCTTAGATTTAACACTGATGCTCGCATTTTCTTGCATTTATTTCAGGCCTTCAG
GCGATGTGCATTAAGTGGGAGGAGACGTTTTCATCGTCTACGAAGGCGTTTGTGGCGGCTTTGTAATCTCAAGATGACGT
GCTGGCTCAGTCTCTTGAAGATGCTCATAGAGATAGAAGGA-------TTCATAGAGGTGAGTGAATGCTCATGTATGCG
AGCAACTTCGATTGTACCGTGTTAAATAAAACTAGGACTATCATGCTCTCTTGGGTGCAACTTTGGATTACC--GGGAAA
AAACCCGAACTAAAAGGACATGGCAATATCAAAATCACGGAGACTATACATAGTGGGAGACATGGCGGGA---CCGGAAC
GAACAACACTTT----CCTTTT---AATAAAGCATCACAAAGAAAATATCCACTTGCCAGCAAGA----AAAAATATCCA
TTTCTCAAGAGGCCACCAAGAGCAATCGGGCAACCACCTTCACCTTGGTTAATTAATTAACAACG-CCCCCGCTGACAGC
TACTTAAGCCCTAATTAACAATCACCACCAAAAACCAAATCAAAGCTTCCCATACACCCTGAATATA--CATATGGTGCG
TGTAGCTATTAGGGTTCGAATTTGCATCTTCTTCT-TTTTTAGCTTAGCGAGCGGAGTGGCGCCTC----CCACTTTTCC
GCCTATAAATACCACCCCTGGGCGAAGCCTTGTGGAGAGAAATCTACCACCGCTCTCCCTCTCCCGGCCTG------CAC
TCACAAGCAGCGGCGAAGCCTTCTC---TGCCTTCCTCCTCCT--CTC--TCTTTCTGCCATGAAGCCCCCTCACTTCAC
TGGGGAAGCGGCAGCCAGCGCCTCATGGGCTCACGAGGTCAAGCAGGCCCTCCGTGACAAGCTCCGGTGGACACCCGCCG
CGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGACGGCCTCCTCGGCTGTGACCGCCGAGCCGGCGGTG
CAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAGGACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTG
GGGCCACACATAAACGAGAAAAGCAAGTGCACGCACG----GCCATGCCTTGTCTTGGCCGGATCTGCAATTGCACCTCA
ACAAAAATATGGACTA----GTACGTATATATATGTGGCCGTATGGACCATCAAC-------TGATGAACATGAACTCAT
CAAGGACCAATTAAAAACTGGGACTA----GATCGGG---AGAAGAAGATGTGGTGCTTGAGGTATTTGTTCAT----GT
TTCTCTT-GGAGAGATGCATGCATGCA----TGGGGAGATCTCGCCTGAC----GGGTTTGGTGCATATATATGGCCTAT
GGGTGTTGCTGCCTGGCCGGTTGA--------------AGCTGCAGCTTTGTTGTAGCCATGAACCTGTTTTTTTTGTTT
CTCTCCAGAAAATCTGTACCAAGAGCCTGTGAAAAGCTATGTGTGTATGAGAGACTATGAGCTAGC---AAAAAGTTCTT
CCTCCTTCCCATGCCATG-----TTTATCCGGTTGTTCCTTGCCTTGTTGGTTTCTCCTGTGCATCCAAAATAACCGTGG
TGTTAATTCCTGCAATAC----GCAGAGGAAGAACCAGCCATGGTGCTTAATTCTAGTATG------------------T
GGTGGTGCTAATTTAAGTTGCTGGTGTGACTATGGATTGGTCTCCCTTTA------TGTCCTTTTGATCTGGAAAAGGTT
GTTGGGAACCAGCCTGGATCCTAGTCATGGAAGATACATGTTGATGATCCATGGATGAGGGAGTTCATCATGCTTTCCTG
CTGCAAGGTCCAGATCACAAAGAGAGGGTACTCTTTGTCATATGTTTGTTTGTTTGTTTGTTTGGTTGTTGTGTGAGAGC
ATG-----AGCATCTTTTCCATGTCTCCTGATCTGGAGAAGGTTGTTGGAGACCAGCCTTAAACTGTGAAACATGCTCAT
CAAAGACTAATGATCTGAGAAGTTCATGGCCTCTCTCTCTCTCTC--------ATCATGCTATTTTAGAGGCAATAATTC
ACAAGTAAACAAAAGAGAAGGAA---AAAAAAGGAAGGAGACTTTGAATTCGATTCCTCTGTCCTGTAAACTAG
>chr5B_1
AATGAAGAGATGTTTGTAGAAAAAATAAGTTACCACGAAGAGGGAAAGAAACCACAAAAAATCTTTACTCGCTTTACCCT
TTTTATTTGTTT----AAAAAAATGAGTTTTCATCCTCTTCTTTCATTTGTGCTTGTGCCTCGGCAACTCAGTTGGAGGT
CCTCACAAGAAGAGCTTGAA---AAGAAGCTTTGTGACGGACAGGAAAGGGACTTTAAGATTATAAGCTATAGA------
------AAAGTCAGGAAATTCATGTATTGTTTTTGGGAACATGTTTTATGTTCATGTCATTTGCGTGTCTGTGTTGATGG
AACCTCAGGCAATTGCGAGCACCAATTAAAAAGAAGCTTTGTGACGGACTGGAATGGTACTTTAAGATTATAAGCTTTAA
AAAAGTCAGGAAATTCAGGTATTGTTTTCGGGAACATGTTTTATGTTCATGTCATTTGCGTCTGTGTTGATGGAACTTCA
CGCAATTGCGAGCACCATTTAAGAGTTTAAGTCC----------------------------------------------
-----------------------------TAGACTTAACATTGATGCTCGCATTTTCCTGCATTTATTCTAGGCTTTCCG
GCGATGTGTGTTCAGTGGGAGGAGATGTTCTCGTGGACTACTAAGATGTCTGTGACGACTTTGTAATTTCAAGATGATGT
GCCAGATCAGTCTGTCGAAGCTGCCCATAGGGGTAGGGTATGCGTCCGTTCATAGAGATGAGTGTATGTGAGCGGCTTTG
ATTATTGTCTTTTTTTTAAGAAA----AAAACTAGGACTACCTCGCTCTCCTGCGTGCAACTATGGATCACCGGGGAA--
------------------------AATATCAAAATCACGGAGACTATATATAGTGGGAGACACGGTGTGGGACCC-GAAC
GAACAACATTTTTTACCTTTTTATAAATAAAGCATCACAAAGAAAATATCCACTTGCCAAGACGAAGAGAAAAATATCCA
TTTTTCAAGAGGCCGCCAAGAGCAATCGGGCAAC------CACCTTGGTTAATTA----ACAACGCCCCCCGCTGACAGC
TACTTAAGCCCTAATTAACAATCACCACCAAAAACCAAATCAAAGCTTCCCATACAC----AAAATATACATA--GTGCG
TGTAGCTATTAGGGTTCGAATTTGCATCTTCTT-T-TTTTTAGCTCAGCGAGTGGAGTGGCGCACTGGCGCCTCTTTTCC
GCCTATAAATGCCGCCCCTGGGCGAAGCCTTGTGGAGAGAAATCTACCACCGCTCTCCCTCTCCCTCCCGGCCTGCACAC
GCACAAGCAGCGGCGAAGCCTTCTCAGCTGCCTTCTTCCTCCTCCCTC--TCTTTCTGCCATGAAGCCCCCTCACTTCAC
CGGGGAGGCCGCCGCCGGCGCCTCATGGGCTCACGAGGTCAAGCAGGCCCTCCGTGACAAGCTCCGGTGGGCACCCGCCG
CGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGACGGCCTCCTTGGCTGTGACCGCCGAGCCGGCGGCG
CAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAGGACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTG
GGGCCACACATAAACG-GAAAAGCAAGTGCACGCACGCACGGCCATGCCC-----TGGCCGGACCTGCAATTGCACCTCA
ACCAAAATATGGACTAC----TACATATATATATGTGGCCGTATGGACCATGCATGAACTGATGATGAACATGAACTCAT
CAAGGACCAACTAAAAACCGGGACTAGATCGATCGGG---AGAAGAAGATGTGGTGCTTGAGTTGTTTGTTCAT----GT
TTCTCTT-GGAGAGATGCATGCATGCATGCATGGGGAGATCTCGCCGTGACGGCCGGGTTCGTGCATATATATGGCCTAT
GGGTGTTGCTGGCCCTGGGTTGAAGCTGCGCAAGAGCTAGCTGCAGCTTTGTTGTAGCCATGAACCTGTTTTTTC--TTT
CTCTCCAGAAATTCTGTACCAAGAGCCTGTGAAAAGCTATGTGTGTATGAGA--CTATGAGCTAGTTAAAAAAAACTCTT
CCTCCTTTCCATGGCATGGCATCTCTCTCCAGTTGTTAATCTTGCCCCAGTTGGTTTCTGTGCATCCAA---AACCATGG
TGTTGATTCCTGCAATATATATGCAGAGGAAGAACCGGCCATGGTGCTTAATTCTAGTATGCCGTGGTGCTAATAAGTTT
GGTGGTGTG------------------GACTATGGAATGATCTTACTTTAAT-TCTTGTCCTTTTGATCTGGGAAAGGTT
GTTGGGAACCAGCCTGGATCCTGGTCATGGAAGACAGACC-----------------AGGAAGTTCATCATGCTTTC---
CTGCAAGGTCCAGATCACAG-GAGAGGGTGCTCTTTGTCATATG----------------TTTGGTTGTTGTGTGAGAGC
ATG-----AGCATCTTTTCCATGTCCCCTGATCTGGAGAAGGTTGTTGGAGACCAGCCTTGAACTGTGAAACATGCTCAT
CAAAGACCAATGATCTGAGGAGTTCATGGCCCCTCTCTCTCTCTCTCTCTCTCATCATGCTATTTTAGAGGCAATAATTC
ACAAGTAAACAAAAAAGAAGAAGAAGAAAAAAGGAAGGAGACTTTGAATTCGATTCCTCTGTTGTGTAAACTAG
>chr4A_683
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-------------------------------------------------------TGCAACTTTGGATTACTAGGGGAAA
AAAT--GAACTAAAAGGACATGGCAATATCATAATCACGGAGACTATATCTAGTGGGAGACACGGTGGGA---CC-CAAC
GAACAACATATTTTAACCTTTT---TATAAAGCACCAC-AAGAAAATATCCACTTGCCAGGACGAAGAAAAAA-TATCCA
TTTTTCAAGAGGCCGCCAAGAGCAATCGGGCAACCACCTTCACCTTGGTTAATTA----ACAACG-CCCCCGCTGACAGC
TACTTAAGCCCTAATTAACAATCACAAAC-AACACCAAATCAAAGCTTCCCATACAC----AATATA--CATA--GTGCG
TGTAGCTATTAGGGTTCGAATTTGCATCTTCTTCTTTTTCTAGCTTAGCGAGTGGAG--------TGGCGCCTCTTCTCC
GCCTATAAATGCCACCCCTGGGCGAAGCCTTGTGGAGAGAAATCTACCACCGCTCTCCCTCTTCCTCCCGGCCTGCACAC
GCACAAGCAGCGA----------------GCCTTCCTCCTCCAGTCCTCATCTTTCTGCCATGAAGCCCCCTCACTTCAC
CGGGGAGGCCGCCGCCGGCGCCTCCTGGGCTCACGAGGTCAAGCAGGCCCTTCGTGACAAGCTCCGGTGGACACCCGCCG
CGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGGCGGCCTCCTCGGCTGTGACCGCCGAGCCGGTGGCG
CAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAGGACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTG
GGGCCACACATAAACGGAAAAAGCAAGTGCACGCGCGCACGGCCATGCCT-----TGGCCGGATCTGCAACTGCACCTCA
ACAAAAATATGGACTACTACGTACATATATATATGTGGCCGTATGGACCATGAAC----------TGAACATGAACTCAT
CAAGGACCAATTAAAAACTGGGACTA----GATCGGGAGAAGAAGAAGATGTGGTGCTTGAGTTATTTGTTCATTCATGT
TTCTCTTGGGAGAGATGCATGCATGCATGCATGGGGAGATCTCGCCCTGA----CGGGTTCGTGCATAACGGCGTTGATG
GGTT--------------GTTGAAGCTGCGCAAG----AGCTGCAGCTTTGTTGTAGCCATGAACCTGTTTTTC--GTTT
CTCTCCAGAAATTCTGTACCAAGAGCCTGTGAAAAGCTATGTGTGTATGAGA--CTATGAGCTAGT-AAAAAGAACTGTT
CCTCCTTTCCATGGCATG-----TCTCTTCGGTTGTTCCTTGCCCTGTTGGTTTCTTCTTTGCATCCAA---AACCATGG
TGTTAATTCCTGCAATAT----GCAGAGGAAGAACCAGCCATGGTTCTTAATTCTAGTATG------------------T
GCTGGTGTG------------------GACTATGGGATGATCTTTCTTCCTTGTCTTGTCCTTTTGATCTGGAAAAGGTT
GTTGGGAACCAGCCTGGATCCTGG-------------------------------------AGTTCATCATGCTTTT---
CTTCAGGGTCCAGATCACAAGG-GAGGGTACTCTTTGTCATATGC--------------------TTGTTGTGTGAGACC
ATGACATGAGCATCTTTTCCATGTCTCCTCGTCTGGAGAAGGTTGTTGAAACG--------------------TGCTCAT
CAAAGACTAATGATCTGAGAAGTTCATGGCCTTCTTTCTCTCTG---------ATCATGGTATTTTAGAGGCAATAATTC
ACAAGTAAACAAATAAG----------AAAAAGGAAGGAGACTTTGAATTCGATTCCT----------------
>SNPs
-----------S---S------------S-------SS-----------S----------S-------------S---S-
-----------SSSSS--S----------------S-S--------------SS--SSS--------------S------
S-------S----SS-----SSS--------------------S---SS--------------S--S--S--SSSSSSSS
SSSSSS---S----SS------SS----------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S--------SS----------S
--------S---SS---SS-SSSSS-S-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S----------------S----------SS----S---S-
--------SS--S------------S---S--S-S-S----S---SS--S----S--S---------S---------S--
--SS-S-------S-S----S---S-----S-S---SSSSS----------------S------S---SSSSS-SS-SS-
-SS-SSS--SS--S-SSSSSSSSSSSS-------------S-SS------S--S--------------------------
---SSS------------------------------------------S-------------S--S---------S----
--------S---------------------------------------------------S-S-----------------
---S----------S----------------------------------------SSSS---------------------
---------------------------------------------------------SSSS------------SS-----
----------------------------------------------------S----------SSS------S-------
----------S------------------------------------------------------SS--S----------
S-------------------------------------------------------------------------------
S-----S--S--S---S---------------------------------------------------------------
------------------------------------------------------------------------------S-
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----------------S---------------------------------SSSSS-------------------------
------------------------S--------------------------S----------------------------
--------------------------------------------------------------S-----------------
----------------------------------------------SSSS----S--S--S-------------------
-----------S-SSSSS-S-SS---------------------------------------------------SS----
-----------S----------------------------------------SS-----------S--------SS----
-------S-----S----------S-S-----------------S-----------S------------SSS----S---
-----------------S--------------------------------------------------------------
-------SSSSSSSSSSSSSSSSSSSS---------S--S---SS-----------------------------------
----------------------S-----------S-S-SSSSSSSSSSSSSSSSSSS---S----------------SSS
--------------------S-----------------------SSSSSSSSSSSSSSSS--------------------
------------------------------------------------------------S-------------------
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--------------S-----S-S---------------------------------------SS----------
>forward_154
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------------------------------------------------------TGCTTCTCGGCAACTCAGTC------
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>reverse_1733
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----------------------------------------------------TCTTGGCCGGATCTGCAATT--------
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