>input_sequence_78776
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---ATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTCCGTCGCCGTCGCCGTCGCCGCACCACTACCGCGGCCGGTT
GCGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTCGAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGT
CGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGACGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATC
CTAGCGTCGCCTCGGTACGCGGGGGCGGGGGGCTCGCCGGCGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGAGACAT
ACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTACGCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAA
CCCGCCGGAACCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTGTTCGGCTGCCTCAGCTTCATCGGCGCACTCTTCCGG
CCGTGA--------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G133700
AAATATTTACAACACCTAGGCAATATTATCTACTCTCTCTGTTTTAAATATAAGTTTTTTTAGAGATTCCACTACAAACT
ACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCATTGATTCTGCTTCGTATATAGTCCATAATGAAATCTCTA
AAAAAAACTTATATTTAGACTATACAAATGGCTGAGACTAGCAGCGAACATGCAGTAATGAAAACCTTAATATATCCTTA
AAAATCTCTAGTGGTCGAATATGTTCCTAATATTTCTTACTCTATATTTCTTATAAGATATAACTACTACTT--------
---------------------CCTCCGTTCACAATAAGATATTTCGAATATTTCAATGTAGCC--TATACAGATTGAAAT
GAATAAAC--------TAAAAAAAGTCTGTATATACATGTAAAGTTTTTTTTGACGGGTATATACATGTAAAGTTAAATC
CATCTTAGTTAGCACTCCCTCCGTCCCATCTTATATTATGGGAGGGAGTATTTGTGAAAGGATGGAGTATTTTTTACTGT
AAATCTACCATAAGACGCAGGGAATATCTAATTTCTGATGCAATATACAGTCCCTAAAAAGCAGCTAAAACGCCCAAAAT
CCCCACGGAGAAACACAGCCCCATGGAGTAGGACAACGTTCACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCG
GGCCCACACCTCCTCCACCCGAAGCCGATCTGACGAGCCGTTCCGGGCCCAGACACTACTCACTCCTCCCTCCAAACAAA
TTGTATAATTATTTTGACGTCCTTAAAACCTTTTTTTGTGTTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAGCTAT
TTCCCAATTTATATACTCGAGTGAATT-GCTTCTCCCTCTCT---CCCTCTCTCTCTCTCTCTCCTCTCCCCCGCTCAAA
GTCGTCGTCTTGCTCTCGAGCTGGTTGATTCGATTCTTATCAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCG
GTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTCCGTCGCCGTCGCCGTCGCCGCACCACTACCGCGGCCGGTT
GCGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTCGAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGT
CGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGACGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATC
CTAGCGTCGCCTCGGTACGCGGGGGCGGGGGGCTCGCCGGCGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGAGACAT
ACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTACGCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAA
CCCGCCGGAACCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTGTTCGGCTGCCTCAGCTTCATCGGCGCACTCTTCCGG
CCGTGACTTCTCCGGACGGCGCGCACCTCCATGCGGTTCTTGCTGCACCTCCGTGAATTCTCTTCGATTTCTCTTTTCTT
CTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTTCCGGTTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTA
GGATTAGACACAAAGAGGAATGATGGCAACAAGAGAAATGATGAATGTCATACTACTAACAAAGCTGATTAGTCGTCATG
AACTCATGATTGATGCAATAATGGA-------ATGATCAGAACACAAGCATGTGGAGGAAAATAATTGAAGTAAATTGAT
CGGGAAAAAAAAGAGACAATAAATTGCTATCACCACAAGTCTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAA
TTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCAATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACA
ATCATTTCCTTACACCGGTGTAAAATTCCATCCCTCTCCTCTAATAGTCCTTGTCATTATGAGCTCGCCGGGGCTTGGGG
TTGATGGTCGCGCGCAGAACTTCAGCGACAACTGCGGCATCAGGGTTGTCAAAGAGAGATTCCTGCGGTGGCGATGGCGG
CCGACGTTTAGTCGCAAAGGGACTCCAGATAGACTTCTTGTTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAAC
TGCTGTCAATACCACTTGTGCTCAAATTGTTTCCAGTGCATTGTATCTTATCATATGATTCGTGCACGTGATTTCTATAG
CTGACAGGCAGGATGTTCAGGATATTTAACAGATTACAACATAC------------------------------------
------------------------------------------------ATACTTGATTATATGAGTGAATTCCAGTTTTT
ACCCCTGGTTTCACA--TGTGGTAGATTTTACCCCATTTAGCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAGATTA
CCCCATTTCATTTTATTTTTTATTCCTCTGCTGACTGTGTATATGCCACGTAGATGGTT
>chr5A_180
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-------------------CTATACAAATGGTTGAGACTAGCAGCGAACGTGCAGTGATGAAAACCTGAATGTACCCTTA
AAAGCCTCTAGTGGTCGAATATGTTCCTAATATTTCTTACTGTACATTTCTTATAAGTTATAACTACTACTTTTTCGCAA
AAAAAGTTATAACTACTACTTCCTCCGTTCATAATAAGATATTTTGAATATTTCAATATAGCCTATATACAGATTGAAAT
GAATAAACAAACACACTAAAATATGTCCATATACATACGATTCAGAAAAAAAATCAAAACAC------------------
---CTTAGTTAGCACTCCCTCCTTCCCATCTTATATTATGGGACGGAGGGAATATTCGGAGTAT-----TTTTTTACTGT
AAATCTACCATAAGACACAGGGAATATTTAATTTCTGATGCTATATATAGTCCCTAAAAAGCAGCTAAAACGCCCAAAAT
CCCCACGGAGAAACACAGCCCCATGGAGAAGGACAACGTTCACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCG
GGCCCACAC---CTCCACCCGAAGCCGATCTGACGAGCCGTTCCGGGCCCAGGCACTACTCACAACTCCCTCCAAACAAA
TTGTATATTT----TGAAGTCCTTAAAACCTT--TTTGTGCTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAACTAT
TTCCCAATTTATATACTCGAGTGAATTTGCTTCCCCCTCTCTACCCCCCCTCTCTCTCTCTCTCCTCTCTCCCGTTCAAA
GTCGTCGTCTTGCTCTCGAGCTGCTTGATTCGATTCTTATCAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCG
GTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTCCGTCG------CCGTCGCCGCACCACTACCGCGGCCGGTT
ACGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTCGAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCTCCGT
CGTGCCCCCCGCCGGGGATCGAGATACCCAGCAACGACGACGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATC
CTAGCGTCGCCGCGGTACACGGGGGCAGGGAGCTCGCCGGCGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGGGACAT
ACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTACGCGTACCTGCAGATGACGCCGTCGGCGAGGGAGGACCCAA
CCCGCCGGAACCGGCGCTGGCGCAGCCCGCTCTGCCGCCTCCTGTTCGGCTGCCTCAGCTTCATCGGAGCACTCTTCCGG
CCGTGACTTCTCCTGACGGCGC--ACCTCCATGCGGTTCTTGTTGCACCTCCGTGAATTCTCTTTGATTTCTCTTTTCTT
CTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTGCCGGCTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTA
GGATTAGACACAAAGAGGAATGATAGCAACAAGAGAAATGATTAATGTCATACTACTAACAAAGCTGATTAGTCGTCATG
AACTCATGATTGATGCAATAATGGA-------ATGATCAGAACACAAGCATGTGGAGGAAAACAATTGAAGTAAATTGAT
CCGG-AAAAAAAGAGACAATAAATTGCTGTCACCACAAGTCTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAA
TTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCAATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACA
ATCATTTCCTTACACCGGTGTAAAATTCCATCCCTCTCCTCTAATAGTCCTTGTCATTATGAGCTCGCCGGGGCTTAGGG
TTGATGGCCGCGCGCAGAACTTCAGCGACAACTGCAGCATCAGGGTTGTCAAAGAGAGATTCCTGCGGCGGCGATGGCGG
CCGACGTTTAGTCGCAAAGGGACTCCAGCTAGACTTCTTATTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAAC
TGCTGTCAATACCACTTGTGCTCAAATTGTTTCCAGTGCATTGTATCTTATCATATGATTCGTGCACGTGATTTCTATAG
CTGACAGGCAGGATGTTCAGGATATTTATCAGATAACAACATAC------------------------------------
------------------------------------------------ATACTTGATTATATGAGGGAATTCCAGTTTTT
ACCCCTGGTTTCACGTTTGTGGTAGGTTTTACCCCATTTAGCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAAATTA
CCCCATTTCATTTTATTTTTTATTACTCTGCTGACTGTGTATATGCCACGTAGATGGTT
>chr5B_586
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----------------------------------------------------------------CTAAAACGCCCAAAAT
CCCCACGGAGAAACACAGCCCCATGGAGAAGCACAACGTTCACTCGTGGCCGTGCCGACGTGGATCCAATAATTGTTGCG
GGCCCACACCTCCTCCACCCGAAGCCGATCTGACGAGCCGTTCCGGGCCCAGACGCTACTCACTCCTCCCTCCAAACAAA
TTGTATAATTATTTTGACGTCCTTAAAACCTT--TTTGTGCTCGATGACATGCGGGCCAGAGCAGCCTCCGACCAACTAT
TTCCCAATTTATATACTCGAGTGAATT-GCTCCCCC----CT---CTCTCTCCCTCTCTCTCTCCTCTCTCCCGTTCAAA
GTCGTCGTCTTGCTCTCGAGCTGTTTGATTCGATTCTTATCAATCCACCATCCTCCGTAGCTGCAGGTCCGATCGTGGCG
GTTATGCCATCGGCAGCGCTGGCTGCCACGCCGGACTCTGCGTCG------CCGTCTCTGCACCACTACCGCGGCCGGTT
GCGCTCGCCGCTGGCAAACGGCGGCACCAAGGGGAACTTCGAGCTCCGGCACTGGCGCACGCCGCTCAAGCGGGCGCCGT
CGTGCCCACCGCCGGGCATCGAGATCCCCAGCAACGACGACGATGGCAGCGGGAACGGGTACACCAGCCTCCGGGACATC
CTAGCGTCACCGCGGTACGTGGGGGCGGGGAGCTCGCCGGCGGCCTGCGTCATCGGTGGCGCCGGCAGCTGTGGGGACAT
ACACATGATACGCCACCCGCTGGTAAAACACGCGGCGTACGCGTACCTGCAGATGACGCCGTCGGCTAGGGAGGACCCAA
CCCGCCGGAACCGGCGCTGGCGCGGCCCACTCTGCCGCCTCCTGTTCGGCTGCCTCAGCTTCATCGGAGCACTCTTCCGG
CCGTGACTTCTCCGGAGGGCGC--ACCTCCATGCGATTCTTGTTGCACCTCCTTGAATTCTCTTCGATTTCTCTTTTCTT
CTTTTCTTTTGTGCGATTAGATTCTTTTGTAGAGTTTTCCGGCTTATGTTTGGGTTGTAATTTGTGTGAATAATTTGGTA
GGATTAGACACAAAGAGGAATGATAGCAACAAGAGAAATGATTAATGCCATACTACTAACAAAGCTGATTAGTCGTCATG
AACTCATGATTGATGCAATAATGGAAAGGAAAATGGTCAGAACACAAGCATGTGGAGGAAAATAATTGAAGAAAACTGAT
CGGG-AAAAAAAGAGACAATAAATTGCTATCACCACAAGTCTACAACATGCTTCATTCATATCTCTTCACACTGGGTTAA
TTGCTGGATTGTTTTTCTATGTACTAGATTTCTTCTTTCAATTTGACCTTTGCTTGAATCATTCTATTTCTATGTACACA
ATCATTTCCTTAAACCGGTGTAAAATTCCATCCCTCTCCTCTAATAGTCCTTATCATTATGAGTTCGCCGGGGCTTGGGG
TTGATGGTCGCGCGCAGAACTTCAGCGACAACTGCGGCATCAGGGTTGTCAAAGAGAGATTCCTGCGGTGGCGATGGCGG
CCGACGTTTAGTCGCAAAGGGACTCCAGCTAGACTTCTTGTTCCTCTGCTGAACACGCACAATCAGAAAAGAGATGAAAC
TGCTGTCAATACCACTTG--CTCAAATTGTTTCCAGTGCATTGTATCTTATCATATGATTCGTGCATGTGAGTTCTATAG
CTGACGGCCAGGATGTTCAGGATATTTAACAGATTACAACATACTCCCTCCGTTCCAAAATAGATGGCTCAACTTTATAC
AAACTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTACATACTTGATTATATGAGTGAATTCCAGTTTTT
ACCCCTGGTTTCACGTTTGTGGTAGATTTTACCCCATTTAGCAGAAATTCTCAATTTAGCAAAACTTGTGCCACAAATTA
CCCCATTTCATTTTATTTTTTATTCCTCTGCTGACTGTGTATATGCCACGTAGATGGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------S-----------------S------S----------S---S--S-----
---SS------------------------------------S--S------------S----------------------
-------------------------------S------------S------------S----------------------
---------------------S-S---SS----S-S-S-SSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------------S--------------------S----SSSS-S-SSSSS-SSSSSSSS-----------
----------------S----------S-------------S-----S--------------------------------
----------------------------S---------------------------------------------------
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--------------------------------SS------S----------------------------------S----
---------------------------------S-----------------------------------S----S-----
-----------------------S--------------------------------------------------------
---------------------------------------------SSSSSS-----------------------------
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-----------S------------------S-------------------------------------------S-----
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-------------------------------------------------------------------S------------
----------------------SS------------------S-------------------------------------
------------------------------------------S-------------------------------------
------------------------S-----------------S-------------------------------------
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----S---------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
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--------------S------------------------------------------------------------S----
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>forward_669
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---------GAAACACAGCCCCATGGAGT---------------------------------------------------
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>reverse_1563
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------------------------------------------CTGCACCTCCGTGAATTCTCT-----------------
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