>input_sequence_78753
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---------------------------------------------------------------ATGGCGCAGGGGCAGGA
GTCGTCGACG---CAGGCCGCCGCAGCGC------CAGCGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAGCGCGGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCTAGAG---CACCTCAAGGCCACCG------ATACGGC------CGCCCCCG
------CCGTCGAGGGGAAGACGAAGATCAAGG---CCGACG---TGGCCAGCCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGAC---TCCGCCGCCGCCG---------------CCG------CCACCGAGGCACCGACGGCCGAGGCGCC
GGCGAAGAA------GGCGGCGCCGAG------CAGGTGCATGGCGTGCAAGAAGAAGGTCGGGCTGCTGGGGTTCGCGT
GCCGCTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCACGCGTGCGACTTCGACTACAAGAAGGTCGAC
CGCGAGAAGATCGCCCAGCAGAACCCTCTGATCGCGCCGTCCAAGATCG---ACAAGATTTGA-----------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2D_1_TraesCS2D01G198000
TTCCAGCCCGGACATCCGGACAAGT-CAATCCAGAGAGCACCGTGACCAGCCCCGT---------------------CAG
CCCGGACATCCG---------------------GCTCCCCGTGAAGCCCCGGACATCCGGC-------------------
C-------------------CTCCCTGCCTGCGTGCAGTGCTTTTGGGCCGAGGCCCATGTG-CCCCTCCGCCC-TTAGA
CTATATATACTTC---CCCTCCACCTACGTTTTAGGGTTAGCAAAGGATTAGTTCATTT-GAGACAGAGCTTTGCTCATC
CA-TACGAATCTAC---AC---GAGAGAGATCGTGGCCCCTC--------------------TATGGAGAAGAT-CCCCT
T--GGAT---TCAAGACCCCCTCTTGGGTGGCCCC-------CCTTCAAGACCTCCTCTTGAAGATGAACC--TTACCTT
GTATCTTTCCCTTTGTTGTTCATGTATCTTGTGGATCTTGTGTGTTTGATTGTCTAGTGAATGTGTGATTG-AACTTGTT
CTTGA-------------GTGTTTCCCCTTGTGATTTCTCTCC-ATTCTTCCTCGTGTTCTTCGCGTTCTTAGTTGGGAT
CCGCTTCTTTCATGAAAGATCGGCCGTATAGGGTTTCACCCTACATCAATGCCGCCATGCAATGAGGACGAGGCCAGACT
CTCCGGCACGAGGTATGTGGAGCTCACCTCCA---------CCGACGACAAGGCGAACTCCAGTGGGCAGAAAATGACGT
GTCCGCTTTTTATCCAGTGATTGCGGTTGGATGGACTAAACACCACCAC----------CACATCTGGACGTGTCTGATA
AAGTTCGTTTTGGTTATCCGTGTTTGGAGTTGCTGTTGATAGATCAGAGTTG-AAATCTGTCACCGGGTCCGAATCTGCC
GACGACACGAACCCAAGTCCAAAGTCTAAACACGACAAGTTCTGGTCTGTCGTGGC----GGACCTTTTATAAGGCCGCA
GCAGGATGCCCTCGGGGCCTCGTCAAGAGAGAAACCACGCACGAGTACGA-GGGCAGCCAAACGCGAGATTCACATACAG
GAACGCGACGATC-----------GATCCTCTTCTTCGATC---AGATCGGTGCTCGTAGTAGATGGCGCAGGGGCAGGA
GTCGTCGACG---CAGGCCGCCGCAGCGC------CAGCGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAGCGCGGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCTAGAG---CACCTCAAGGCCACCG------ATACGGC------CGCCCCCG
------CCGTCGAGGGGAAGACGAAGATCAAGG---CCGACG---TGGCCAGCCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGAC---TCCGCCGCCGCCG---------------CCG------CCACCGAGGCACCGACGGCCGAGGCGCC
GGCGAAGAA------GGCGGCGCCGAG------CAGGTGCATGGCGTGCAAGAAGAAGGTCGGGCTGCTGGGGTTCGCGT
GCCGCTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCACGCGTGCGACTTCGACTACAAGAAGGTCGAC
CGCGAGAAGATCGCCCAGCAGAACCCTCTGATCGCGCCGTCCAAGATCG---ACAAGATTTGAAGGCAGAAGGGAGTCTA
AAACATGTACTACAGAG------TTTTTTCTAGGGTCATGTACATACTACAGTAGTTAGTAG-------TACTATCTTTT
GTCT---TTAGATGTTTCATCACGTACGCACTAGCTTC-T-AGGATGAAGAGAGTGATGTT--ATCTTTCTTGCTC----
---GTCGTCATGTATTCATACAGATCGGTGTAAAGTCATACAGATTGATGTCATCTTTTTTTTTGCGGGAATGTGTACGA
CGATCCTCCAGGCGTATTCTTTTGCGGGACTCGGCAGAATTGCCAGAATCGTTCATATTGGCGATTCTCAGATACACTAC
TGATTATGACAATTCTCAGAGATGATTCCTGGGAAAGAAACGAGTTCTTTTGTAATTTTGATTCCTGGGACCGTGATTCT
CCAGAATTGATCGAAAAGAACTGGCCCTATGTCTCGCTCGCACCACGCGTCCTCAAAATCTCCAACCTCGACCTGCCGTC
CATGCTGCGAAGTACGTCGGGTTGTGTACTTCCGGTACTGGCCGTGAGTCCTGACGTCGTTTGTGTCGTGCAGTTTAGAC
ACCGACTTCAGCTTCTGACACGCCGCCCGCTGGCGATGCGCACGTCTGAGGACTCTGTACTATTGCGCGCGCCGGGGAGG
CAATATCTGGCTCCTATTATTTTTTTAAACAAGGAAAAACTTGGGAACAACAGGTTCATCCGCCACGGGGCGTCCACCGC
CTCTGGCGCGTGACGCGTGTCCTATGTGTGGCTCGCACACTGCACTATTTTAACTATATTTTTGTTGTAATTTTTTCTGC
AACATCATCTGTGTTGTGAAAGTTCCTTCCGCAACACCTATGCTGCAAAAAGGGAAAGACGTAAGTTTTTTTCTACAACA
AGACCTCTGTTGCGAAAATAATTATGCAACAGGACCTATGTTACAAAAGGAAAAATCTACATCATAGCTTTGTTGCAAGT
GTTTTTGCAACAAGACTTGTGTTGCAAAAGAAAACTTACAACATGGTCTC
>chr2D_1
TTCCAGCCCGGACATCCGGACAAGT-CAATCCAGAGAGCACCGTGACCAGCCCCGTCAGCCCGGACTTCCGGCCTGCCAG
CCCGGACATCCG---------------------GCTCCCCGTGAAGCCCCGGACATCCAGC-------------------
C-------------------CTCCCTGCCTGCATGCAGTGCTTCTGGGCCGAGGCCCATGTA-CCCCTTCGCCCCTTAGA
CTATATATACTTC---CCCTCCACCTACGTTTTAGGGTTAGCAAAGGATTAGTTCATTT-GAGACAGAGCTTTGCTCATC
CA-TACGGATCTACTCCAT---GAGAGAGACTGCGGCCCCTC--------------------TACGGAGAAGATCCCCCT
T--GGAT---TCAAGACACCCTCTTGGGTGGCCCC-------CCTTCAAGACCTCCTCATGGAGATGAACC--TTACCTT
GTATCTTTCCCTTTGTTTTTCATGTACCTTGTGGATCTTGTGTGTTTGATTGTCTAGTGGATGTGTGATTG-GACTTGTT
CTTGA-------------GTGTTTCCCCTTGTGATTTCTCTCC-ATTCTTCCCCGTGTTCTTCGCGTTCTTAGTTGGGAT
CCACTCCTTTCGTGAAAGATCGGCCGTATAGGGTTCCACCCTACATCA--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chrUn_1
TTCCAGCCCGGACATCCGGACGAGT-CAATCCAGAGAGCACCGTGACTAGCCCCGT---------------------CGG
CCCGGACATCCG---------------------GCTCCCCGTGAAGCCCCGGACATCCGGCCCGACCCCCGGATATCCGG
C-------------------CTCCCTGCCTGCGTGCAGTGCTTTTGGGCCGAGGCCCATGTACCCCCTTCGCCCCTTAGA
CTATATATACTCCTTCCCCTCCTCCTAG---TTAGGGTTAGCAAAGGATTAGCTCATTT-GAGATAGAGCTTTGCTCATA
TA-TACGGATCTACTCCAC---GAGAGAGACCGCGGCCCCTC--------------------CACGGAGAAGATCACCT-
-----AT---TCAAGACCCCCTCTTGGGTGGCCCC-------A-TTCAAGACCTCCTCATGGAGATGAACC--TTACCTT
GTATCTTTCCCTTTGTTGTTCATGTAGCTTGTGGATCTTGTGTGTTTGATTGTCTAGTGGATGTGTGATTG-GACTTGTT
CTTGA-------------GTGTTTCCCCTTGTGATTTCTCTCT-GTTCTTCCCCGTGTTCTTCGTGTTCTTCG-TGGGAT
CCGCTCTTTTCGTGAAAGATCGGTCGTATAGGGTTCCACCCTACATCA--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr4A_3
--CCATCCCAGACATCCGGACCCCACCTATCCAGAGAGCTCCGAGACCGGCCAATC---------------------TAG
CTCGGACATCCG---------------------TCACCTCACGAAGGCCCGGACATCCA---------------------
C-------------------CCCCCTGCCTGCGTGAAGCGCATCTGGGCCGAGGCCCATGTA-CCCCTTCGCCCCTTAGA
CTATATATACTCC---CCCTCAACAAATGTTTTAGGGTTAGCAAAGTAGTAGCTCATTTAGAGACAGAGCTTTGCTCATC
CATTACGGATCTACTCCAC---GAGAGAGACCGCGAACCCTC--------------------TTCGGAGAAGAT-CCCCT
T--GGAT---TCAAGACCCCCTCTTGGGTGGCCCC-------C-TTCAATACCTCCTCATGGAGATGAACC--TTACCTT
TTATCTTTGCATTTGTTGTTCATGTACCTTGTGGATCTTGTGTGTTTGATTGTCTAGTGGATATGTGATTG-GACTTGTT
CTTGA-------------GTGTTTCCCCTTGTGATTTCTCTTC-GTTCTTCCCCGTGTTCTTCGTGTTCTTAGTTGGGAT
CTGCTCCTTTCATGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------AAGATCGGCCATCTAGGGTTC----
--------------------------------------------------------------------------------
-------------------------------------CACCCTACATCA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2D_7
------CCCGAAAATCCGGACAAGT-AAATCCAGAGAGCACCGTGACCAGCCGCGT---------------------CAG
CCCGGACATCCG---------------------ACTCCCCGTGAAGCCCCGGACATCCGGC-------------------
CAGACACCCGAACATCTGGCCCCCCTTCCTACGTACAGTGCCTCTAGGCCGAGGCCCATGTA-CCCCTTTGCCCCTTAGA
CTATATATACTCCTCCACCTCCTTCTAA---TTAGGTTTAGCAAAGGATTAGCTCATTTAGAGATAGAGCTTTGCTCATC
CA-TACGGATCTACTCCAC---GAGAGAGACCCCGG--CCTC--------------------TACGGAGAAGATCCACCT
T--GGAT---TCAAGACCCCTCACATGAAGATCCCCTCGTGGA-TTCAAGACCTCCTCACGGAGATGAACTAGTTACCCT
ATGTATCGTCCTTTGTTGGATTCGGATCGTCTATCTCTTTGTGTTTCGAGGATCTTGCACATGTGTGATCGCTTCTTGTC
TATTTGAGCGTTTCCTC------------------------TC-GTTTCCCCTCGTGTTCTTCGTGTTCTTCG-TAGGAT
CCCCTCCAATCATGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------AAGATCGGGCGTCTAGGGTTC----
--------------------------------------------------------------------------------
-------------------------------------TACCCTACATCA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2D_8
-------CCGGACATCCGGACAAGT-CAATCTAGAGAGCACCGTGACCAGCCCCGT---------------------CAG
CCCGGACATCCGGCCTGCCAGCCCGGGCATTCAGCTCCCCTTGAAGCCCCGGACATCCGGC-------------------
C-------------------CTCCCTGCCTGCGTGCAGTGCTTCTGGGCCGAGGCCCATGTA-CCCCTTCGCCCCTTAGA
CTATATATACTTC---CCCTCGACCTACGTTTTAGGGTTAGCAAAGTGATAGCTCATTT-GATAGAGAGCTTTGCTCCTT
GTACCAC--TCTACTCTTGAGAGAGAGAGACTACTACTCCTTTTGGAGGCCAAGACCTCCATCTAGGAGAAGATCCCGTG
GGATATATCATCAAGACCCCCTCTTGGGCAGCCCC-------C-TTCAAGACCTCCTCATGGAGATGAACT--TTACCTT
GTATCTTTGCTTTTGTTGTTCATGTACCTTGTGGATCTTGTGTGTTTGATTGTCTAGTGGATGTGTGATTG-GACTTGTT
CTTGA-------------GTGTTTCCCCTTGTGTTTTCTCTCC-GTTCTTCCCCGTGTTCTTCG----------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr5A_30
------------------------------CCAGAGAGCGCCAAGGCCAGCTCCTC---------------------TAG
CCCAGACATCCA---------------------GCTCCCCGTGAACCCCCGGACATCCGGC-------------------
C-------------------CTCCCTGCCTGCGTGCAGTGCTTCTGAGACGAGGCCCATGGA-CCCCTTCACCCCTTAGA
CTATATATACT---TTCCATCCACCTAGGTTTTAGGGTTAGCAAAGGATTAGCTCATTTTGTGTGAGAGGTTTGCTCATC
CACTTGGTTACCTTCTCCTCG-----GAGATCGT-G--CCTC--------------------CTCGGAGAAGATCCCCCA
AGCGGAT---TCAAGACTCCTTCACGGGAAGAAC-----------TCAAGACCTCCTCATGGAGAAGATAGTGCTACC--
-TGTATCGTCCCTAGTTGACTATGGATCTTGTATCTCTTTTGTGTTCGAGGTTCTAGCATATGTGTGATTG-TCCTTGTT
GGTTTGAGTGATTCTCTCGCGTTTTCCCTCGTGCTTCCCCTCATGTTTCCCCTCATGTTCTTCATGTTCCTCA-CGGGAT
CCGCTCCTTTCGTGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------AAGATCAGCCGTTTAGGGTTC----
--------------------------------------------------------------------------------
-------------------------------------CACCCTACTTCA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2A_546
--------------------------------------------------------------------------------
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-------------------------------------------------TGCCGCCATGCAATGAGGACGAGGTCGGACT
CTCCGGCACGGTGTACGTCGAGTTCACCTCCACCGACGACTCCGACGACAAGGCGAACTCCGATGGGCAGAAAATGACGT
GTCCGCTTTTTATTCAGCGACTGCGGTTGGATGGACTTCCCCCCGATCGCTATCCGGGACACATCTAGACGTGTCTGATA
AAGTTCGTTTTGGTTATCCGTGTTTTGAGTTGATGTTGATAGATCAGAGTTGGAAATCTGTCTCTGGGTCCGAATTTGGC
GATGACACGAACCCAAGTCCAAAGTCTAA-CACGACACGTTCTGGTCTGCCGCGGT----GGACCTTTTTAAGGCCGTGG
A-AGGATGCCCTCGGGGCCTCGTCAAGAGAGAAACCACGCACGAGTACGA-GAGCAACCAAACGCGAGACTCACATACAG
GGA-CGCGAAGCGATCGATCGATCGATCCTCTTCTTCGATCAGGT------------------ATGGCGCAGGGGCAGGA
GTCGTCGACG---CAGGCCGCCGCAGCGC------CAGCGCTGTGCTCGAACGGCTGCGGGTTCTACGGCAGCGCGGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCTGGAG---CACCTCAAGGCCACCG------ACACGGC------CGCCCCCG
------CCGCCGAGGGGAAGACGAAGATCAAGG---CGGACG---TGGCCAGCCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGAC---TCCGCCGCC---G---------------CCG------TCGCCGAGGCACCGGCGGCCGAGGCGCC
GGCGAAGAA------GGCGGCGACGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTCAGGCTGCTGGGGTTCGCGT
GCCGCTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCACGCGTGCGACTTCGACTACAAGAAGGTCGAC
CGCGAGAAGATCGCCCAGCAGAACCCTCTGATCACGCCGTCCAAGATCG---ACAAGATTTGAAGGCAGAAGGAGTTGAA
AAACATGCA-----GAG------TTTTTTCTAGGGACAATGTATATAGTTTTAGTTTACTCGTTGCCTTTACTATCTCTC
CTCT---TTAGATCTTTCC---CGTACGCACTAGCCTC-TCAAGTTGAAGAGAGTCGATGTTGATCTTTCCTGTTC----
---GTAGTCATGTATTCATACGGATTGGT---------------------------------------------------
--------------------------------------------------------------------------------
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>chr6B_836
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---------------------------------------TTCTGGTCACTCGGCGTAGCGGGACCTCTTAAAAGCCCACA
CGATGACGCCCCAGGGGCCTCGTCAAGAGAGAAGCCACGCACGGGGACGAAGAGCAACCGACCG----------------
--ATCGAGAAGCTGTT-----------GTTCCTTTTCTATCAGAAGATCAGTGCTGATAGCAGATGGCGCACGGGCAGGA
GTCATCGCCGACGCAGGCCGCCGCAGCGCTGT---------ACTGCGCGAACGGCTGCGGGTTCTACGGGAGCGCGGCGC
GACCAAGAATATGTGCTCCAAGTGCTACCGCGACCACCACCTCAAGGCCACCG------ACACGGCTGCGCCCGGCCCCG
------CCGTCGAGGAGAAGACGAAGATCAAGG---CCGACGACGTGGCCAACCTCGCCTTCAGCCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCCGCAGCT---GGTGCTGCCGAGGCGCCGG------CCGCCGAGACACCGGCGGCCGAGGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCCTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGGTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGGATGCGTGCGACTTTGACTACAAGAAGGTCGGC
CGT-AGAAGATCGCGCAGCAGAACCCTCTCGTCGTGGCACCCAAGATCCACAACAAGATTTGAAGGCGGAAGGAGTTCAA
AAGCATGTAAACAAGTTTT-------------------------------------------------------------
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--------------------------------------------------
>chrUn_847
--------------------------------------------------------------------------------
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-----------------------------------------------------CGTAGCGGGACCTCTTAAAAGCCCACG
GGATGACGACCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGAGGACGAAGAGCAACCGAACG----------------
--A----CAAGCGATCGATCG------CGTCCTTTTCGATCAGAAGATCAGAGCTGA---TAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGCACCGCAGTGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAACGCGGCG-
-ACCGAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCGACAT------GGT------TGCCCCCG
------CCGTCGAGGGGAAGACGATGGTCAAGG---CCGACGACGCGGCCAACCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---G---------------CCG------CCGCCGAGGTGCCGACCGCCGAAGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCCT
GCAGGTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGACTTCGACTACAA----------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr6B_847
--------------------------------------------------------------------------------
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-----------------------------------------------------CGTAGCGGGGCCTCTTAAAAGCCGACA
GGAGAACGTCCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGGGGACGAAGAGCAACCAAACG----------------
--ATCGAGAAGCGATCGATCG------CGTC-TTTTCGATCAGAAGATCAGCGCTGA---TAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGGGCCGCAGCGCACTGCGCAAACGGCTGCGGGTTCTACGGGAGCGCGGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCC------ACACGGCTGCCCCCGGCCCCG
------CCGTCGAGGGGAAGACGATGGTCAAGG---CCGACGACGTGGCCAGCCTCGCCTTCAGCCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---GGTGCTGCCGAGGCGCCGG------TCGCCGAGACACCGGCGGCCGAGGCACC
GACGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGGTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGGCTTCGACTACAAGAAGGCCGGC
CGTGAGAAGATCGCGCAGCAGAACCCTCTAGTCATGGCACCCAAGATCGACAACAAGATTTGAAGGCGGAAGGAGTTCAA
AAGCATGTA-----AAGAG-TTTTTTTTTCTAGGGACATGTACATATAG-------------------TTACCGTCTCTC
CTCTTTATTAGATCTTTAA---CGTACGCACTGGCTCTTT-AAGTTGAAGAGAGTTGATGTTGATCTTTCTTGTTA----
---GTAGTCATGTATTCATACAGATTGGTGTAAAG---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr6A_847
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------CGTAGCGGGACCTCTTAAAAGCCCACG
GGATGACGACCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGAGGACGAAGAGCAACCGAACG----------------
--A----CAAGCGATCGATCG------CGTCCTTTTCGATCAGAAGATCAGAGCTGA---TAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGCACCGCAGTGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAACGCGGCG-
-ACCGAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCGACAT------GGT------TGCCCCCG
------CCGTCGAGGGGAAGACGATGGTCAAGG---CCGACGACGCGGCCAACCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---G---------------CCG------CCGCCGAGGTGCCGACCGCCGAAGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCCT
GCAGGTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGACTTCGACTACAAGAAGGCCGGC
CGTGAGAAGATCGTGCAGCAGAACCCTCTCGTCGTGGCACCCAAGATCCAGAACAAGATTTGAAGGCACAAGGAGTTCAA
AAACTTGTA-----AAGCGTTTTTTTTTTCTGGGGACATGTACATA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr6A_847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CGTAGCGGGACCTCTTAAAAGCCCACG
GGATGACGACCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGAGGACGAAGAGCAACCGAACG----------------
--A----CAAGCGATCGATCG------CGTCCTTTTCGATCAGAAGATCAGAGCTGA---TAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGCACCGCAGTGCTGTGCACGAACGGCTGCGGGTTCTACGGGAACGCGGCG-
-ACCGAGAACATGTGCTCCAAGTGCTAGCGCGACCACC---TCAAGGCCACCGACAT------GGT------TGCCCCCG
------CCGTCGAGGGGAAGACGACGGTCAAGG---CCGACGACGCGGCCAACCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---G---------------CCG------CCGCCGAGGTGCCGACCGCCGAAGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCCT
GCAGGTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGACTTCGACTACAAAAAGGCCGGC
CGTGAGAAGATCGCGCAGCAGAACCCTCTCGTCGTGGCACCCAAGATCCAGAACAAGATTTGAAGGCACAAGGAGTTCAA
GAACTTGTA-----AAGCG-TTTTTTTTTCTGGGGACATGTACATA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr6A_847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CGTAGCGGGACCTCTTAAAAGCCCACG
GGATGACGACCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGAGGACGAAGAGCAACCGAACG----------------
--A----CAAGCGATCGATCG------CGTCCTTTTCGATCAGAAGATCAGAGCTGA---TAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGCACCGCAGTGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAGCGCGGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCGACACCGACACGGCTGCCCCCGGCCCCA
------CCGTCGAGGGGAAGACGAAGGTCAAGGAGGCCGCCGACGTGGCCAACCTCGCCTTAAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---G---------------CCG------CCGCCGAGGTGCCGACCGCCGAAGCGCC
GGCGAAGAA------G------CTGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCTT
GCAGGTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGGCTTCGACTACAAGAAGGCCGGC
CGTGAGAAGATCGCGCAGCAGAACCCTCTCGTCGTGGCACCCAAGATCCAGAACAAGATTTGAAGGCACAAGGAGTTCAA
GAACTTGTA-----AAGCG--TTTTTTTTCTGGGGACATGTACATA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr6D_847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CGTAGCGGGACCTCTTAAAAGCCCACA
CGATGACGCCCTCGGGGCCTCGTCAAGAGAGAAGCCACGCACGGGGACGAAGAGGAACCAAACG----------------
--A-CGTCAAGCGATCGATCG------CGTCCTTTTCGATCAGAAGATCAGTGCTGATATCAGATGGCGCACGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGGGCCGCCACGCTGTGCGCGAACGGCTGCGGGTTCTATGGGAGCGCCGCG-
-ACCGAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCGACAC------GGC------TGCCCCCG
GCCCCGCCGTCGAGGGGGAGACCAAGATCAAGG---CCGACGACGTGGCCAACCTCGCCTTCAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---GCCGCCGCCGAGGCGCTGA------CCGCCGAGACACCAGCGGCCGAGGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGGTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCAACTTCGACTACAAGAAGGTCGAC
CGTGAGAAGATCGCGCAGCAGAACCCTCTCGTCGTGGCACCCAAGATCCACAACAAGATTTGAAGGCACAAGGAGTTCAG
GAACTTGTA-----AAGCG--TTTTTTTTCTAGGGACATGTACATA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------
>chr2A_960
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------CGATCG------GTTCCTTTTGGATC---AGATCAGCGGCGA---TACATGGCACACGGGCAGGA
GTCTTCGACGT-----------------GGGGGCGCGCCGCTGTGCGCGAACGGCTGCGGGTTCTATGGGAGCGAGGCG-
-ACCAAGGGCATGTGCTCCAAGTGCTACCGCGAGCACC---TCAAGGCCACAGATGT------GGC------TGCCCCCG
------TCGTTGAGGGGAAGG------TCAATG---CCGACG---------ACCTTATCCTCGCCTTCAAGACGTCGGTG
AGCCTGCAGGAT---TCTACCGCT---G---------------TCGCTGCTGCTGTGGCGGCACCGGCGGCGGAGGCGGC
AGCGAAGAA------G------TCGGCGCCAAACAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGCTGCGGTGGTACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCACGCGTGCGGCTTCGACTACAAGAAGGTCGTC
CGTGAGCAGATCGCGCAGCAGAACCCACTCGTCGCGCCGTCCAAGCTCCGCAACAAGATTTGAAGGCAGGAG--------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr2B_960
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------CGATCG------GTTCCTTTTGGATC---AGATCAGCGGCGA---TACATGGCGCACGGGCAGGA
GTCGTCGACG---GAGGCCGCCGCTGGTGGCGCCGCGCCGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAGCGCGGCG-
-ACCAAGGGCATGTGCTCAAAGTGCTACCGCGACCACC---TCAAGGCCACAGGTGC------GGC------TGCCCCCG
------CCGTCGAGGGGAAGA------TCAATG---CCGACG---------ACCTCGTCCTCGCCTTCAAGACGTCGGTG
AGCCTGCAGGAC---TCTACCGCT---G---------------CCGCTGCTACTGTGGCGGCACCGTCGGCCGAGGCGCC
AGCGAAGAAGGCGGCG------CCAAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTCGGTTTCGCGT
GCCGCTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCACGCGTGTGGCTTCGACTACAAGAAGGTCGGC
CGTGAGCAGATCGCGCAGCAGAACCCTCTCGTCGCGCCGTCCAAGCTCCACAACAAGATTTGAAGGCAGCAGCAGTTGAA
AAACATGTGTACAG------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr2B_960
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------CGATCG------TTTCCTTCTCGATC---GGATCAGCGGCGA---TACATGGCGCACGGGCAGGA
GTCGTCGACG---CAGGTCGCCGACGGGGGCGGCGCGCCACTGTGCGCGAACGGCTGCGGGTTCTACGGGAACGAGGCA-
-ACCAAGAGCATGTGCTCAAAGTGCTACCGCGGGCACC---TCAAGGCCACAGGTGC------GGC------TGCCCCCG
------TCGTCGAGGGGAAGA------TCAAGG---CCGACG---------ACTTGATCCTGGCCTTCAAGACGTCGGTG
AGCCTGCAGGAC---TCTACCGCT---G---------------GCGCTGCTACTGTGGCGGCACCGTCGGCCGATGCGCC
TGCAAAGAAGGCGGCG------CCGAC------CAGGTGCATGGCGTGCAAGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGCTGCGGTGGCACCTTCTGCTCGCTGCACCGCTACGTCGACGGGCACGCGTGCAGCTTCGACTACAAGAAGGTCGGC
CGTGAGAAGATCGCGCAGCAGAACCCTCTCGTCATGCCGTCCAAGCTCGA---CAAGATTTGAAG---------------
--------------------------------------------------------------------------------
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>chr6B_998
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------------------------------------------------------------TAGATGGCGCAAGGGCAGGA
GTCGTCGCCGACGCAGGCCGCCGGCGCCGGGGCCGCAGCGCAGTGCGCGAACGGCTGCGGGTTCTATGGGAACGCAGCG-
-ACCAAGAACATGTGCTCCAAGTGCTACCGCGACCACC---TCAAGGCCACCGACAC------GGC------TGCGCCCG
GCCCCTCCATCGAGGGGAAGACGACGGTCAAGG---TCGATGACGTGGCCAACCTCGCCTCTAACCTCAAGACGTCGCTG
AGCCTGCAGGATCACTCTGCAGCT---GGTGCTGCTGAGGCGCCGG------CCGCCGAGACACCGGCGGCCGAGGCGCC
GGCGAAGAA------G------CCGAC------CAGGTGCATGGCGTGCAGGAAGAAGGTGGGGCTGCTGGGGTTTGCGT
GCCGGTGCGGCGGCACCTTCTGCTCGCTGCACCGCTACGTGGACGGGCATGCGTGCGGCTTCGACTATAAGAAGGCCGGC
CGTGAGAAGATCGCGCAGCAGAACCCTTTCGTCGTGGCACCCAAGATCGACAACAAGATTTGAAGGCAAAAGGAGTTCAA
AAACATG-A-----GAG------TTTTTTCTAGGGACATGTACATA--G-------------------TTACTATCTTTC
CTCT---TTAGATCTTTCA---CGTATGCTCTAGCTCTTT-AAGTTGAGGAGAGCCGATGTTGATCTTTCTTGTCAATTA
TTTGTAGTCATGTATTCATACAGATTGATGTAAA----------------------------------------------
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>chr2D_1001
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---------------------------------------------------------------ATGGCGCACGGGCAGGA
GTCTTCGACG---GAGGCCGCCGCCGGCGGCGCCGCGCCGCTGTGCGCGAACGGCTGCGGGTTCTACGGGAGCGAGGCG-
-ACCAAGGGCATGTGCTCAAAGTGCTACCGCGACCACC---TCAAGGCAGGAGATGT------GGC------TGCCCCCG
------CCGTCGAGGGGAAGA------TCAATG---CCGACG---------ACCTCGTCCTCGCCTTCAAGACGTCGGTG
AGCCTGCAGGAC---TCTACCGCT---G---------------CCGCTGCTACCGTGGCGACACCGTCGGCCGATGCGCC
AGCGAAGAAGGCGGCG------CCGAC------GAGGTGCATGGCGTGCAGGAAGAAGGTGGGGCTGCTGGGGTTCGCGT
GCCGCTGCGGTGGCACCTTCTGCTCGCTGCACCGGTACGTGGACGGGCACGCGTGCGGCTTCGACTACAAGAAGGTCGGC
CGGGAGCAGATCGCGCAGCAGAACCCTCTCGTCGCGCCGTCCAAGCTCCATAACAAGATTTGATGGCAGGAGGAGTTGAA
ACA-----------------------------------------------------------------------------
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>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------S-----------
--------------------------------------------------------------------------------
-------S--------------------------------------------------------S---------------
----------------------------------------------------------S--S------------------
-----------------------------------------------------------S------------S-------
--------------------------------------------------------------------------------
-----S-----------------------------S------------S------------------------S-S----
----------SS---S--S---S--------------------------------------SS-----------------
-------------S---S--S----------------SSS-S--SSSSS-----------------S-------------
-------------------------S------S-----------------------------S-S----------S--S-
--S--------------------------S-------S--------------S--S--------------S---S--S--
-S--------------------------------------------------S---S------------S----------
-S-SSSSSSSSSS------------------------------------S-----SS-----------------------
--------------------------------------------------------------------------------
------------------------------S-----------------------------S-------------------
--------------------------------------------------------------------------------
------------------------SSS---------------------------S-------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SSS--S-
---------SSSS----------------------S----------SSSSSSSSS---S-S------------------S
S------------S-----SSS--------------------S-S----------SSSSS-------------S------
-----S-------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1016
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------------------------------------AAGTTCTGGTCTGTCGTGGC------------------------
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>reverse_2254
--------------------------------------------------------------------------------
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-------------ACGTCGGGTTGTGTACTTCC-----------------------------------------------
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--------------------------------------------------
