>input_sequence_78769
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------ATGCCGGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCCGCGCTCCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCTGTCACAGCGGAGCGTCGT---CGACGTCGAGCTCGGCC
ACGGGTGCGCGGCCGCAGGCATCGACGAGGCCGTCCTAGCCGCGTACACGACCACGGTGTACTCCTCGGCGGG---GAGG
CGACGGGACGGACGCCAGATGGCTGCTGCCGACGCGTCGGCCGACGGTGACCAGCCGCCCGACGACACGGACACGGACAC
GCACACGACCTGCGCGGTTTGCCTGGCGGAGTACGCGGACGGCGACGAGCTCCGGCGGCTGCCCGGCTGCAAGCACGCGT
TCCCCCGGCTGTGCGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGTACGTCG---------------
---C------------------C------------------GCCTGCGGCCACCACCGATGACTCCTGA-----------
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>chr5A_1_TraesCS5A01G028100
ATCTATATATTATAGGGAGAAATCAAAAGCAAAAAAGAAATGGAAGAACACATACCTAAAGCCTCCCCTAGCACACCTCA
CAGGAAGCAGAGAAAACCCTAACCAGTGACACCTCGAAATCCCTGCAAAATAGATATCAACAGAAACAACAAATGAATAA
CTTAAAATAGCAAATGTATCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATAAGAGAGGAGAAGAGCAGTGAAGCAGAAGA---GACGACAGAGAGAGCGGCTTTCCTC
TACGGGCTGGGCTGCAGCTAAACGGGTGAAGGAATAG-------------------CCTCGGCCCAATAACGATACGACT
GACCCACTTCAAGGTTCAGTCGATTTTTACACAACCGAAACAACTCATGGTACAGAACGAATCACAGAACAAAATCAATG
GGTGAAAAATCGACTGACTCAAAGATCAAAAATCAGCTGACTGAAAAGTAGCTAAATTGGTACTGTATTTATATGTCCGG
GGCTGATGCCAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACGTGGCCGGCAGCTCGACGCACGCACG-----CA
CGGACAAATCACAAACCAATCATATACGTAGGTACATAGAAGCTGCACGGCC---AGGTTGTAGCAT-------------
---ACCATGCCGGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCCGCGCTCCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCTGTCACAGCGGAGCGTCGT---CGACGTCGAGCTCGGCC
ACGGGTGCGCGGCCGCAGGCATCGACGAGGCCGTCCTAGCCGCGTACACGACCACGGTGTACTCCTCGGCGGG---GAGG
CGACGGGACGGACGCCAGATGGCTGCTGCCGACGCGTCGGCCGACGGTGACCAGCCGCCCGACGACACGGACACGGACAC
GCACACGACCTGCGCGGTTTGCCTGGCGGAGTACGCGGACGGCGACGAGCTCCGGCGGCTGCCCGGCTGCAAGCACGCGT
TCCCCCGGCTGTGCGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGTACGTCG---------------
---C------------------C------------------GCCTGCGGCCACCACCGATGACTCCTGAACCGCCACGGC
GTAAGGTAGCATGTCGATCGGGACCATGAATGCATGC----CGTTGCCGTATAGCGGCGAGACCGAAATGCGGCGAAGTA
CA-TGGCATGTCTCGTACGAACAATT-----------------------------------------TAGAAATGTTCCG
TACGAAGCCGCCATGAATGTTGTAGAGCAGAGTCCGTGGGTAGGTCGTCATGCATTGGC-------------ATGTACCC
ATGTGAGACCATGTCCCGGTCAGCTAAGACAAGCTTAGCTTCGGCATTCATGTCCGTAGGAGAGCATA------------
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-----------GATGCATCCGACCGAGTTTGGTTATGTGTATTTCACAAAAAAA---TAT-ATTTTCAT-----------
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-------------------------------------------------TACTTATTTATTTTTTGCGAAAAAAACTTCC
AATCTATTCATCTTCAATCATGATAGTACAACGAACACCAGAAATAATAAACAGTTCATAAATAAAATCTACATCCAGAT
CCGTAGACCATCTAGCGACGACTACAAGCACTGAAGCGAGCCGAAGGCACGCTGCCGTCATCGCCCCTCCATCGCCGGAG
TCGGGCAAACTTTGTTGTAGTAGACAGTCGGGAAG---------------------------------------------
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-----------------TAAATGAATAACAAACCAACTCGAACAAATTTACACACATGACAAACCGCTGAGCAGTAACAT
CTATACCCAGAATTACCGATATACTCCATATGATCTGGCAACTTTTTCTT-AACCTGGCGAAACGTTGGCCATTTTATTT
AATCAACCAAAAGTGTATTTCACACTTGAATAAACATGGCGACAAAGGAGAGGAGGCGACAACTTGAATAGAGCC-----
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--------------------------------------------AGTGTATGGACCTCAAGCAAAGGAGAGGAGGCGACA
ACACAACAATGCGCCCAAAATA-----------------TACACCGTGCCTAGGCGTCATAATCACTGTTTCAACCCGTC
AGAATAGGGTTTTCATTCGTAGCTGCCACATCCCAGTCCACCCCATGCCTAAGAAAATGACTAACAACCCACCTAC----
-----CCGCCACCTTCAAACTAGATCCGAAAGAGGAAAAAAGAACAAATCAGAAACCCTAGCTTTTCTAGGTA
>chr1D_1
ATCTATAAATCATAGGGAGAAATCAAAAGCAAAAAAGAAATGGAAGAACACATACCTAAAGCCTCCCCTAGCAGACCTCA
CAGCAAGCAGAGAAAACCCTAACCAGTGACACCTCGAAATCCCTGCAAAATAGATATCAACAGAAACAACAAATGAATGA
CTTAAAATAGCAAATGAATCATACAGAAAAAAGAAATGAATTGGGGGGGCAATGAAGCACA-------------------
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-----------------------AAGCCTCCACGGTCAGAGGT-------------------------------------
---------------------------------------------------GGGGGGCAATGGGGGCAAAGAGCAGCGAA
GAGAGTGG------------------------------------------------------------------------
--------------------ATAAGAGAGGAGAAGAGGAGTGAAGCAGAAGAAGAGACGACAGAGAGAGCGACTTTTCTC
TACGGGCTGGGCTGCAGCTAAACGGGCGAAGAAATAGGATATCG---GGGTCGAGGCATCGGCCCAATAACGATACGACT
GATCCACTTCAAGGTTCAGTCAATTTTTACACAACCGAAACAACTCATGGTACAGAACGAATCACAGAACAAAATCAACG
GGTGAAAAATCGACTGACCCAAAAATGGAAAATCAGCTGACTGAAAAGTAGCTAAATTG---------------------
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>chr1D_1
ATCTATAAATCATAGGGAGAAATCAAAAGCAAAAAAGAAATGGAAGAACACATACCTAAAGCCTCCCCTAGCACACCTCA
CAGCAAGCATAGAAAACCCTAACCAGTGACACCTCGAAATCCCTGCAAAATAGATATCAACAGAAACAACAAATGAATGA
CTTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGCAATGGGGGCAAAGAGCAGCGAA
GAGAGTGG------------------------------------------------------------------------
--------------------ATAAGAGAGGAGAAGAGGAGTGAAGCAGAAGAAGAGACGACAGAGAGAGTGACTTTTCTC
TACGGACTGGGCTGCAGCTAAACAAGCGAAGGAATAGGATATCG---GGGTCGAGGCCTCGGCCCAATAACGATACGACT
GACCAACTTCAAGGTTCGGTCAATTTTTACACAACCGAAACAACTCATGGTACAGAACGAATCACATAACAAAATCAACG
GGCGAAAAATCGACTGACCCAAAAATGAAAAATCAGCTGACTGAAAAGTAGCTAAATTGGT-------------------
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>chr4B_1
ATCTATAAATCATAGGGAGAAATCAAAAGCAAAAAAGAAATGGAAGAACACATACCTAAAGCCTCCCCTAGCGCACCTCA
CAGCAAGCAGAGAAAACCCTAACCAGTGACACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAGCCTCCATGGTCAAACGT-------------------------------------
---------------------------------------------------G---------GGGGGCAAAGAGCAGCGAA
GAGAGTGG------------------------------------------------------------------------
--------------------ATAAGAGAGGAGAAGTGCAGTGAAGCAGAAGAAGAAACGACAGAGAGAGCGGCTCTTCTA
TACGGGCTGGGCTGCAGCTAAACGGGTGAAAGAATAGGATATCGTCTGGGTCGAGGCCTCGGCCCAATAATGATTCGACT
GACCCACTTCAAGGTTCAATCGATTTTTACACAACTGAAACAACTCATGGTACAGAACGAATCACAGAACAAAATCAACG
GCTGAAAAATCGATTGACCCAAAAAGGAAAAATCAGCTGACTGAAATGTAGCTAA-------------------------
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>chr5A_843
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----------------------------------------------------------------GTATTTATATGTACGG
GGCTGATGCGAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACTTGGCCG--AGCTCGACGCACGCACG-----GA
CA---------------AATCATATACC----TACATAGAAGCGGCACTCCC---GGGTTGTAGTATATGCTCCTGTGCT
GGCACCATGCCGGGCTCCACCGTGCTGCTGATCGGCGCCTCCGTGGCCGCGCTCCTCGTCATCTCCCTCCTCACCTTCCT
CTGCTCCAACAGGCGCCAGGCGCACCGCGCGCCACCGTCGCTGTCACAGCGGAGCGTCGTTGACGACGTCGAGCTCGGCC
ACGGGTGCGCGGCCGCAGGGATCGACGAGGCCGTCCTGCCCGCGTACACGACCACGGTGTACTCCTTGGCGGCGGCCAGG
CGACGTGGCGAAGGCCAGATGGCTGCTGCCGAACCGT------------------CGCCCGACGACACGGACACG---AC
GCACACGACGTGCGCGGTGTGCCTGGCGGAGTATGCGGACGGCGACGAGCTCCGGCGGCTGCCCGGCTGCAAGCACGCGT
TCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGCACGTCG---------------
---C------------------CTCCCGCCACGCGCGC---GCCTGCGGCCACCACCGATGACCCCTGAACCGCCACGGC
GTAAGGTAGCATGCCGATCGGGACCATGCATGCATGC----CGTTGCCGTATAGCGGCGAAACCGAAATGC---------
------CATGTCTCGTACGAACCCAAATGCTGCCGTTGCCATGACAAAGGCATGTAGTACGTGGCAGTAGAAATGTTCCG
TACGAAGCCGCCATGAATGCTCTAGAGCAGAGTCTGTGGGTAGGTCGTCATGCATCGGC-------------ATGTGCCC
ATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTATTAGAT-------------------------------------
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-------------------------------------------ACGTCCTGTCGTATTACCTCCGTCCGGATTTATTAGT
TTCTCTTGTATTTTGTGTCG------------------------------------------------------------
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------------------------------------GATTTTGACCACCTATATTACTGAAAAATATAAAAATATAAGAT
ACAAAAAGTACACCTTTGGATTTGTATTTGAAAGAACTTTTCAACAATATAAATTTTGTG--------------------
---------------------------------------ACACATAATTTACATTTTATTAGTTAAAGTTACAGATCAAA
CTTTAGCACAAAATAAGATGGGGCCTAATACTCCCTCCGTCCTATATAATAGTGTTCTTATATTATACTCTCTGCATTCC
ACAATTTAGTGCCCTCGCATTTTCCAACATCTAAGTTTGATCATAAATTTAATTAACGAGACTGACTGTGGCGGGAGCAA
ATATTATATCGCTGAATTCATATCGAAATAGCGAATTCAATGATATATTTTTTGCTCCTGCGC-TGTTGGTCTCGTTGAT
TAAATTTATAGTTAAATTTATATCTCAGAAAGCGCAGGCACATTACATTATGGAATGGAGGGAGTAGGAC-----GAGTA
CGCACTATTCGTGGTTTTAAATGAATAAGAAACCATCTCGAACGAATTTACACG--TGACAAACCGCTGATTAGTGACAT
CTACACCCTGAATCACCGATATG---CATATGATCTGGCAACCTTTT-TT-AACCTGGAAAAACATTGGCCGTTTTATTT
AATCAACCAAAAGTGCATTTCACACTTAAACAAATAAGATGGTTAGGAGTACAATAGTATCCCAATCTATCAAAGTATAA
GTTCTAAACTTGACATTTGTGCTCGTATTTTTGGGGTTTATTCCAGGCCTTGCGAAGATCTGTGTTCAGACGGATGATAC
ATTTCCGTCGACTACAAAGGCGTTTGTGGTGAGTGGTGACTAAGTCAATCTCAAGATGATGTGTCGGCTCAGTCTCTCAG
AAATGCTCGTAGGGATAAAGTGTATGTGTGTGGGCATTTATAGGGGTGAGTCTATGCTCGTGTATGTGAGCGACTTTAAT
TGTATTATATTAAAAAATAAAAATGGATAACTAACAAGATTATAACACACATAGCCCAGCCACCCTGGCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACACGATTCCTAGGTGTCATAATCACCGTTTCAACCAGTC
GGAATAGGGTTTTCATCCGTAGCTGCCACATCCCAGTCCACTCCATGCCTAAGGAAATGACTAACAACCCGCCTACCCGC
CACAACCGCCACCTTCAAACTAGATCTAAAAGAGGAAAAAAGAACAAATCAGAAACCCTAGCTT---------
>chr5D_862
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---TGATGCCAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACGTGGCCGGCAGCTCGACGCACGCACGACACGCA
CGAACAAATCACAAACCAATCAA--------GTACATAGAAGCTGCATGGCC---AGGTTGTAGTATATGCTCCTGTGGC
--CACCATGCCCGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCCGCGCTCCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCAGTCAGAGCGGAGCGTCGT---TGACGTCGAGCTCGGCC
ACGGGTGCGGGGCCACAGGGATCGACGACGCCGTGCTGGCCGCGTACACGACCACGGTGTACACCTCGG---TGGCGACG
CGACGGGAGGAAGATCATATGGCTGCTGCCGAAGCGTTGGCCGACGGTGACCAGCCGCCCGACGACACGGACACG---AC
GCACACGACGTGCGCGGTGTGCCTGGCGGAGTACGCGGACGGCGACGAGCTCCGGTGGCTGCCCGGCTGCAAGCACGCGT
TCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGCACGTCG---------------
---C------------------CTCCCGCCACGCGCGCGCCGCCTGCGGCCACCACCGATGACTCCTGAACCGACACGGC
GCAAGGTAGCATGCCGATCGGGACCATGCATGCATGC----CGTTGTCGTATGGCGGCGAAACCGAAATGCGGCCTAGTA
CAATGCCATGTCTCGTACGAACCCAAATGCTGCCGTTGCCATGACAAAGACATGTAGTACGTGGCAGAAGAAATGTTCCG
TACGAAGCCGCCATGAATGCTCTAGAGCAGAGTCCGTGGGTAGGTCGTCATGCATCGCCGCATCGGCATGTGATGTGCCC
ATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTATTAGCTTCGGGAAAATATCTAGTGCTACCAACCTTTAGGTGCT
ACCGTGATATAAGCTTCTGGGTCGTCGGATTCTCAGATCTAATGGCCTCAATAACTTTGCAACATTTGCAAAAAAGCCTA
TGAGAAGTCCAAAAATTGCGCATAGGTCGAGCAGATCCAACAACTCCCGGATGCCGTCCGATTTAAAAATCTGACGACCT
AGATGCCCGTATCACGGTAGCATTTAAGCCTCGGTAGCACTAGACATCCTGTCGTACTACCTCCATCCGGATTTATTAGT
CTTCCTTGTATTTTGTGCCAGATTTTTTTAGAAGAACAGGGAGGCCCCTCCCCGGTTCCATTATCGAATGAAACCAAAAG
GTTTTTACATCAGCTCACTGAGAGGAGCAGTTCAAAGGAAGACTGCGGCGAAAGGCCAACAAGTTTACATAATCAAAGCG
GCAAAGACACGGACCATAAGCGCCCACACACACTACATGCCTCAAATGCAGATCAGCTCCTGAGAGGCCTTGCGCGACTT
CAGCGGCGGTGCAGTCACCGCTTGAGGGGACCAGGCAGCCACCAGGGTCGAGGTTGGGCTCGACATCGTTGCTGCTTCAG
AGCGCTTCTTGGAGGGGGACGAAAAGCCCACTGCGTCGTCCGAGATCTTCATCTTGTTCCAAGGGGCCACCGGCGGGGCT
TCAGGGTTCTTCAGGATCAGCCACTGATCATCAGTGGTTGTCTCAGATGGGTCGCGAGGTGTGTTGTGAAGGCCTCCAGC
CTTTCCACAGCCCCATCCGAGGACAGTATCACCCAGCTCTTGATAGTTTTTAAAATCAGCCTCAGCACCTGCTTAATCGA
TGTCCATAAGGTGTTATTGAAAATCATAGAGTTCCTATATTTCCAGGTACACCAAAGTACAGCAGCATTAACAGTGTTGA
GGGCAGAATGTTTTTTGTTAGCAATCCAGAATTTGGCCACCGATTCAAAGTCAGTTCCAGTATCCACCCCGAAATGACTT
GAGATCAGAGGCCAAATCTGTCTAGAGATCACACAGCCAAAAAACAAATGCGAGCATGTTTCAACCTCAGAGCAGAACAC
ACAATCAAGTGGCTTAATAATTTGTCTTTACCTAAGGTTATCCCTAGTCATCAGCTTGTTGTTGGCAAGGAGCCACAAGA
AGACATGACTTTTTGGAGGAGTTTTAAGTTTCCACACTGAGGGGATGAAGACTGGTTGCACCCCCCTGAAGTTGATCACA
TGGTAGAGTGAACTTGTGGAGTAAACTCCTTTGTTCTCTAGTTGCCAGATTAGGGCATCAGTGTCATTGGTAAGGGTCAG
GCTACCAGCTATCTCTACTACTTGGTACCATTGCTCCATGAGCCTGTCATCAAAAATTCTTCTAAACGTGAGTTTAAGTT
GAGTACCATCCCATACCTCCCTGACACTTTTGGTTTGTTCATTGCATAATGAGTAGATAGGCCAGAGTTGCATTGCTAAG
GGAGAGGTACCAAACCAAGTATCTTCCCAAAATCTAATTTTCTCTCCTGACCCAATGTTCCACCTATAACCAAATTTCAG
TGCTTGGATGATGGTTTTCAAACCCTTCCAGAACCTAGAAGCACTGGGGGATAGGTTAGGAGCAAAAACATTAACTTTAC
CAACCATGTACTTGTGAACAATGATCATTTTCCAAGGTTTTCCTTCACTCTCATAATATCTTTTCACCCAGGAACCTAAC
AGACATAAGTTGACATCTTGGAGGTTTGGGATTCCCAAACCTCCAAATTCTTTCTTCATACACACCAACCTCCAGTTGGC
TAGGTGAAGTTTCCTATGGCCTTCAAAGTCATTCCACAAATAGTTAGCCATTTGGAAATTAATCATCTCAATGGCCCATT
TAGGGAACTTGAAGAAAGATAATAAGTAGATAGGGATACTGGCTAGGCAAGCCTGGATCAAAATAAGCCTACCTCTATAG
GAAAGGAGCTTACCTCTCCAGCTAGCAATTATTTTCATAATCTTATCTATCAGAGGTTGGATATCCTCTTTCCTAAGTTT
GTCATGGTGAAGGGGGATACCAAGATATTTAATAGGGAAGCACCCCCTTTGCAATCCAGGACAGAAAGGAAAGGCAGAAA
TTCAGAATCTACCATGTTAATTGGAATCAGCTCACTCTTAAAGTAATTGATCCTCATCCCAGAAACCTGCTCAAAAACGG
TGAGGACAGTTTTGAGGTTGGAGGCATGGGTAATGTTATTATCCAAAAAGAGAAGGGTATCATCAGCATATTGCAAACCA
ATGATCCCTCCAGTGCAGACTTCAGTGCACAGCCTAGCAATCAAGTTACATTAGCTACTTTGGACAGCATTTTAGTTAGC
ACATCTACTACTAAATTGAAGAGGAGAGGGGAAATAGGGTCTCCTTGCCTGAGCCCTTTCCCAGCTAAGAAGTTGCTTTC
AGTATTGTTAATTTTGATCCCAACAGAGCCATTATGAGTGATCTGTCGAATCCAGTCAATCCATTTACTACCAAAGCCTC
TCTTCTTAAGAAGGTCCAGGAGAAAACTAAGGTCTACTTTGTCAAAAGCTTTTTCATAATCTAGCTTCAGAACTAAGCCT
TGTTTTTCCCCAGAATGGACCGAGTGCACTACTTCATGTGCAGTTACTACACTTTCCAGGATGTATCTGCCTTTAAGGAA
GGCATATTGGTTACTAGCAATTAGCCTCTGCAGAATCCTAGTCAGCCTGTTAGTAAGGACCTTAGAGAAAATCTTAAAAC
TACAGTTGATCAGGCTGATAGGTCTAATTTTTTTCATAGAAGTAGCATCAGGTTCCTTAGGGATGAGAGTAAGCATGGCA
AAGTTGAGCCTACATATATCTAATTCCCCTTTATGGAAGTCATTGAACATGGCTATCAGGTCCGCCTTAATCCACTCCCA
AAAATGCTGATAGAAGAAGAAAGAATCCCATTTGGTCCAGGAGCACCATCAGGGTAGGAGTCAAAGACTGCTTTCTTTAC
TTCTTCTTCAATAAAAGGTGTTTCTAGGGCTTCATTCTCAGCAGGTGTGACTAGCTCATCTGCTGAGAAGAAGTCAGCGT
TTAGTGTGAAACCACTGCTGTGGTCTTTTTTAAACAGATTTTGACCATATATATTAATGAAAATATATAAAATATATGAT
ACAAAAAGTACATCATTCGATTTGTATTTGAAAGAACTTTTCAACAATATAA----------------------------
-----------------------------------------------TTTACAATTTATTAGTTAAA-TTACAGGTTAAA
ATTTAGCACAAAATAAGAT-GGGCCTAATACTCCCTCCGTCCTATATAACAGTGCTCTTATATTATACTCTCTCCATTCC
ACAATTTAGTGCGCTCGCGTTTTAAGACATCCAAGTTTGGTCATAAATTTAACCAATGAGACTGACTGTGACGGGAGCAA
AAATTATATCGCTGAATTCATATCGAAATAGCGAATTCAGTGGTATATTTTTTGCTCCCGCCGTTGTTGGTCTCGTTGGT
AAAATTTATGGTCAAACTTATATCTCAAAAAGCGCAGGCACACTACATTGTGGAATGAAGGGAGTAGGACGGAGGGAGTG
CGCACTATTCATGGTTTTAAATGAATAAGAAACCAGCTCGAACAAATTTACACA--TGACAAACCGCTGATCAGTGGCAT
CTATACCCTGAATTACCGATATA---CATATGATCTGGCAACCTTTTTTT-AACCTGGCAAAACATTGGCCATTTTATTT
AATCAACCAAAAGTGTATTTCACACTTAAACAAA----------------------------------------------
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>chr5D_864
ATA-----------------------------------------------------------------------------
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--------CCAGAGATCTGATTTGATCTCGACCTTCTCGACCGTGACGTCGCCGGCAGCTCGACGCACGCACG-----CA
CGGACAAA-------CCAATCATAGTAC-----ATATAGAAGTGGCACGGCAGCAAGGTTGCAGTATATGCTCCTGCCGC
--CAACATGCCAGGCTCCACCGTGCTGCTGATCAGCTGCTCCATCGCCGCACTTCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCAGTCAGAGCGGAGCGTTGT---TGACGTCGAGCTCGGCC
ACGGGTGCGGGGCCACAGAGATCGACGACGCCGTCCTGGCCGCGTACACGACCACGGTGTACTCCT---CAGCGGCGAAG
CGACGGGGGGAAGACCAGATGGCTGTTGCCGAATTGTCGGCCGACGGTGACCAGCCGCCCGACGACACGGACACGGACAC
GCACACGACGTGCGCGGTGTGCCTGGCGGAGTACGCGGACGGCGACGAGCTCCGCCGGCTGCCCGGCTGCAAGCACGCGT
TCCACCGGCTGTGTGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGCACATCGCCGCCCGCCACGCGC
GCAC------------------C------------------GCCTGCGGCCACCACCGATGACTCCTGAACCGCCACGGC
GTAAGGTAGCATGCCGATCGGGACCATGCATGCATGC----CGTTGCCGTATAGCGGCGAAACCGAAATGCGGCGTAGTA
CA-GGGCATGTCTAGTTCGAAC----------------------------------------------------------
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>chrUn_867
--------------------------------------------------------------------------------
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--------CCAGAGATCTGATTTGATCTCGACCTTCTCGACCGTGACGTGGCCGGCAGCTCGACGCACGCACG-----CA
CGGACAAA-------CCAATCATAGTAC-----ATGTAGAAGTGGCACGCAGCAAAGGTTGCGGTATATGCTCCTGCCGC
--CAACATGCCCGGCTCCACTGTGATGCTGATCTCCGGCTCCATGGCCGCGCTTCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACCGGCGCCAGACGCACCGCGCGCCGCCGTCGCACTCAGAGCGGTGCGTCGT---TGACGTCGAGCTCGGCC
ACGGGTGCGGGGCCACAGGGATGGACGACACCGTCCTGGCCGCATACACAACCACGGTGTACTCCT---CCGTGGCGAAG
CGACGAGGGGAAGACCAGATGGCTGTTGCCGAAGCGTCGGCCGACGGTGACCAGCCGCCCGACGACACG-----------
-CAGACGACGTGCGCGGTGTGCCTGGCGGAGTACGCGGACGCCGACGAGCTCCGCCGGCTGCCCGGCTGCAAGCACGTGT
TCCACCGGCTATGTGTCGACGAGTGGCTCCGGCGGCGGCCGAGCTGCCCGCTCTGCCGCACGTCG---------------
---C------------------C------------------GCCTGCGGTCACCACCGCTGACTCCTGAACCACCATGGC
GTCTGCTAACATGTCG----GGGCCGTGCATGCATGC----C-------TATAGTGGCGAAACCAAAATGCGGCATAGTG
CA-TGGCATGTCTCGTACGAACCGAAATGCTGCCGTTGCCATGACAATGACATTTAGTACGTGGCAGAAGAAATGTTCTG
TACGAAGCCGCCTTGA--------------------------------------------------------ATGTGCCC
ATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTAGCTTCGGCATTCATGTCCGTAGGAGAGCGTA------------
--------------------------------------------------------------------------------
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-----------CATGCATCCCACCGAGTTTGGTTATGTGTATTTCACAATTCCTTTTTAT-TTTATTAT-----------
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-------------------------------------------------TACTTTCTTTG--------------------
---------------------------------------TCTCATAATTTTAGAGCGTTTTTTACACCACGCTAGTGTAA
A-AAAACACTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCATATTATAGGACGGACGGAGTATTTATGTA------
--CACTATTTGCTGTTTTAAATGAATAAGAAACCAGCTCAAACAAATGTACACACGTGACAAACCACTGATCAGGAACAT
CTATACCCAGAATTACCGATATA---CATATGATCTGGCAACTTTTTCTTTAACCTGGCAAAATGTTGGCTGTTTTATTT
AATCAACCAAAAGTGTATTTCACACTTAAACAAACA--------------------------------------------
--------------------------------------------------------------------------------
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>chrUn_998
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---ACCATGCCCGGCTCCACCGTGCTACTGATCGCCGCCTCCATGGCCGCGCTCCTCGTCATCTCCCTCTTCACCTTCCT
CTGCTCCAACAGACGCGAGGCGCACCACGCGCCACCGTCGCTATCCCAGCGGAGCGTCGT---CGATGTCGAGCTCGGTC
ACGGGTGCGTGGCCACATGGATTGACGAGGCCGTCCTGGCCGCGTACACGACCATGGTGTACTCCT---CGGCGGCGAGG
CGGCGGGACGAAGGCCAGATGGCTGCTGCCGAAGGGTTGGCCGACGGTGACCAGCCGCCCGATGACACGGACACG-----
-CACACGACCTGCGTGGTGTGCCTGGCGGAGTACGCTGATGGCGACGAGCTCCGGCGGCTGCCCGGCTGTAAGCACGCGT
TCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCGACGGCCGAGCTGCCCGCTCTGCCGCACGTCG---------------
---C------------------T------------------GCCTGCGGGCACCACCGATGACTCCTGAACCGCCACAGC
GTAAGGTAGCATGTCGATCAGGACCATGCATGCATGC----CGTTGCCATATA---------------------------
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>chrUn_1234
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-----GGACGAAGGCCAGATGGCTGCTGCCGAAGCGTCGGCCGACGGTGACCAGCCGCCCGACGACACGGACACGGACAC
GCAC-CGACGTGCGCGGTGTGCCTGGCGGAGTACGCAGATGGCGACGAGCTCCGCCGGCTGCCCGGCTGCAAGCACGCTT
TCCACCGGCTGTGCGTTGATGAGTGGCTCCGGCGGCGGTTGAGCTGCCCGCTCTGCCGCACATCG---------------
---CCGTCCGCCACGCGCGCGTC------------------GCCTGCGGCCACCACCGATGACTGCTGAACCGCCACGGC
GTAAGGTAGCATGTCGATAGGCACCATGCATGCATGCACGCCGTTGCCGTATAGCGGCGAAACCGAAATGCGGCGTAGTA
CA-TGGC-------------------------------------------------------------------------
------------------------------------------------------------------------ATGTGCCC
ATGTGAGACCGTGTCCAGGTCAGCTAAAA-AAGCTTAGCTTCGGCATTCATGTCCGTAGGAGAACGTA------------
--------------------------------------------------------------------------------
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-----------GATGCATCCCACCGAGTTTGGTTATGTGTATTTCACAATTCTTTCTTTTGTTTATTAT-----------
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-------------------------------------------------TACTTCCTTTG--------------------
---------------------------------------TCTCATAATTTTAGTGCGTTTTTGACACCATACTAGTGTAA
AGAAAACACTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTATATTATAGGATAGAGGGAGTACTTATGTA------
--TACTATTTGTGGTTTTAAATTAATAACAAACCAGCTCAAACAAATTTACACACGTGACAAACCACTGATTAGTAACAG
CTATACCCAGAATTACCGATATA---CATATAATCTGGCAACTTTTTCTTTAACTTGGCAAAATGTTGGCCGTTTTATTT
AATCAACCAAAAGTGTATTTCACACTTAAACAAACAAGATGGTTAGGAGTAGAGTGGTATCCCAGGCTATCAGAGTTCAG
GTTCTAAACTTCATGTTGGTACTTGCATTTTTCTGAATTTA-----------------------TTCAGTGGGAGGAGAC
GTTTCCGTCGAGTACAAAGGCTTCTATGA-------TGACTAAGTCAATCTCAACATGATGTGTCGGCTCAGTCTCTCGG
ACGTGCTCATAGAGGTAAAGTGTGCGTGCGTGTGTTCATAGGGTGACTG---TATACTCATGTATGTGAGCAACTTCGAT
TATATTATATTAG-AAAACAAAATTGATATCAAACAAGGTTATAACACAAACAGGGACCCCCCCCCCCCACACACACATC
GTTGTGTGAAACATTGCCGAGGTTGCCTAGAAGCATCATGGTCATGACCCGTGAGTCTCCGACTTACTGTGGACGGTCAT
CAATGACACGACCCAACAAAAGCTACAAAATAATCACACCGGCCTCTGGCAAACAGTTGACAAATGCGCTAAAGATGAGT
CATCACCATTATGGATGATCTTTATTGCCACTCTGACTTTAATTAATGTGACGAAGGAAGCTGCAAAGATCCCGTGAACA
TATCGGAGATCAAGCCAATTACCAAGACCATGACATGACTCATCCCAACACATACACGAGCAAGTCGTAGTTCGCAAGTT
CGCCATTAGCAACCAATTCCAGAACGAATCCTTCAAGAAGGGCAACCAACAAAAATGTAGCCATCACCTGAACGGGGCCT
ATGGACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATCCCAACACATACAC
GAGCAAGTCGTAGTTCGCAAGTTCGCCATTAGCAACCAATTCCAGAACGAATCCTTCAAGAAGGGCAACCAACAAAAATG
TAGCCATCACCTGAACGGGGCCTATGGACCCCCCCCCTCCCCCAAGTGTATGGACCTCGAGCAAAGGAAAGGAGGCAACA
GCACAACAATGCACCCAAAATT-----------------TACACAACGCCTAGGCGTCATAACCACCGTTTCAACCAGTC
GGAATAGGGGTTTCATTCATAGCTGCCACATCCCAGTCAACTCCATGCCTAAGGAAATGACTAACAACCCACCTACATGC
CACATCCGCCACCTTCAAACTAGATCTGAAAGAGG-AAAAAGAACAAATCAGAAACCCTAGCTTCTAGGTA--
>SNPs
-------S--S---------------------------------------------------------------------
---S--------------------------------------------------------------------------S-
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
------------------S----S--S----------------------------------SSS------------S---
--------------------------------------------------------------------------------
---------------------------SSSS---------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-----------------S----------------------------------S-------
----------S-S-------------------S-----------------------------------------------
------------------S-------------------------------------------------------------
---S------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------S-------------------------------S--------------S----
----------------------SSSS------------------------------------------------------
-------------------S-S---------------------------------S--------------------S---
---------------------------S-------------------------------------S--------------
--------------------------------------------------------------------------------
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--------------------S----------------------------SS-SS-------S--S-S-------------
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------------------------------------------------------S---SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S-----SS---S--S--S-S-----SS----SSSSS-S
-SS---SS--SSSSSS--S-SSSS-S-SS---SSSS-SSS--S-SSSS--SS---SS-S--SSSSSSSS-SSS--SSSSS
S-SSSSS-SSSSSS-S-S-S-SS---SSSSSS------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-------------------S--------------S---------
-----------------------SSS---------------------------------S--------------------
---------------------------S--S-----S-SS-SSS-S-SSS--S-S-SS-SSS-SS-SSSSS--SS-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------S---------S-------S---
S-----------S--------S----------------------SS--------------------S---------S---
S----------------------------------------S-----------S--------------------------
--------------------------S-------------------------------------S-SSSSSSS
>forward_637
--------------------------------------------------------------------------------
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---------------------------------------------------------CGACAGAGAGAGCGGCTTTC---
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>reverse_6721
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ACACAACAATGCGCCCAAAA------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
