>input_sequence_78775
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-----------------------------ATGGGGCAAGAAGAGGACGCCCTGACCGTGGCCTTGTCGTGGGAGCAGGAG
GAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGTCCTGTCGTGGGAGCACAAGCCGGCCGTGAAGAAGCCGGTCTC
GACGGAAGCC---C---GTGGTGGTGGCATGCGGGAGGGCCAGAGGAAAGTGCCGGCGCTGGCGAGGCGGCTGTCGGTGC
CGCCGCCGCCGGGCAGGCCGGCGGCGAGGGGCTACTCGAGGGCCGTCCGGCCGGAGGACGACCCTTTCCTGGCGGCGTAC
CTCGCCTGCACCAAGAGCAGCGGCGACGGCG------GGAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGCGA
GAGGCGGTGGAGCGTGCTCGGGCGTGGGCTGGGCGTGCTGTCCTGCAAGCGGTGCAACGGCGTCATGGAGCAGAGCATGG
TGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGATGCTTAA------------------------------------
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>chr5D_1_TraesCS5D01G016800
ACACAACATCGAACTCGAGATCTGGCACCCCTACATGAC------TAAGACGTTAGAGGAGGAAACCATACCTGGCATCC
ACAAATCACGAACCCAACACAGGATCCACCATCTTCCAGATGCCGCTGATGTAGACCACAATCTGCATCTGCGCTTGGAC
TACCTCCCAAGCTCCACGCCGATGCTTGAGCAAACATCGTCACAACGACAGACCCCAAGGACACAAGTCCACCACGAGGA
TGCCGCCGCCACACAATCCTTACGTGTACAATCTGGTTATCAGATCCATCCCAACCATAGGACTGCACGC-----CTCGT
CGGAGAAGGATTTGAAGAATCTTTATTCAGTGACGCCATCTCGACGGCCGAAGCCAAGACGATGAACAGCATAAAAACCA
AAACTACTAGGGCCTAAAGCGATCCACACGCGTGTATCCGGTGA-------------------------AGCCCCCGGAG
GACGGCGGCGGAGGAACTCTCCTTGCGGCAGGCACTGGCGAGATCACCTTTCTTTTTTGGAGGGGGAGAAAGAAAACGAT
GCACCTTCTTAGCAAGAGATTAC---CAGAATAATAAATTCAAAACTGCATCATTAACACGCGCGTACAAGCTAGAATAC
AATACGGTTGCAAAGTACCAG------------TAGTACAAATAACCCTTGGTCTCCCGCCATTCGTATGCATATATACA
ACCCGATCCCTTTAGCCGTCCCTCCACTACTAATACTGATCAAAAGCATAACCGCCCATGGAGCATAATATCCATTTAGT
TGGGCCATGCACACGTTTGGCATGCATGTACGCATGACGATGCATTCATGATCCATTTGC----------CCTCTCCTCT
CCTCTTCC----TCGCCCCACCACTTCCTCAAAAACCAACCACCGTCGTCCTCTTTCTCTTCTTCGTCTTGCTCACGCCA
AGAAGCACGGCAAGAAACCGTTGGTCCATACCAACACGACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTAGCTGCCGG
TGGCTCTTTGCCCTTGTGTACG----TACATGGGGCAAGAAGAGGACGCCCTGACCGTGGCCTTGTCGTGGGAGCAGGAG
GAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGTCCTGTCGTGGGAGCACAAGCCGGCCGTGAAGAAGCCGGTCTC
GACGGAAGCC---C---GTGGTGGTGGCATGCGGGAGGGCCAGAGGAAAGTGCCGGCGCTGGCGAGGCGGCTGTCGGTGC
CGCCGCCGCCGGGCAGGCCGGCGGCGAGGGGCTACTCGAGGGCCGTCCGGCCGGAGGACGACCCTTTCCTGGCGGCGTAC
CTCGCCTGCACCAAGAGCAGCGGCGACGGCG------GGAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGCGA
GAGGCGGTGGAGCGTGCTCGGGCGTGGGCTGGGCGTGCTGTCCTGCAAGCGGTGCAACGGCGTCATGGAGCAGAGCATGG
TGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGATGCTTAAT--AGTACTAGTAATTATCTCCTAATTTATCATCAT
CGTCATC------TCCTC-TTTTTGTTTGGCATGGTTTGCAGTACGTAGTTTCTTCC-----------------------
-----TGATAAACTTTGGTTAATTAGAT---GTAGAAAGTTTGAGA----------------ACACACTAAATTTGTCTG
TGTG-------CTGAAGAGGAAGCATGCATCATCTCA-----------------------------TCTTCCTATAGCTG
GGTTTTTCAGATTAT--------------------TGTGTGTCGCATAAGCATCTTGTTTCTTCTCTGTGATGC------
---------------TGGATGGATTGATTTCCATGACACTGACTCTCTGCCCCGCACTTGGAACTTTCTTCCTGTCAGTG
TCAATCAACCAGACAGTGACATCTAGAGGTTGACCGAGACGACTTGGAACATTCCATTGCTAATTGCTTGTGTCTGTGTT
CATTGTGCGGATAGGAATATGGATCACTGC---TTGGTAGTAACAGAAAAGTCGTTTATACAGATTAGGTAGGGGGTCTA
GTGTCACAAGCATAACTGCTGCTGCGGTCTATCTGCAAGTTGCACATAGTACCTGAATCTCAAAAGTGCAGTGCAACGGA
GGCTGGTCCATAGTAATTTAGTACTAGCTGCTGGTAAGCTACAGCCCG--------------------------------
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-----------------------------------------GCCCGGAGGAAAACCTATGGCCCAGTGATACTGCC----
---ATTTTCTCTGACCATTTTCATGCCGTGAGATAAGAGCTAAGA-------CAGGACACGTCAGGGGAGAGAAGGAGAT
GGCCCAGACAAGGACCTTCCTTCCTTCCCTTGATTTTTCCTTGGCTGACAGAGAAATTTCAGTTATGGGCTTGGCCACTT
AGGGCTCGAACGGTCAATG-GAAAAAAGAAGGAACATTACACACTCTGAAACATCTTGCGGCGATCTTGAGCATTCTATC
TTTGAATGTTCCTTCGTTAATTTCTTGACTTTGTGATCATTCTGTGAGCAGGAATATACTCCCTCCATTCCTAAATATTT
ATCTTTTTAAATATTTGTCTTTTTATAGATTTCATATGGACTACCACATATGAATGTATATAGACATA
>chr5B_7
------CATCGAACTCCATATCTGGCACCCCTACATGACCATGACTAAGACATTAGAGGAAGAAACCATACCTGATATCC
ACAAACCATGAACCCGGCACACGATCCACCATCTTTCAGATGCCATTGATGCATACCGCAATCAGAATCCTCTCTTGGAC
TACCTTCTAAGCTCCTGGCCAATGCTGGAGCAAACATTGTCACAACGGCAGAGCCCGAGGACACAAGTCCACCACGAGGA
TGCCGCTGCCACATCATCCTTACTTGAACGGTCTGATTTTCAGACCCACCCCCAACCATATATAGGACCGTATGGCTCGT
CGGAGAAGGATCTGAAGAATCTTTATTCAACGCCGCCATCACCGCTGCTGAAGCCAAGACAATGAACAATGTAAAAACTA
AAACTACTAGGGCCTAAAGCGATCCACGCGCGTCCTCACCACTGACGACCGAGATCGTCGGCAGAGGGGAGCCCCCGGAG
TACGGCGCTGGAGGAACTCTCCTTGCGGCGGGCACCGGCAAGATCGCCTTTCTTTCTTCGAGAGGGAGAAAGAAAACGAT
GCACCTTCTTAGCAAGAGATTAC---CACAATAACAAATTTAATACTACATCATTAACACGCGCGTACA----AGAATAG
AATACGGTTGCAAAGTACTACTAGTACTAGTACTAGTACAAACAACCCTTGGTCTCCCGCCATTCGTATGCATATATACA
ACCCGATCCCTAGAGCCGTCCCTCCACTGCCACTAAG----------------------------TAATATCCATTTAGT
TGGGCCATGCACACGTTTGGCATGCATGTACGCAT---GATGCATTCATGATCCATAAGC----------CCTCTCCTCT
CCACTCCCTCGATCGCCCCACCACTTCCTCAAAAACCAACCACCTTCGTCCTCTTTCCCTTCTTCGTCTTGCTCACGCCA
AGAAGCGCGGCAAGAAACCGTTGGTCCGTACCAGCACGACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTATCTGCCGG
TGGCTCTTTGCCCTTGTGTACGTACATACATGGGGCAGGAAGAGGAAGCCCTGACCGTGGCCTTCGAGTGGGAGCGTGTG
GAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGTCCTGTCGTGGGAGCTCGAGCCGGCCGTGAAGAAGCCGGTCTC
GACGCTTGAAGCACGTGGTGGTGGTGGCATGCGGGAGGGCCACAGGAAGGTGCCGGCGCTGGCGAGGCGGCTCTCGGTGC
CGCCGCCGCCGGGCAGGCCGGCTGCTAGGGACTACTCGAGGGCCGTCCGGCCGGAGGACGACCCGTTCCTGGCGGCTTAC
CTGGCGTGCACCAAGAGCGTCGCCGACGACG------GGAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGTCA
GAGGCGGTGGGGCGTGCTCGGGCGTGGGCTGGGCGTGCTGTCCTGCAAGCGGTACAACGGCGTGATGGAGCAGAGCATGG
TGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGATGCTTAATACAGTACTAGTAATTATCTCCCAATCCATCATCTT
CATCTTGTTGGATTCTTCTTCTTTGTCATGCATGGTTTGCA----CTAGTTTCTTTCTGGTCAAGGTTAATTAGTAGTAG
CGGTGTGATAAACTTTGGTG-ATTAGGAGAAGTAGAAAGTTTGATTCGTCAGGGAAAAGAAGACACACTTAATTTGCATG
TGTGGTGAAGACTGAAGAGGAAGGATGCATCATCATCT-------------------CAATCTTCATCTTAATTTCTATT
GCTGTGGGTTCAGATTTCAGAACATCAGATTATTGTGGGAGCCGCATAAGCATTTTGTTCCTTCTTCTCTGT--------
-----GATGGATGGATGGATAGATTGATTTCCATGACACTGACTCTCTGCCCTGCACTTGAAATTTTCTCCCTGTCAGTG
TCAACTC----GACACTGACATGCCGAGGTTGACCGA---GACTTGGAACATTCCATTGCTAATTTCTTGTGTCTGTGTC
CATTGTGTAGATAGGAATATGAGGCCCTGATTATTGGTAGCAACATAAAGGTCAGTTAT--AGATTAGGTAGGGGGTCTA
GT--CACAAGCACAACTGCTACCGCGGTCTATCTGCAAGTTGCAGATAGTACCTGAATCTCACAAGTGCAGTGCAACAGA
GGCTGGTCCATAGTAACTTAGTAGTACTAGCTGGAAACTACCTCCGTCCGGATTTATTGGTTCCCATTGTATTTCGTATC
AAATTTTGATTATAGATTAAACTAACAAAATGTTCACGCATGTCACCAAACATTATATTTTTTAAAACTATGTTCAAATA
CGAATCCAATGAAATAATTTTTCTTGACATGCATTAACATTTTGTTAGTTAAATCTTTAGTCAAAATTTGGTACAAACTA
TAAAGGGGACCTATAAACCAGGACGGAAGTAGTAAGTTACAGACCAGAGGGAAACCTATGGCCCAGTGATACTGCCTGTA
TCCATTTTCTCTGACCATTTCCATGCCGTGAGATAATAGCTAAGACAGGGCACATTTC---TCAGGGGAGAGAAGGACAT
GACCCAGACAAGGACCTCCCTTCCTTCCCTTGATTTTTCCTTGGCTGACAGAGGAATTTCAGTTATGGGCTTGGCCACTT
AGGGTTCGAACGGTCAACGAAAAAAGAGAGGGAACATTACACACTTTGAAACATCTTGCGGCGATCTTGAACATTCTATC
TTTGAATGTTCCTTCGTTAATTTCTTGACTTTGTGATCATTGTGTGAGAAGGAATATACTCC------------------
--------------------------------------------------------------------
>chr5A_434
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---------------------------------------------------------------------AGCCGCTGGCG
GACGGCGGTGGAGGAACTCTCCTTGCGGCAGGCACTGGCGATATCGCCTATCTTTCTTGGAGGGGGAGAAAGAAAACGAT
GCACCTTCTTAGCAAGAGATTACTACCAGAATAATAAATTCAAAACTACACCATTAACACGCGCGTACA----AGAATAC
AATACGGTTGCAAAGTACTAGTAG------------TACAAATAACCCTTGGCCTCCCGCCATTCGTATGCATATATACA
ACCCGATCCCTTTAGCCGTCCCTCCACTACCACTAA--ATCAAAAGCATAACCGCCCATGGCGCATAATATCCATTTAGT
TGGGCCATGGACACGTTTGGCATGCGTGTACGCAT---GATGCATTCATGATCCATTTGCCCTCTCCTCTCCTCTCCTCT
CCTCTCCCTCGATCGCCCCACCACTTCTTCAAAAACCAACCACCTTCGTCCTCTTTCCCTTCTTCGTCTTGCTCACGCCA
AGAAGCACGGCAAGAAACCGTTGGTCCATACCAGCACGACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTAGCTGCCGG
TGGCTCTTTGCTACTATGTACG----TACATGGGGCAGGAAGAGGACGCCCTGACCGTGGCCTTCTCGTGGGAGCAGGAG
CTGGGCATGCCAGAGAGCCCGAGGAAGCCGCCGGTGATCTTGTCGTGGGAGCTCGAGCCGGCCGTGAAGAAGCCGGTCTC
GACGGTTGAAGGAC---GTGGTGGTGGCATGCGGGAGGGCCAGAGGAAGGTGCCGGCGCTGGCGAGGCGGCTGTCCGTGC
CGCCGCCCCCGGGCAGGCCGGCGGCGAGGGGCTACTCGAGGGCCGTCCGGCCTGAGGACGACCCGTTCCTGGCGGCGTAC
CTGGCCTGCACCAAGAGCGGCGGCGACGGCGACGGCAGGAAGATGAAGACCGCACCAACAA---GGGAGGCCAAGGGCCA
GAGGCGGTGGAGCGGGCTCGGGCGTGGGCTCGGCGCGCTGTCGTGCAAGAGGTCCAACGGCGTGGTGGAGCAGAGCATGG
TGAGGATGGCCAAGCTGCCCGGGCTGGATCCCAGGGATGCTTAATAG-----TAGTAATTATGTCCTAATTTATCATCGT
CGTCATC------TCCTCTTTTTTGTTTGGTATGGTTTGCA----GTAGTTTCTTCC-----------------------
-----TGATAAACTTTGGTG-ATTAGAT---GTAGAAAGTTTGAGA----------------ACACGCTAAATTTGTACG
TGTG-------CTGAAGAGGAAGCATGCATCATCTCAATTGCTCAGAGATTTGGCAGCAATCTTCATCTTCCTATAGCGC
------------------------------TACTGTGTGAGTGGCATAAGCATCTTGTTTCTTCTTCTTGTTCTAATCTG
TGATGGATGGATGGATGGATGGATTGATTTCCATGACACTGACTCTCTGCCCTGCACTTGCAATTTTCTACCTGTCAGTG
TCAATCAACCAGACAGTGACATGCAGAGGTTGACCGA---GACTTGGAACATTCCGTTGCTAATTTCTTGTGCTTGTGTC
CATTGTGCAGATAGGAATATGGATCACTGC---TTGGTACCAACAGAAAAGTCGTTTATACAGATTAGGTAGGGGGTCTA
GT--CACAAGCACAACTGCTGCTGCGGTTTATCTGCAAGTTGCAGATAGTACCTGAATC---------------------
--------CATACTAACTTAGTACTAGCTG--------------------------------------------------
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-------------------------------GTAAGTTACAGCCCAGAGGAAAACCTATGGCCCAGTGATACTGCCTGCA
TCCA-TTTCTCTGACCATTTCCATGCCGTGAGGAAAACTTTGGAAGGAATTGCAGGACACGTCAGGGGAGAGAAGGAGAT
GGCCCAGA--AGGACCTTCCTTCCTTCCCTTGATTTTTCCTTGGCTGACAGAGAAATTTGAGTTATGGGCTTGGACACTT
AGGGTTCGAACGGTCAATGAGAAAAAAGAGGGAGCATTACACTCTCTGAAACATCTTGCGGCGATCTTGAGCGTTCTATC
TTTGAAAGTTCCTTCGTTAATTTCTTGACTTTGTGATCATTGTGTGAGTAGGAATATACTCCCT----------------
--------------------------------------------------------------------
>SNPs
SSSSSS----------S-S--------------------------------S--------S-------------SS----
-----S--S------SS----S-------------S--------SS-----S-S---S-----S-S---SS-S-------
-----S-S-------SS---S-----S----------S---------S----S---S-----------------------
------S------SS--------S--S--SS----S--S-----S---S---S-S-SSSSS-SS-S--SS----------
-----------S-----------------SS-S-------S-SS-S--S-----------S-------SSS-------S-
---------------------------S-----SSSSS-SSSSS------------------------------------
--------S------------------------------------S---------S------------------------
-----------------------------------------------S---------------------SSSS-------
------------------S-------------------------------------------------------------
------------------------------S-S--SSS-----------------------S------------------
-----------------------------------SSS------------------------------------------
-----S--------------------------------------S------------S----------------------
---------------------------------S----------------------------------------------
-------------------------------------S--------------------------S---------------
----------------------------------------------------S-S-------------------------
-----SS-SS--------------------------------------S-------------------------------
----------------------------------------------------------------S---------------
--S---------------S-----------------------------------------------------------S-
-----------------------------------------------------S---------S----------------
------------------------------------------------------------------------------S-
-----------------------------------------SSSS-----------------------------------
-------------------SS--------------------------------------------------------S--
-------------------------------------------------------------------------------S
-S-S-SSSSSSSS--------------------------S-------------------------SSS--S-SS------
----------------------------------------------------S-------S--S-----S----------
----------------------SS-------------SSS-------------------------S-------------S
--------S-------------------------------S---------------------------------------
--SS--------S-------------------------------S-----------------S--------------S--
----------------S-----------------S--SSSS-SS-SSS--------------------------------
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---------------------------------------------S----------------------------------
--------------------S---------------S-------------------------------------------
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----S------------------------S--------------------------------------------------
-----------------------------------------S------S---------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_782
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------------------------------------------AAAGCATAACCGCCCATGGA------------------
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>reverse_2173
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------------TAACTGCTGCTGCGGTCTAT------------------------------------------------
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