>input_sequence_78754
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-------------------------------------------------------------ATGAAGCAAGCTGCGGATG
GGGATGAATTGGCAGAGTTGTATGCAGAGATCACGGATAATCATCAAGCAACAACAAAGATCCGGTCTGAGTTAGATAAA
ATCAAGACAGATGTTGGAGCTATACAGACGCAACAAGTATATCTCACAGAAGTTGTCAGAGGAATGCAATCCGCAGTTCA
AGACCTTTCTCAACAACTGCAGATCATGTCTGAGGTGCTCAAAGCAATGATACCTGAACCATCAGATCAGCTGCCAGGAT
CCCAAACACAACCTGTAGTTCAACCATCAGCTGAGCAACAGCAACAACAAATGCCTCCAGTGAATCAAAGGACTGAATCT
CTTCGTCAGAAATTATCCAATGAACAAGAGGGCACTTGGCAAATTGGATTTCTGATGGCATATTTGCCTCCAGTCAGAAT
TGGAAATCGTTCTGCACCTCCAGGATTTGGGTACCTAATGTTGAAGTGTAAGTGGATTGCCTAG----------------
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>chr2D_1_TraesCS2D01G235400
TACTAGCTAGAAGTAGCAGCAGCCAGCAAGCACTCAGCCAAAACAGCAAGAACAGCACACCATCGGCCAGCACAATAGTA
CTCGGCCCAACACCACCAGTCCAACAACAGCAGCGAACCAGCACCAAACTAGCAACCCATGGACTAAGTAATGCAGCACC
CGCCCCCAAAGCCATCATGAATGAAGCTGAACGAAGCAGAAGTCTGCGGCAAGGAATCTGCAGCTGCATATCCATTCATG
GAACGGCAGAG---------------TAGAGGAGGTCAGCGGCGCTGAATGAAGACTTGCACTGCAGAGAAGATCAGCAT
GTCAGATCCAGAGCTCGCCTGAACCTGAAACTACTGTCAACGT-GCCTTCCGTTTCGTCAGTTATTGGATAGCCAAGATG
ATCGCAAGGCCCATTTACCTGAAACTATTCAGTTTCACCTGTTGTCACTAGTTTACCGTAA-----CACTTGTTGAGTAC
CTAGCCCAGCAGTATATAAGCGTGGGGCGTGCGCTGTGTTAGCCATTCATTGATCATTATCCTCTTAAGGACAAAATTAC
AGTATAGCAATACAAGTCAGGGTCTCTCTCTTCCGAGGTGAACCCTAGATACAATTTCACTTTCGTTTTCCATTTCTCAT
GATTTCACTGATCTGAGTAAAACAGGGATCTGCCAAATGGTATTCAGAGCTAGGTTAATCCTTGGAGGCATTTCGAGCGG
GGAGGCGCGGTGGTTTGCTTCTTGGTAAAATCCCACCCTCCACTCCCTTCTCGCGGTGGCGGCGTTTCTGTTGCTATGGT
GGCGTTGCGGCGGCGGTGATTTATTCGGACACAGAACAGGCGGCTGGAGACGGTTGCTGACGAATCCTTCGTCAGAGGTA
AAATCCCATGCTCTATCCTGTTCTGTGCGTTGATTTGGTGGCGAATCTTACGGCGGCGGTAGGATCCGGGCTCCGTCGGG
TTTCTCGACGAGTTCTAGTGTAAAATTCCTCTTCGGCTCATCTAAGATCAGTACAGGGCGTATGAAGCAAGCTGCGGATG
GGGATGAATTGGCAGAGTTGTATGCAGAGATCACGGATAATCATCAAGCAACAACAAAGATCCGGTCTGAGTTAGATAAA
ATCAAGACAGATGTTGGAGCTATACAGACGCAACAAGTATATCTCACAGAAGTTGTCAGAGGAATGCAATCCGCAGTTCA
AGACCTTTCTCAACAACTGCAGATCATGTCTGAGGTGCTCAAAGCAATGATACCTGAACCATCAGATCAGCTGCCAGGAT
CCCAAACACAACCTGTAGTTCAACCATCAGCTGAGCAACAGCAACAACAAATGCCTCCAGTGAATCAAAGGACTGAATCT
CTTCGTCAGAAATTATCCAATGAACAAGAGGGCACTTGGCAAATTGGATTTCTGATGGCATATTTGCCTCCAGTCAGAAT
TGGAAATCGTTCTGCACCTCCAGGATTTGGGTACCTAATGTTGAAGTGTAAGTGGATTGCCTAGCCATTTCCATCAGTTC
AGACTTTTGGTTGCGTTAGCTAGTGCATGAAGCTTAACATGGTATCAGAGCCAGGTTTTGAGTGCAAGTCCTGGCTTTCG
CAATTTATTCAAAAATTGTTGTTCCCCCCTTTGTGTCCATGTATAGGCCTCTTGAGCCATACCTCTGAGACTATTCACGT
GTTGACTTCCCGCGTCACACATGAGAGGGGGTGTTTAAGTGTACATGTGGATTGCTTAGCCCTTT-CATCATATCGGACT
TTTGGTTGCGTTGGCTAGTGCATGAAGCTTAACACCTAACACTCCTCAATCAGTTCATACTATGAGGAAGAAATGAGGAC
ACAGTTTTTAATTTCCATCACGAAAGGACCTTGTATGGATTTTCCTCGTTTTGGTGGGGGATAATCCAATGGGTTGGATA
CGGCAATGTGAGAAATATTTTCAAATGGCTGGCACTCCTGAAGAATATAACTATATAAGGTCCATATTGCAACAGTTATA
CTTTGTGGGGCAAGCAGACGTGTGGCTTAGGCGTTCAGGCCTGTTAAAGAAGAAACTCACATGGGAAAAATTCTGTGAAC
AAGTGATTCATAGTTATTCAGGATCTAGCAATCTGAAACTGACTGTTAATTTATGTGAAACAGAC--TGCTGATGTCAAT
TTCTCACATTGCCGCATCTGAAACTGACTCTGCTGTTTGAAGATGTAATGGCAGATGT----------AATCCAAATATT
TCAGAGGCATGGTTTATAAAGTACTATCTGAATGGGTTAAGAGAGGGAATAAAGTATCAACTTTGTCCTCTCAGGCCAGT
CAGTTTAATTAAAGCTCATTGGTTAGCAAGGGACATGGAACCCTTCCATCCCCCAAAGAAAATTGTTTCAGCTTATTATA
CAAGTAAACCAGCTTGAAACAACTTCTATAAACCAGCACAGCACACTGTTCCTACTGCAGGCAGGCAACCTGAACTCCTA
CAGTAATACCTCAACAGAGACCGAGGAAACTTGAAGT
>chr2B_1
TACTAGCTAGAAGTAGCAGCAGCCAGCAAGCACTCAGCCAAAACAGCAAGAACAGCACACCATCGGCCAGCACAATAGTA
CTCGGCCTAACACCACCAGTCCAACAACAACAGCGAACCAGCACCAAAATAGCAGCCCATGGACTAAGTAATGCGGCACC
CGCCCACAAAGCCATCATGAATGAAGCTGAACGGAGCAGAAGTCTGCGGCGAGGAATCTGCAGCTGCATATCCATTCATG
GAACGGCAGAGGTAGTCAGGCAATAATAGAGGAGGTCAGCGGCGCTGAATGAAGACTTGCACTGCAGACAAGATCAGCAT
GTCAGATCCAGAGCTCGCCTGAACCTGAAACTAGAGTCAACGTTGCCTTCCGTTTCGTCAGTTATTGGACGGCCAAGATG
ATCGCAAGGCCCATTTACCTGAAACTATTCAGTTTCACCTGTTGTCACTAGTTATTGTTACCGTTTCACTTGTCGAGTAA
CTAGCTCAGCAGTATATAAGCGTGGGGCGTGCACTGTGTTAGCCATTCAATGATCATTATCCTG-TAAGGACAAAAATAC
AGTATAGCAATACAAGTCGGGGTCTTTCTCTTCCGAGGCGAACCCTAGATACAATTTCACTTTCGTTTTCCATTTCTCAT
GATTTCACCGATCTGAGTAAAATAGGGATCTGTCAAATGGTATTCAGAG-------------------------------
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>chr2A_1
TACTAGCTAGAAGTAGCAGCAGCCAGCAAGCACTCAGCCAAAACAGCAAGAACAGCACACCATCGGCCAGCACAATAGCA
CTCGGCCCAACACCACCAGTCCAACAACAGCACCGAACCAGCACCAAACTAGTAACCCATGGACTAAGTAATGTGGCACC
CGCCCACAAAGCCATCATGAATGAAGCTGAACGGAGCATAAGTCTGCGGCAAGGAATCTGCAGCTGCATATCCATTCATG
GAATGGCAGAGGTAGTCAGGCAATAATAGAGGAGGTCAGCGGCGCTGAATGAAGACTTGCACTGCAGAGAGGATCAGCAT
GTCAGATCCAGAGCTCGCCTGAACCTGAAACTACTGTCAACGTTGCCTTCCGTTTTGTCAGTTATTGGACAGCCAAGATG
ATTGCAGGGCCCATTTACCTGAAACTATTCAGTTTCACCTGTTGTCACTAGTTATTGTTACCGTTTCACTTGTCGAGTAA
CTAGCTCAGCAGTATATAAGCGTGGGGCGTGCGCTGTGTTAGCCATTCATTGATCATTATCCTG-TAAGGACAAAATTAC
AGTATAGCAATACAAGTCGGGGTCTCTCTCTTCCGAGGCGAACCCTAGACACAATTTCACTTTCGTGTTCCATTTCTCAT
GATTTCACCAATCTGAGTAAAATAGGGATATGCCAAATCGTATTCAGAGCTAGGTTAATCCTTGGAGG------------
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>chr2B_654
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----------------------------------AAATGGTATTCAGAGCTAGGTTAATCCTTGGAGGCATTTCGAGCGG
GGAGGCGCGGTGGTTTGCTTCTTGGTAAAATCCCACCCTCCACTCCCTTCTCGCGGTGGTGGCGTTTCTGTTGCTGTGGT
GGCATTGCGGCGGCAGTGATTCATTCGAACACAGAACAGGCGGCTGGAGACGGTTGCTGACGAATCCTTCGTCAAAGGTA
AAATCCCATGCTCTATCCTGTTCTGTGCGTTGATTTGGTGGCGAATCTTACGGCGGCGGTAGGATCCGGGGTCCGTCGGG
TTTCTAGACGAGTTCTAGTGTAAAATTCCTCTTCGGCTCATCTAAGATCGGTACGTGGTGTATGAAGCAAGCTGCGGATG
GGGATGAATTGGCAGAGTTGTATGCAGAGATCACAGATAATCATCAAGCAACAATGAAGATCCGATCTGAGTTAGATAAA
ATCAAGACAGATGTTGGAGCTATATAGATGCAACAAGTATATCTCACAGAAGTTGTCAGAGGAATGCAATCCGCAGTTCA
AGACATTTCTCAACAACTGCAGATCATGTCTGAGGTGCTCAAAGCAATGATACCTGAACCATCAGATCAGCTGTCAGGAT
CCCAAACACAACCTGTACTGCAACCATCAGCTGAGCAATAGCAATAACAAATGCCTTTAGTGAATCAAAGGACTGAAGCT
CTTCGTCAGAAATTATCCAATGAACAAGAGGGCACTTGGCAAATTGGATTTCTGACGGCATATTTGCCTCCAGTCAGAAT
TGGAAATCGTTCTGCACCTCCAGGATTTGGGTACCTAATGTTGAAGTGTAAGTGGATTGCCTAGCCCTTTTCATCAGCTC
GGACTTTTGGTTGCGTTGGCTAGTGCATGAAGCTTAACATGGTATCAGAGCCAGGTTTTGAGGTCAAGTCCTGGCTTTTG
CAATTTATTCAAAAATTGTTGTTCCCCCCTTTGTGTCCATGTATAGGCCTCTTGAGCCATACCTCTGAGACTATTCATGT
GTTGACTTCCGGCGTCACACGTGAAAGGGGGTGTTGAAGTGTACATGTGGATTGCTTAGCCCTTTCCATCAGTTCGGAAT
TTTGGTTGCGTTGGCTAGTGCATGAAGCTTAACACCTAACACTCCTCAATCAGTTCATACTATGAGGAAGAAATGAGGAC
ACAGTTTTTAATTTCCATCACAAAAGGACCTTGTATGGATTTCCCTTGTTTTGGTGGGGGATAATCCAATGGGTTGGATA
CGGCAATGTGAGAAATATTTTCAAATGGCTGGCACTCCTGAAGAATGTAACTATATAAGGTCCATATTGCAACAGTTATA
CTTTGTGGGGCAAGCAGACATGTAGCTTAGGCGTTCAGGCCTGTTAAAGAAGAAACTCACATGGGAAAAATTCTGTGAAG
AAGTGATTCATAGTTATTCAGGATCTAGCAATCTGAAACTGACTGTTAATTTATGTGAAACAAACTGTGCTGATGTCAAT
TTCTCACATTGCCGCATCTGAAACTGACTGTGCTGTTTGAAGATGTAATGGCAGATGTCCAGGAAGATAATCCAAATATT
TCAGAGGCATGGTTTATAAAGTACTATCTGAATGGGTTAAGAGAGGGAATAAAGTATCAACTTTGTCCTCTCAGGCCAGT
CAGTTTAACTAAAGTTCATTGGTTAGCAAGGGACATGGAACCCTTTCATCCCCCAAAGAAAATTGTTTCAGCATATTATA
CAAGTAAATCAGCTTGAAACAACTTCCATAAACCAGCACAGCACACTGTTCCTACTGCAGGCAGGCAAACCTG-------
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>SNPs
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--------------------------------------------------------------------------S-----
-----S---------------------------S----------------------------------------------
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---------------------------------------------------------------------S----------
-----------------------------------------------------SSSSS--S------------S-----S
-----S---------------------------------------------------------SS---------------
------------------S-------------------S-----------------------------------------
--------S-------------S---------------------------------------------------------
-----------------------------------------------------------S---------------S----
---S----------S------S-----S----------------------------------------------S-----
----------------------------------------------------------------------S---------
-----S-------------------------------------------S----SS--S---------------------
----------------------------------S-------------------SS--------S---------------
------------------------S---S---------------------------------------------------
----S--------------------------------------------------------------------S------
-----------------S-S------------------S-----S-----------SS-------------------S--
-------------------------------------------------------S------------------------
------------------------------------------------------------------S---S------S--
S----------------S--------------------------------------------SS--------------S-
-----------------------------------------------------------------------------S--
----------S---------S---S----------S-----------------------------------SS-----S-
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---------------------S--------------------S---S---------------------------------
----------------------------------------------S---------------------------------
-------------------S---S-------------------------------------------------------S
--------------------------------------------------------------S-----------------
-----------------------------S--------------------------------------------------
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--------S-----S------------------------------S--------------------------S-------
--------S-----------------S-----------------------------------------S-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_599
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-------------------GGGTCTCTCTCTTCCGAGGT-----------------------------------------
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>reverse_2488
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-------ACCTCAACAGAGACCGAGGA----------
