>input_sequence_78773
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-----------------------------------ATGGCCGTGGCCGCACGCGCACGGGGCTCGCCGCTCCTCCGCGCC
CTCTCCGGCACGAGGGCGCGGCCGCCGCTGGCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTCGACCG
CCACCTCTCCAAGAAGGGGCCCACCCCCTCCGCCATCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGAGGCTGA
CGAGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGCGCGACGCGCCTGTTCGAGTGGCCCGACGAGCGC
GGCGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGT
GGTCGCGCGGCTCCTCATCGGCGGCCGCGATGCCGTCGACCAGGCCCTCGAGCGCGTCGCCGACGCCTCCCGCCGCATGG
TCCAGGCCGAGGAGGCCAAGCGCCGCGGCGGGCCGTAG------------------------------------------
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>chr5A_1_TraesCS5A01G504600
GTGACGTCTGAATCTGTGTTTGCGCGTCCACGTTGACTTTAACCAGTCGCCGAACACAAGCTTCTCAACGCCCGGTCCAA
CGCAGCAAAACCGTCCTTCACCCGCAAGGAACCACCCCCTCCAAATCCCCCACAGGCCCACACCACCCCTCCAAAAAACA
AAACCCACACCAACG---CATCCAAACCACACGGCCACGACCGACCGATGGCCCAGCCACCGGCGGCGACGACTCCGGCA
GCGGCGTACGGGTGCGCGGCGTGCGGCGCGGACCTGAACCTGTCGGCCTCCCACCTGTACCCGGCGAGGACCTACTTCGA
GGCCGGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGCC
CCTTCTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAGCTGCGACGCCTGCGGCAAGCTCCTC
GGCCACGTCTACGACGACGGGCCCCCGCTCATGGACGGCACCGGCCAGCTCGGAATGGGCCCCAGCCAGGTCGTCCCCCG
CCGGCCCAGGTACCGGTTCAAGGTCAAGGCCGTCACCGCCGCCGGTTCCTCC---------GCCGCCGCCGCGCGCTGAC
CGCTGAGTTGAGAAGCTT-GATTCGTCCCGTGGCGATGCTTGCTTACAGTTACAGATGTGTTTCCTTCCTGCTGTAAATC
AGTACTACTACTACTAGATGTAAAAAAT--------------------------GTGGAATTTACTGTGGATTGTGTGTG
AAATCGAAGATGTTGTGATCATCAAGC----------------------TTCTGATCCGATTTGCTGTGAAAATCGAAGT
AGGAGTAGTTCTGAATCATCGTGCTCCCGATCTGAAATTCTGAACAGTTCGCTGCTCTTTGGTGGCCTGGTGCCTTCGCC
GCGAGTCGCAACCCAACCAGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAACCGACGACC
CGACCC--------------ACACGACGCACCACCATGGCCGTGGCCGCACGCGCACGGGGCTCGCCGCTCCTCCGCGCC
CTCTCCGGCACGAGGGCGCGGCCGCCGCTGGCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTCGACCG
CCACCTCTCCAAGAAGGGGCCCACCCCCTCCGCCATCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGAGGCTGA
CGAGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGCGCGACGCGCCTGTTCGAGTGGCCCGACGAGCGC
GGCGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGT
GGTCGCGCGGCTCCTCATCGGCGGCCGCGATGCCGTCGACCAGGCCCTCGAGCGCGTCGCCGACGCCTCCCGCCGCATGG
TCCAGGCCGAGGAGGCCAAGCGCCGCGGCGGGCCGTAGAT--CCCCACACCCCCACCCCGACTCGATGCGCCCCATGCTT
CC---TCTTCTTCTTCAGCTGCTGCTGCT------TATATTTGTTAATTTG-GTTGTAAAATTCCCTATGTGCGAATATT
TATGTGATGTG-ACACAAAATGAATTGCTTATGAAGCATTTCATCCTTGTCAATTGTCATGCCCTGTTCTATCTTTGCCA
AGAAATGTGACAGGAAATCAACTTCCATTTTGCATT---TGATCCATGTATGATGTAT-TGTGTT----ATACAA-----
-----AGTTACCAGTAATTTCAAAATTTTCAGTTGAGAAAAATTGACTTTGTACATCACATCATCGTCAGTTACAAAAGT
CAAAAAGGCGATG---------CTTCTTCCAATCCGTGAGTAATCTCCATTGCCAGCAGCAAGACAAACCCTTGCTCTTC
GAG-CCGATGCGA------CGAGTACATGAGAGTTGATCCCTTATGTATGTTCCCTGAAGATTGTACTGGTGCTGGCACC
AGA--AATTCAGAAGCTTTTTTTTAGAGCAAAGGAGGATCAGAATTCAGAAGCTGTGTGATGTCTGAATCTGTGACATAC
CAGCTGCAGCTTGTCATGAAACCATATCTGCGTCCTGGCGCTCTCTTGCTTTTGCTGAAATGCATTCAGGC-TTGCCATC
AACGATAACCATTCTGTTCACCAGTAGTCACCGCAGCAGCAAGACCCATCCGAGAATTGGTGATAGATATTTGTGTCGCC
GACAACAATCCTCCGTCCCGAATATTTCGATATCAACTTCAGCGCATGATGGCAGTCGTTGCATATGCGCACGTTCTTCT
TGACAAGAATTGGGGTTCTGGCCTCGGATGATATCAGACCAAAGACGACAGCCAGCCTCACACTATGCTTGTTGGGCTCT
GTTGTTCTCCTCGACTCCAGAGAGGTTGGATCAGATTGATTTGTTGGGTCAACCATTTCTCCAATCTTTCCTGACAGAAA
GTTGGACACTTCCTGAATCATCTTGCTCTGAGGGTGCGTCGTGTCCCC
>chr4D_142
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-------------------------------------------------------------ACCACCCCTCCAAATCC--
---CCCACACCAAACAACCATCCAAACAACACGGCCACGATCGACCGATGGCCCAGCCACCGGCTCCGGCGACTCCGGCG
GCGGCGTACGGGTGCGCGGCGTGCGGCGCGGACCTGAACCTGTCGGCCTCCAACCTGTACCCGGCGGGGACCTACTTCGA
GGCGGGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGGC
CCTTCTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAGCTGCGACGCCTGCGGCAGGCTCCTC
GGCCACGTCTACGACGACGGGCCGCCGCTCATGGACGGCACCGGCCAGCTCGGGATGGGCCCTAGCCAGGTCGTCCCCCG
CCGGCCCAGGTACCGGTTCAAGGTCAAGGCCGTCACCGCCGCCGGTTCCTCCT------CCGCCGCCGCCGCGCGCTGAC
CGCCGAGTTGTGAAGCTTTGATTCATCCCGCGGCGATGCTTGCTTGCGGTTACAGATGTGTTTCCTTCCTGCTGTAGATC
AGC---ACTACTACTAGATGTAAAAATCGTTGGTTGCGAAATGAACTTGTACGAGTGAAATTTGCTGTAAATTGTGTGAA
G-ATCGAAGACGGTGTGATCCATCAACCTTCGTTTTAACTGTTCTGAATTTCTGATCTGATTTGCTGTGAAAATAGC---
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------CGCAACCCAACCAGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAACCGACGACC
CAACCCGACC----CGACCCTAGCGACGCACCTCAATGGCCATGGCCGCACGCCCACGCGGCTCGCCGCTCCTCCGCGCC
CTCGCCGGCACGAGGG---GGCCGCCGCGGGCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTGGACCG
CCACCTCTCCAAGAAGTCCC------------CCGCCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGCGGCTGA
CGAGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGGGCGACGCGGCTGTTCGAGTGGCCCGACGAGCGC
GGCGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGT
GGTCGCGCGGCTCCTCATCGGCGGCCGCGACGCCGTCGACCAGGCCCTGGAGCGCGTCGCCGACGCCTCGCGCCGCATGG
TCCAGGCCGAGGAGGCCAAGCGCCGCGGCGGGGCGTAGATCCCCCCACACCCCCACCCCGACTCGATGCGCCCCATGCTT
CCTCTTCTTCTTCTTCAGCTGCTGCTGCT------TATGTTTGTTAATTTTTGTTGTAAAATTTACTATGTACG------
-----------------AAATGAGTTACTTATGAAGCATTTCTTCCTTGTCA-------TGCCTAGTTCTATCTTTGCCA
AGAAATGTGACAGGAAATCAACTTTCATTTTGAATT---TCATCCATGTATGATGTATGTGTGTT----ATACAACTATA
CACTGAGTTACCAGTAATTTCAAAATTTTCAGTTGAGAAGAATTGACTTTGTACATCACATCATTGTCAGTTACAAAAGT
CAAAA-GGCGGCACAGCCGGCACTTGTTCCAATCAGTGTATAATCTCCGTTGCCAACAGCAAGACAAGCCCT-GCTCTTC
GATCCCGATGCGG------CGAGTACATGAGAACTGATCCCTCATGTATGTTTCCTGAAGATTGTACTGGTGCTGGCATC
ATCAGAATTCAGAAG-TTTTCTTTAGAGCAAAGGAGCAACAGAATTCAGAAGCTGTGTGAGGTTTGAATCTGTCACATA-
TAGCTGCAGATTGTCATGAAACCATATCTGCGTCCTGGTGCTCTCTTGCTTTTGCTGAAATGCATTCAGGC-TTGCCATC
AACGATAACCATTCTGTTCACCAGTAGTCACCACAGCAGCAAGAGCCATCAGAGAATTGGTGATAGATATTTGTGTCGCC
AACAACAATCCTCCGTCCTGAATATTTCGATATCAACTTCAGCGCATGATGGCAGTCGTTGCATATGCGCACGTTCTTCT
TGACAAGAATCGGGGTTCTGGCCTCCGATGATATAAGACCAAAGACGACAGCCAGCCTTACACTATGCTTGTTAGGCTCT
GTTGTTCTCCTCGACTCCAGAGAGGTTGGATCAGATTGATTCGTTGGGTCAACTATTTCTCCAATCTTTCCTGACAGAAA
GTTGGACACTTCATGAATCATCTTGCTCTGAGGGTGCATCATGTCCCC
>chr4B_164
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---CCCACGCCAAAC---CATCCAAATCACACGGCCACGACCGACCGATGGCCCAGCCACCGGCGACTCCGGCGATGGCG
GCGGCGTACGGGTGTGCGGCATGCGGCGCGGACCTGAACCTGTCCGCCTCCCACCTCTACCCGGCGGGGACCTACTTCGA
GGCGGGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGCC
CCTTCTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAACTGCGACGCCTGCGGCAAGCTCCTC
GGCCACGTCTACGACGACGGCCCTCCGCTCATGGAGGGCACAGGCCAGCTCGGGATGGGCCCCAGCCAGGTCGTCCCCCG
CCGGCCCAGGTACCGGATCAAGATCAAGGCCGTCACGGCCGCCGGTTCCTCCGCCTCCGCCGCCGCCGCCGCGCGCTGAC
CGCTGAGTTGAGAAGCTT-GATTCATCCCGTGACGATGCT----------------------------------------
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>chr4B_910
ACCCAACCAG----------------------------------------------------------------------
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------------------AGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAGCCGACGACC
CGACCCGACCGACCCGACCCACACGACGCACCACCATGGCCGTGGCCGCACGCGCCCGCAGCTCGCCGCTCCTCCGCGCC
CTCGCCGGCACGAGGCCACCGCCGCCGCGGCCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTGGACCG
CCACCTCTCCAAGAAGTCCCCCACCCCCTCCCCCGCCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGCGGCTGA
CGAGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGGGCGACGCGGCTGTTCGAGTGGCCCGACGAGCGC
GGCGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGT
GGTCGCGCGGCTCCTCATCGGCGGCCGCGACGCCGTCGAGCAGGCCCTGGAGCGCGTCGCCGACGCCTCCCGCCGCATGG
TCCAGGCCGAGGAGGCCAAGCGCCGCGGCGGGGCCTAGAT--CCCCCCACCCCCACCCCGACTCGATGCGCCCCATACGT
CCTCTTCTTCTTCTTCAGCTGCTGCTGCTGCTGCTTATGTCTCTTAATTTG-GTTGTAAAAGTCACTATGTACGAAGGTT
TGTGTGATGCTCACACAAAATGAGTTGCTTATGAAGCATTTCTTCCTTTTCA-------TGCCCAGTTCTATCTTTGCCA
AGAAATGTGACAGGAAATCAA-TTTCATTTTGGATTTGATGATCCATGTATGATGTATGTGTGTGTGCCATACAACTATA
CACCGAGTTACCTGTAATTTCAAAAAATTCAGTTGAGAAGAATTGACTTTGTACATCACATCATTGTCAGTTACAAAAGT
CAAAA-GGCGACG---------CTTCTTCCAATCAGTGTGTAACCTCCATTGCCAGCGGCAAGACAAACCCT-GTTCGTC
GAGCCGATGCGACGAGTCACGAGTACATGAGAGTTGATCCCTCATGTATGCTCCCTGAAGATTGTACTGGTGCTGGCATC
TGG---ATTCAGAAGCTTTTGTTTAGAGCAAAGGAGCATCAGAATTCAGAAGCCGTGCAAGGTCTGAATCTGTGACATA-
CAGCTGCAGCTTGTCATGAAATTATATCTGCACCCTGGCGTTCACTTGATCTTGCTGAAATGCTTTCAAGCTTTGCCATC
AACCATAACCATTCTGTTCACCAGTAGTCACCACAGCAGCAAGAGCCATCTGAGAATTGGTGATAGATATTTGTGTCGCC
AACAACAATTCTCCGTCCTGAATATTTCGATATCAATTTCAGCGCATGATGGCAGTCGTTGCATATACGCACATTCTTCT
TGACAAGAATTGGGGTTCTGGCCTCGGATGATATCAGACCAAAGACAACAGCCAGCCTCACACTATGCTTGTTAGGCTCT
GTTGTTCTCCTCGACTCCAGAGAGGTTGGATCAGATTGATTCGTTGGGTCAACCATTTCTCCAATCTTTCCTGACAGAAA
GTTGGACACTTCTTGAATCATCTTGCTCTGAGGGTGTGTCATGTCCCC
>SNPs
SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSS
SSS----------SS--------------------------------------------------S--S----------S
------------------------------------------------------------------S-------------
---S----------------------------------------------------------------------------
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-----------------------S-----------------------------S--------------------------
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------------------------S--------------------S-S----------------------------S---
--SSSS--------------------SS-----------------------------S-----S----SS--------SS
SS--------S-S-------SSSS-S-------------------------------S----------------S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
----------------------------------------------------------S---------------------
---S-------------S----------S---------------------------------------------S-----
----------------SSS------------S--SS-------------------------------------S------
----------------------------------------------S--------S------------------------
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------------------------------S-----------------S-------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------S-------------------------S------S----SS--
-S-------SS------------S------------------S---------SSSSSSS-----S---------------
------------------------S-------S-----------------------------------------------
---------------------------------------S------------------------S---------------
-----S-----S----------------------S---S---------------------------------S-------
------------S-----------------------------S-----------------------------------S-
--S-----------------S---------------S-----------------------S------------------S
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--------------------------------S-----------S-----S-----------------------------
S-----------------S-------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------------S--------------------------------------
------------S---------------------------S-------
>forward_909
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---------TCTGAATCATCGTGCTCCCG---------------------------------------------------
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>reverse_2474
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-------------------------------------------------------------------------GGGCTCT
GTTGTTCTCCTCG-------------------------------------------------------------------
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