>input_sequence_78720
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATGGCTTCCCAG
CTCTCCGCCATGACCTCCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGGCGACGCTGCCGTC
CTTGAGGAAGA---GGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAATATCGTAAGATCACACACA---T
ACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTACCATATGCGGATGCAGATCA
TGGTGACCACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACGGCGGGG
CTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACTCTCGCCGACACGCTCGCATGCGG
CTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr2B_1_TraesCS2B01G272300
AGGAACGTATGTTGTTCAATACCGGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGCCAGC
TTGTGTGATCCTTTTGTTCTTCTTCTAAAGAACCAACACATAAGAGCTAGTGGCCCTTGTGACTCTGTTTTTTTTTACAT
TTCTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATGAAATGTACATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAATTACAGCTTGCGCATGG
CCATGCCGTCATAATATCAGGTCATATTATTGATGATCAATCATTCCTCTTTATCACAGTGATGTCAGGATTGGTATTCA
GTGTGCTCTGAGGTACTACCGTCATGGTTGTGTATGTGACCTTACAACT-TGGAAGATGCGTCACACACTTTAGTTTCAT
TGGCAAATTCGTGCGTGCCACGTAAAACCAAGT-TTTTTTGTTTTGGATTTGCAGGTTGCAAATATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GTTATTTATTTACTCCCCCGTCCTAAAATTCTTGTCTTAAATTTGTCTAAATACGGATATATCAAGTCATGTTT
TAGTATTAGATACATCCGTATCTAGACGAATTCAAGACAAGAATTTTGGAACGGGGGGAGTATTTAACAGCAACGAAAAG
AGCTACTCCCTTCTTTTCATAATATAAGAGCGTTTTTGACACTACACTAGTGTTAAAATATAAAAAGCGCTCTTATAGTA
TGGGACGGAGGGAGTATTATTTTACTGAACTGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCAGCAAAAGAATAGC
GACAGACGGAGAGGAGCTAGACACGGTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCG
GTTGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGTTCACCACGCGATTCCCCGTGTGGCTCCCGCTCCACAAGATT
TAAGAAAGGAGCTCGTTCAGCATTGCGCCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGCCATGGCTTCCCAG
CTCTCCGCCATGACCTCCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGGCGACGCTGCCGTC
CTTGAGGAAGA---GGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAATATCGTAAGATCACACACA---T
ACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTACCATATGCGGATGCAGATCA
TGGTGACCACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACGGCGGGG
CTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACTCTCGCCGACACGCTCGCATGCGG
CTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAGA
ACCTTCCTTTTCCGTCGATAGCTGTTCTGCATCCGCATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTTGTGA
TTTGATGATGTGGTGTAGTACAATGTATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCGCCGCGCCGGTGTGGC
AACTGCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACATGGTGAAGATCGACTTGTGCTATAGAAAGAGCA
ACATAAAGTCCAAAAACTAAATTAGTACTCCCACTGTGAAGAAATATAAGATCGTTTACATCAGTAATTGATCTCACTAC
TTAGATCAGTTAGTGATCTAAACTATCTTATATTTCTTTATAGAGAGAGTAACAATAAAAGCGCAAAATAACCCGCGTAG
CCTCCTCTCACGGCTCGAGGCC--------------------------------CCCCTTCCTCACCCCGCCGCCACCA-
AGGTGCCGCCGACGAAGCTCGACTGGCTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGCGGCTGCTTCCCTAAGGGG
TCGCCTCGGTGCGGGCGTCGTCGGCTGGCGTTAGAGTCGTGC---ATATTGTGTACAAGGTAGGTTATAGTTAGACTCTG
CATGGTACGATGTGTAGACAGGGTATGTTGTGGTGTCCTAGTAGGACTCTTGTATCCTATAAATAGACGAAGTACTCCCT
CTGTTCCATATTACTCGTCGCTGATTTAGTACAACTTTGTACTAAATCAGTGACGAGTTATATGGAACGGAGGGAGTAAC
AACCTATGCCAACATAACAGGACATACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATGGAGAGGAGCATCC
ATAGTCAAGCCCAGGAATTTAGCCGATGTTCGGTGAACCTCGTTAGCAAATCTAAGTGCCGTGTCTCGTGTGA-TTGCTT
AGTCATCAGTGAATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGTAAGTTTCAAGGAGGTCGTGATTGTAGA-
>chr2D_1
AGGAACGTATGTTGTTCAATACCGGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATGAAATGTACATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCATG-
CCGTGCTGTTATAATATCAGGTCATGTTGTTGATGATCAATCATTC-TCATTATCACAGTGATGCCAGGATGGGTATTCA
GTGTGGA-----GTACTACCGTCATGGT---GTATGTGACCTTACAACTTTGGAAGATGCATCACAC--TTTATTTTCAT
TGGCAAATTCGTGCATGCCACGTAAAACCAAGA-TTTTTTGTTTTGAATTTGCAGGTTGCAAATATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GTTATTTATT----------------------------------------------------------------
------------------------------------------------------------TATTTAACAGCAACGAAAAG
AGCTA---------------------------------------------------------------------------
--------------TATTATTTTACTGAACCGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCAGCAAAAGAATAGC
GACAGACGGAGAGGAGCTAGACACGGTGGTGTTTCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCG
GTGGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCCGCTCCACAAGATT
TAAGAAAGGAACTCGTTGAGCATTGCACCTGAGCAATCGCAGCATCCACAACACACGAATCCGCAGCCATGGCTTCCCAG
CTCTCCGCCATGACCACCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGGCCACGCTGCCGTC
CTTGAGGAGGAAGAGGTCTCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGATCACACGCA---T
ACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTAC--TATGCGGATGCAGATCA
TGGTGACGACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACGGCGGGG
CTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACACGCTCGCATGCGG
CTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTAGACCAGATCATCGGCTAGA
ACCTTCCTTTTCCGTCGATAGCTGTTCTGCATCCACATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTTGTGA
TTTGATGATGTGGTGTAGTACA----ATGTATGTGTATGCATCTTTGGTTCAGCGGGACGTACCGCCGCGCCGGTGTGGC
AACTGCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACACGGTGAAGATCGTCTTGTGCTATAGAAAGAGCA
ACATAGAGTCCAAAAACTAAATTAGTACTCCCTCCGTGAAGAAATATAAGATCGTTTAGATT-------------ACTAC
TTAGATCAGTTAGTGATCT---------------TCTTTACAGAGAGAGTAACAATAAAAGCGCAAAATAACCTGCGTCG
CCTCCTCTCACGGCTCGAGGGAGAAACCAGCGACGCCTCCTCTTCCACCCCCCTCCCCTTCCTCCCCCCGCCGCCACCAG
AGGTGTTGCCGACGAATCTCGGCTGACTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGTGGCTGCTTCCCGGAGGGG
TCG-CCTCGGTGCGGCGTCGTCGACCGGCGTTAGAGTTGTGCCGAATATTATGTACGAGGTAGTTTATAGTTAGACTCTG
TGTCGTACATCGTGTAGACAGGGTATGTCGTGGTGCCCTAGTAGGACTCTTGTATCCTATAGACACACGAAGTA------
------------------------------------------------------------------------------AC
AACCTATGCCAACATAACATGACATACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATGGAGAGGAGCATCC
ATAGTCAGGCTCAGGGATGTAGCCGATATTCGGTGAACCTCATTAGCAAATCTCCGTGTCGTGCCTCGTGTGATTTGCTT
AGTTATCAGTGGATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGCTCGTAGATT-----
>chr2A_1
AGGAACGTATGTTGTTCAATACCGGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGTCAGC
TTGTTTGATCCTTTTGTTCTTCT---AAAGAACCAACACACAAGAGCTAGTGGCCCTTGTGACTCTG-TTTTTTTTACAT
GTCTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATGAAATGTATATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCATG-
CCATGCCGTCATAATATCAGGTCATATTGTTGATGATCAATCATTCCTCTTTATCGTAGTGATGTCAGGATTGGTATTCG
GTGTGCTCTGAGGTACTACCGTCATGGT---GTATGTGACATTACGACT-TGGAAGACGCATCACACACTTTATTTTCAT
TGGCAAATTCGTGTGTGCCACGTAAAACCAAGTTTTTTTTGTTTTGAATTTGCAGGTTGCAAATATACTCCCTTCGGTCC
TTTTTACTCCGCATATTAGAGTTGTGTCAAGTCAAATTTTGTAAACTTTGACTAAATTTATATTAAAAAATAACAACATC
TACAATACCAAATATATATACCATGAAACTACATTTCATAATGAATCCAATAATATTAATTTGACATTGTGAATGTTGAT
ACTTTTTTCTATAAATTTAGTTAAAATAGACATGCTTTGACTTTGAATAAAACTTATATACAGACTAAAAAGGATCGGAG
GAAGTAGTTATTTATT----------------------------------------------------------------
------------------------------------------------------------TATTTAACAGTAACGAAAAG
AGCTA---------------------------------------------------------------------------
---------------ATTATTTTACTGAACCGTTTCATGCCGGTGATGC-------------CGTCAGCAAAAGAATAGC
GACAGACGGAGAGGAGCTAGACACGGTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCG
GTGGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCGGCTCCACAAGATT
TAAGAAAGGAGCTCGTTGAGCATTGCACCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGCCATGGCCTCCCAG
CTCTCCGCCATGACCTCCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATAGCCACGCTGCCGTC
CTTGAGGAAGA---GGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGATCACACACATAGT
ACTACGTATACATGCGAATGGGTCAGGCATTGATTGTTTATTTGGTTAAAATAATTACTACTATACGCGGATGCAGATCA
TGGTGACGACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCTACGGCGGGG
CTCAAGTTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACACGCTCGCATGCGG
CTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAGA
ACCTTCCTTTTCCGTCCATAGCTGTTCTGCATTCGCATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTCGTGA
TTTGATCATGTGGTGTAGTACA----ATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCGCCGCGCCGGTGTGGC
AACTCCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACATGGTGAAGATCGTCCTGTGCTATAGAAAGAACA
ACATAGAGTCCAAAAACTAAATAAGTACTCCCTCTGTGAAGGAATATAAAATTGTTTAAATC-------------ACTAC
TTAGACCAGTTAATGATCTAAACGATCTTATATTTCTT--CACAGAGAGTAACAATAAAAGTGCAAAACAACTCGTGTCG
CCCCCTCTCACGGCTTGA-GGAGAAACCAGCGACGCCTCCTCTTCCACCCC--TCCCCTTTCTCCTCCCGCCGTCACCAG
AGGTGCCGCCGCCGAAGCTCGGCTGGCTTTGAGGAGCTTCTTTGGCCGTGTGGCGTGGTAGTGGCTGCTACCCGGAGGGG
TCG-CTCGGTGCGGGTGTCGTCGGCTGGTGTTAGAGTTGTGCTGAATATTGTGTACAAGGTAGGTTATAGTTAGACTCTG
CGTCGTATGGTGTGTAGACAGAGTATGTTGTGGTGTCATAGTAGGACTTTTGTATCTTATAGACACACGAAGTA------
------------------------------------------------------------------------------AC
AACCTATGCCAACATAACAGGACATACATGCAGGGGAGCTGGTGTGTGGTATTGTAGCGGTATCATGGAGATGAGCATCC
ATAGTCAGGCTCAGGGATGTAGCCGATGTTCGGTGAACCTTGTTAGCAAATCTCACTGTCGTGCCTCGTGTGA-TTGCTT
AGTCATCAGTGGATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGGTCGCAGATTGTTGA
>SNPs
---------------------------------------------------------------------------S----
----S------------------SSS--------------S--------------------------S------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S---------------S
----------------------------S---------------------------------------------------
----------------------------SSS-----------------------------S------------S------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------------S-------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------S--S---------S----------------------------
-----------------S--------S-----------------------------------------------------
--------------------------------------------------------------------S-----------
---------------------------------------------------------S----------------------
-------------------------------------------------------------S------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------SSSS------------------------------------------------------
-----------------------------------------------------------S--------------------
-----S--------------------------S-------------------------S---SSSSSSSSSSSSS-----
-----------------------S----------------S-------------------------------------S-
--------------------SS------------------------------------------S---------------
---------------------S---------------------------------------S-----------SS-----
---S---------------------------------S------------------------------------------
-S-S-----S---------------------------------------------------S-S-S--------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------------------------------------------------------------------
-------S--S----S--S----------------------------------S----S----S----------------
-----------S------------------------------------S------------------SSS-SSSSS-
>forward_148
--------------------------------------------------------------------------------
------------------------------------------------AGTGGCCCTTGTGACTCTGT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACTGGCTTTGAGGAGCTTCT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
