>input_sequence_78698
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-----------------------------------ATGGCGTCCAAGGCCTGCATCCTGGTCCTGCTCTTCGTTGCAGCT
CTTCTCCATACAGGTACGCAAGAACAATGTAATACTTGGTCGTCGTCGCAGTTTAATCTCACCGATCCTTGGATCTTATG
TGCCGTTGATGTGTCCACAGGTCATGCTATTGGCGACGCCGGGCCGTGCCAACTGGAGGACATCCGCGTCTCGTCGGTGT
TGACGGGGCGGCTGGTCCGGAATGTGCCGGAGTACAGCGTGACGGTGGAGAACACGTGCTCGTGCCCGCAGGGGGCCGTG
GTGATGTACTGCAACCTCGGCGAGGTGAACGCGGTGATCCCGGACACGACCAAGCTCCGCCTGCTCAGCCGAAAGCAAGG
GCACTGCCTCATCAACAGCGGCTGGCTGATCTTCAAGGACAAGCCCATAACGTTCACCTACGCCGCCAAGACGCAGCTCG
ACTTCACCCTCGATAACGCCTCGCCGGAGTGCCTGGTGTGA---------------------------------------
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----------
>chr5D_1_TraesCS5D01G103200
TGACTTTGTTCTGTTGATCTGCCATCAACAGGATCAGCTCGAAGAGCAGAAGCCTAGTGATGATTTCGGTAATTCAGCAG
TGTTGTTGCTTTTGGCTGTGAATAGTCATCTACTCCCTCCGTTCCGATTTATTCGTCGTGGTTTTAGTTCAAATTACGAG
TAAATCAGAACGGAGGGAGTATAAGTTAGATTGGCTAACCCATGATTTGGAAGATCTTAACCGTTTGTTCAGAAGGTATT
TGGTTCTGAAGCTGTTTAAGATCCATCAATTTGTCTGAATCTGTTTCAGATCTTGTTTTTTTCGGTGTTTGATATTTGTT
CATCATGTGTGATGCATTTCATACTGTCTGCTTTCTTTAGCTCGATTTCTGTTATCATTGTATTCATCATATATGTACAA
TTTGGTTGAATTCCTATTTAGAAGCTTTGTGTGGTTATTCAACCAATCCTATATATCCAAGTGATCCGGTGCGGATTTTT
GGGACCTAGGTCTAGGCGCACCCCTTTAGGCGAACCGTCCCTAGTTATCTCTT--GTCTAATCTCTG-----CCT-----
ACATTTGCATGCAATTAATTAGTTTACCTATGCATGTTAAATAGTCATGCATTAATTTATGGAAAGTGTTATCTACCGTT
GGACAGAGGATC--------------------------------------------------------------------
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-------------------------------------------------------ACGTTAATTATAGAGAGTA---TCA
TTCTTCGGACGTGAGAATCACATTAATTATGTGAAGTACTATCATTGAGCATTAGACGGGA-GGATCATGTTAATTATGG
AGAGAATATCATTTCC-TGAACGGGAGGATCACTAATAGCCCTGAAGATAGAAGGAATTAATGCACCGATTCTGTAGGAG
ATAATTTACTTACCGAACAACCTCACGACCTTAATTTTGTTAAGATAAAAAATAACACTGGTAAGATATTGCATATCATC
TCGGGATCTCTGTATGTATGAGCCGGGAGCTCTATATGTAGCTGGCCAAGCTACCCTAATCAATCTTCATCACATCAAAG
----------ACTACTCCTACATTA----CAGG-CATGGCGTCCAAGGCCTGCATCCTGGTCCTGCTCTTCGTTGCAGCT
CTTCTCCATACAGGTACGCAAGAACAATGTAATACTTGGTCGTCGTCGCAGTTTAATCTCACCGATCCTTGGATCTTATG
TGCCGTTGATGTGTCCACAGGTCATGCTATTGGCGACGCCGGGCCGTGCCAACTGGAGGACATCCGCGTCTCGTCGGTGT
TGACGGGGCGGCTGGTCCGGAATGTGCCGGAGTACAGCGTGACGGTGGAGAACACGTGCTCGTGCCCGCAGGGGGCCGTG
GTGATGTACTGCAACCTCGGCGAGGTGAACGCGGTGATCCCGGACACGACCAAGCTCCGCCTGCTCAGCCGAAAGCAAGG
GCACTGCCTCATCAACAGCGGCTGGCTGATCTTCAAGGACAAGCCCATAACGTTCACCTACGCCGCCAAGACGCAGCTCG
ACTTCACCCTCGATAACGCCTCGCCGGAGTGCCTGGTGTGATCGTAGCTTTTTTTTACGCAAACACACGCAACGTTATTA
CTTGGAAGCAAGAATGTTTAAAGGTACAGAAATAGGGTCGTAGGAATGACCAGGCCAAATATGGCGTCTTGTACCTAAAG
ACGACGTGTCCTTTGCAAGGCCATGGACCTTGAAATTAAAGTTTGTACGCTCATGAATAAAAAAGGCAACTGTCAAAAGA
TGATTTCTACTCCGCAATCCCTCTGATGATTGCTCCATAAGCACCCCGTGATCACTATGTTCCTGAGATTCAGATCTCCG
CTAGTGAAAAGCCTTCCCGACACACCAAAGCTTCTAAGCAAGATGGGTCCTGGATATCTTTGACAACAACTACATATGCT
CCAGTAATATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTTCAGGTTTTTTTTCGTCCCACCTCCCATGA-TTTT
TGTT-GGTACCTCCTCCCATCTTTGCTGGGTTTTTTT-CGTAGATTTTTT-TTCATCCCCTCCCCC-ACTTCATCGGTTT
ATTTTCGCGTCATCCTCTCACACAACAAAAAAA---ACTGAACAAATCAGAACTTTCCATACTGGCGCAAGTTATTTAGT
AATGTAGAATCAATCACGAACAATCTATAAAGATCAAATCTAAATTAATTAACCTTACCTTCAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCTCAATCATGTTGACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCCTTCTTATGACAAATATATGATATTCCCTTCCC
TCTCCGTTGTCGA-GCGTTTTTGATTCTTGAGGCCGATGCTTGGGCTGCGTCACTGGGTTGCGACGGTGCCGGAGGACAA
GGACGGCGAGGCCGGGTGCCGTGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GGCTGTGGCC
>chr5A_1
TGACTTTGTTCTGTTGATGTGCCATCAACAGGATCAGCTCGAAGAGCAGAAGCCTAGTGATGATTTCGGTAATTCAGCAG
TGTTGTTGCTTTTGGCTGTGAATATTCATC--------------------------------------------------
-------------------TATAAGTTAGATTGGCTAACCCATG----------------CCGTTTGTTCAGAAGGTATT
TGGTTCTGAAGCTGTTTAAGATCCATCAATTTGTCTGAATCTGTTTCAGATCTTGTTTTTTTCGGTGTTCGATGGTTGTT
CATCGTGTGTGATGCATTTCATACTGTCTGCTTTCTTTAGCTCGATTTCTGTAATCATTGTATTCATCATATATGTACAG
TTTAGTTGAATACCTATTTAGAAGCTTTGTGTGGTTATTCAACC--TCCTATATATCCAAGTGATCCGGTGCGGATTTTT
GGGACCTAGGTC---------------------------------TATCTCTT--GCCTAATCTCTG-----CCTCACCT
ACATTTGCATGCAATTAATTAGTTTACCTATGTATGTTAAATAGCCATGCATTAATTTATGGAAAGTGTTATCTACCGTT
GGACGGAGGATCTCTACTCCTAATGGACGAATTGGTTGAATAGTCCCCCCCCACTTTCAACCGGTTTATTTTCAACCGGT
TTTTCTTCGTCCCACCTCCCACCAGCCCCTCCCACCGGTTTTTCTCTTTTCTCGTCTGACCGGCAATATCCAACGTATTT
ATGGTAATCAATCATAATTAATCCACGTATAGTAATAAATCAATCCAGGTATGGTAAGGTCATAACTCAGGAAATTTTGA
ATATGGTAATTATATGGTAATAAATTTAAATTACCCCAAAGGCTATCAATCCAGGTATGGTAAGGCCATAACTCGGAAAA
TATCGAATATGGTAATAAATTTAAATTACCACCAGGTATGGTAAGGCTACCCACGTATAGTAATAAATCATATAGTAATA
AATCATAATTAATCCATGTATAGTAATAAATCAATCCAGGTATGGTAAGGTCATAACTCAGGAAATTTTGAATATGGTAA
TTATATGGTAATAAATTTAAATTACCCCAAAGGCTATCAATCCAGGTATGGTAAGGCCATAACTCGGGAAATATCGAATA
TGGTAATAAATTTAAATTACCACCAGGTATGGTAAGGCTACCCACGTATAGTAATAAATCATAATTAATCCACGTATAGT
AATAAATCAATCCAGGTATGGTAAGGTCATAACTCAGGAAATTTTGAATATGATAATTATATGGTAATAAATTTAAATTA
CCCCAAAGGCTATCAATCCAGGTATGGTAAGGCCATAACTCGGGAAATATCAAATATGGTAATAAATTTAAATTACTACC
AGGTATGGTAAGGCTATCGATCCAGGTATGGCACGCCCTCACCTGATCACCTATCACAATCTCCAGCCCCACACGCACCA
AAGAACCCACCCGGCACCAAACGCAGCTCCTCTCATCCCCTCGAGTAAACGCCGCCGCCGTCGTGCGATCTTCCTGACAC
AGACGCCGTCGTCGCCTCCTTCCCACCTACGGCGTCCCCCACGTCCATGGTGACGGCGCTCGCGTCCTACACTGACCCTC
CGCCTCATATAGGTTGGTCGTTGATGGAGTGGGATGTGCCGCTGCGGTTTGGGGAGGCGCAATCACAATCTGGTTGGGAT
CTCAGTGTGGAATCGTTCTCTGTGATGAAGGATGGCGCTGCCTCCCTGGCAAATGGGATCGGAGGAAGGGGCTCTACGTC
GTGAATGTCGGCGAGGCAGCGGCCGAAGGCGAGCCCGACGGTGAGCACGGGTGTTCGTCCCATGAAATAGGCGGCCACGA
AGGGCGGATCTGAGGCCACTCCAATCGCCGGTGGCCCTTCCTCCCATCGATCATCGCCTCCATTCTCTCTCTCCTCTAAA
TCTTTGTCGCCCCTGCCTGATTCTGGCCGACGCCATCCGGCTCTCGCATCGACCACCACCAGCACGGTTGCGGACGAGGC
ACAACCGCAGACGCCGCCGCCGCCATCCTCATCCACCTCCTCCACCATCCTTCCCAACTGTCGTCGGGGGCACCCGCCAT
CTGCGCTCTAGCCCACCCACTCCCTCCTATCCCCTCCCCCTGCCTGCCAGCCCCGTGATCCATCGCACAGATGGCAGGTA
CTACAGCGACCTCCTCCCCAGCGGATCCGGCCTCCTCCGATGGAGATCCATCCTGGGCACCGCCTTATTCTCATGCGTGC
ACGTCTATATCAACGTCTCCTTCCACCTCACCCGAGCCTTTACCTTCCCACCTCTGCTTCAGATCCACATCACTTTGCAA
GGTATGTGCTTGATTGTTCCGAACTGGATCGATGGATTGTGCAAGGTACTTTGGGTGTCGTCATTGATGACAATTGTCAC
GCCATGCTACCATCGGAGGGGTCCCTCATCGATGATTAGGGTCTTCCGAACTGCACGAGCTCCATTGAGAAGGATGTTTT
TAATTCTGGTTTTGCCTACATGCTTTCTTTGCCTGTATCTACTTAGCTAATGTCTTCTTATAGATAGTAGCTGCTGAAGT
GGTGATCAAAGTCGTTCACTATAAGGAAACAACCATGATAACAAAAGTGTATATTCCTTGACCTTTGACCTGAAGTACTT
TTTCATTAGAAACTTGCAACAGCCAGGCATTGAAGTTAGCAACAGCTTCGTACGTACTGAACTAATTTGCAGCAACACGT
ACTGAACTAAGTTAGGTTATGCTCATCGTTCCAACATGCTTAGTGATAACCACCTAGCAAGCTGATCAAACATGAAAGGC
TCTTCTCTAATTGTACACTTGCATAAATCTCAGATCTTGCAAATTACAGTATAACCATAAAAGTCATGCTTTGACTCCTA
TAGGGCCTTTTGCACTTTAATATGACTAATAGTTTGCCTTAATATCACAGATTGTATTACTACCTTTCTAAGTGAATGAC
ATTCAAGAAGGTCATTAAATAAAACCAAGAAATCCTTCTGGTATTGAAGTGTAGGAAAGTTGAGACTATAAAACCAAAAG
GTTATATTTACGTTTATTAGAGAAGGTTCTTTACTTTTTATAGGAAAACACAAAATGTTGCGATGTAGAGTCTAGGTGGT
GGACCTCCTTGATCCACTTGGTGGATGAGGGCGACTCCGGTCCTGGCACCCATAGTGCCAGTGATCCAAAAATCATAGGG
CCTGGATATAGCTCTAGCAGACGTATGCGGCTTGCGCATCGAGCTTGGTCGTCTCAAGCATGGAGATAGGCGAGTTGTAG
ACCAAGAGCTGGTACAGAGATAGGCGAGTTGTAGACAAGAGCTGGTGGGCAGCAAGAAACGCATGCACACCAAAGAACAA
ATCTGAGTCACATGCCTACTTTTATTGGTTTCTACAAAGAGCGGCTAGCTTAGATCTTAGACCAGTCGGTCACTGTCGAG
GTCGCCAAGGTGATCTTACAGCACCGCCGTGGAGATTTCTCATGATTTTATGTAGGCAAGCCGCAAGCGGTGGTGGTGAT
TGGCTGAGTGGTGTCGCTGCCTTGGGAAGAGACGAAGTGATGGTAAAAGTAAGCAGGATCCGATGATTCTTCCGTGGGGA
TAGCCAAAATCAAGATGTCGACTACAGACTCGTCGCAGACTTGCAGTGAACCTGGATGCGGCGAGCCTGATTTGTGGATC
GATGGCGGGTCTTGACTTTGTTAGGCTGGGATTGGATGGTTGCGGAGGGTGGTGTGCTTGGTTGGGTTTTCATGGAAGAA
TGTGGCCTCCTCGTGGATCTGGTCATGCCCATCCTAGAGAACATTGTGTCCCTAGCTCCCTCGAGGAGCAAGGACAGTGC
AAGCGGCAGCAGGGGGTAGGGGTAGATGTGGGGAGGGATGTCGGCGGCTGCTCGAGGTCATCATGATGAAACCCTTGACG
TCCCATCTTTATCAATGGAAGTGGAAGAGCACGAAGTCGAGATTGGATAGGAGTTTGAGTTCTTTTTGGCACCGATCGGT
TCCCCACTTTAGAGATGTATTTTTTTTGTGTGTGAGCAAACAGTGGGTTGATTCTAAAAGGGATAGTCACTTTTCAACAG
AAGTGCATGACGGACTAAAAATATGACCTTATTTTATTCGTTTGATAGATATCGTATTATTCGTTGTTGTTCGTTCGGTG
AAATTTCCTAATATTTGATTGTTGTGTTTCTAATTAGAGCACCCCATAATCACCCAATATGAGGGGATGATAAATGAAAG
ATACTGATTATAAATTTTGAAGAGCCCGTGGCAACGCACGGGCGTTATACTAGTTACGTTAATTAT--AGAGTG---TCA
TTCTTCGGACGGGTGAATCGCATTAATTACCTGAAGTACTATCATCGAGCATTAGACGTGAGGGATCATGTTAATTATGG
AGAGAGTATCATTTCTTCGAACGGGAGGATCACTAATAGCCCTGAAGATAGAAGGAATTAATGCACCGATTCTGTAGGAG
ATAATTTACTTACCGAACAAGCTCACGACCTTAATTTCGTCAAGATGAAAAATATCACCGGTAAGATATTGCATATCATC
TCGGGATCTCTATATGCACGAGCCGGGAGCTCTATATATAGCTGGCCAAGCTACGCTAATCAATCTTCATCACATCAAAG
CTTCTCCTGAGCTACCTCGTTCTTAGCTTCAGC-CATGGCGTCCAAGGCCTGCATCCTGATCCTGCTCCTCGTTGCAGCT
CTTCTCCATACAGGTACGCAAGAACAAGATAATACTTGGTCGTCGTCGCAGTTTAATCTCACTGATCCTTGGATCTTATG
TGCCGTTGATGTGTCCATAGGTCATGCTAGTGGCGACGCCGGGCCGTGCCAACTGGAGGACATCCGCGTCTCGTCGGTGT
TGACGGGGCGGCGGGTCCTGAATGTGCCGGAGTACAGCGTGACGGTGGAGAACACGTGCTCGTGCGCGCAGGCGGGCGTG
GTGATGTACTGCAACCTCGGCGAGGTGAAAGCGGTGATCTCGGACACGACCAAGCTCCGCCTGCTGAGCCGGAAGCAAGG
GCACTGCCTCATCAACAGCGGCTGGCCGATCTTCAACGGCAAGCCCATAATGTTCACCTACGCCGCCAAGACGCAGCTCG
ACTTCACCCTCGATAACGCCTCGCCGGAGTGCCTGGTGTGATCGTAGCTTTTTATTACACAAACACAAGCAACTTTATTA
CTTGGAAGTAAGAATGTTTAAAGGTACAGAAATAGGGTCGTAGGAATGACCAGGCCAAATATGGCGTCCTGTACCTAAAG
ACGACGTGTCCTTTGCAAGGCTATGCGCCTTGAAATTAAAGTTTGTACGCTCATGAATAAAAA-GGTAACTGTCAAAAGA
TGATTTATACTC--CAATCTCTCTGATGATTGCTCCATAAACACCCCGAGATCACTATGTTCCTGAGATTCAAATCTCCG
CTAGTGAAAAGCCTTCCCAACACGCCAAAGCTTCTAAGCAAGCTGGGTCTTGGACATCTTTGACAACAACTA--------
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>chr5B_1
TGACTTTGTTCTGTTGATCTGCCATCAACAGGATCAGCTCGAAGAGCAGAAGCCTAGTGATGATTTCGGTAATTCAGCAG
TGTTGTTGCTTTTGGCTGTGAATATTCATC--------------------------------------------------
-------------------TATAAGTTAGATTGGCTAACCCATGATTTGGAAAATCTTAACCGTTTGTTCAGAAGGTATT
TGGTTCTGAAGCTGTGTAAGATCCATCAATTTGTCTGAATCTGTTTCAGATCTTGTTTTTTTCGGTGATCGATGATTGTT
CATCATGTGTGGTGCATTTCATACTGTCTGCTTTCTTTAGCTCGATTTCTGTAATC-----ATTCATCATATATGTACAA
TTTGGTTGAATACCTATTG-GAAGCTTTGTGTGGTTATTCAACCAATCCTATATATCCAAGTGATCCGGTGCGGATTTTT
GGGATCTAGGTCTAGGCACACCCCTTTAGGCAAACCGTCCCTAGTTATCTCTCTCGCCTAATCTCTGCCTCACCT-----
ACATTTGCATGCAATTAATTAGTTTACCTAAGCATGTTAAATAGTCATGCATTAATTTATGGAAAGTGTTATCTACT---
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---------------------------------------------------------GTTAATTATAGAGAGTACTATCA
TTCTTCGGATGGGAGAATCA----------------------------------------------CATGTTAATTATGA
AGAGAATATCATTTCTTTGAACGGGAGGATCATTAATAGCCCTG--GATAGAAGGAATTAATGCACCGATTCTGTAGGAG
ATAATTTACTTACCGAACAATCTCACGACCTTAATTTCGTTAAGATAAAAAATAACACTGGTAAGATATTGCATATCATC
TCGGGATCTCTGTATGTATGAGCCGGGAGCTCTATATATAGCTGGCCAAGCTACCCTAATCAATCTTCATCACATCAAAG
CTTCTCCTGAACTACTCCTACATTA----CAGGGCATGGCGTCCAAGGCCTGCATCCTGGTCCTGCTCTTCGTTGCAGCT
CTTCTCCATACAGGTACGAAAGAACAATGCAATACTTGGTCGTCGTCGCAGTTTAATCTCACCGATCCTTGGATCTTATG
TGCCGTTGATGTGTCCACAGGTCATGCTATTGGCGACGCCGGGCCGTGCCAACTGGAGGACATCCGCGTCTCGTCGGTGT
TGACGGGGCGGCTGGTCCTGAATGTGCCGGAGTACAGCGTGACGGTGGAGAACACGTGCTCGTGCCCGCAGGCGGGCGTG
GTGATGTACTGCAACCTCGGCGAGGTGAACGCGGT---------------------------------------------
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>chr2D_1853
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-------TATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTCCAGGGTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTG--G-TACCTCCTCACATCTTCGCT-GGTTTTTTT-CGTAGATTTTTT-TTCATCCCCTCCCCCCACTTCATCGGTTT
ATTTTCGCGTCATCCTCTCACACAACAAAAAAA---AATGAACAAATCAGAACTTTCCATACTGGCGCAAGTTATTTAGT
AATGTAGAATCAATCACGAACAATCTATAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCCCAATCACGTTAACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCCTTCTTATGACAAGTATATGATATTCCCTTCCC
TCTCCGTTGTCGA-GCGTTTTTGATTCTTGAGGCCGATGCTTCGGCTGCGTCACTAGGTCGCGACGGTGCCGGAGGACGA
GGACGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GG--------
>chr6D_1853
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-------TATCTCTACTTCTAATGGAGCAGTTGGTAGTCTCGCTTCCAGGGTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTTT-GGTACCTCCTCCCTCCTTTGCTGGGTTTTTTTTCGTAGATTTTTT-TTCGTCCCCTCCC-CCACTTCATCGGTTT
ATTTTCGCGTCACCCTCTCACACAACG--AAAGAAATCTGAACAGATCAGAACTTTCCATACTGGCGCAAGTTATTTAGT
AATGTAGAATCAATCACGAGCAATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTCGCGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCAAGGGAGCAGTAAATAAACTCCCTTTCTTATGACATGTATATGATCTTCCCTTCCC
TCTCTGTTGTCGA-GCGTTCTTGATTCTCGAGGCCGATGCTTGGGCTGCGTCACTGGGTCGCGACGGTGCCGGAGGACGA
GGACGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GACTGTGG--
>chr3D_1853
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-------TATCTCTACTCCTAATGGAGCAGTTAGTAGTCTCGCTTTCAGGTTTTTTTTCGTCCCACCTGCCATGG-TTTT
TTT--GGTACCTCCTCCCACCTTCGCT-GGTTTTTTTTCATAGATTTTTT-TTCGTCCCCTCCCCCCACTTCATCGGTTT
ATTTTCGCGTCACCCTCACACACAATG--AAAGAAATCTGAACAGATCAGAACTTTCCATACTGGTGCAAGTTATTTAGT
AATGTAGAATCAATCACCAACAATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACACCCTTTCTTATGACATGTATATGATCTTCCCTTCCC
TCTCCGTTGTCGA-GCGTTCTTGATTCTCGAGGGCGAGGCTTGGGCTGCGTCACTGGGTCGCGATGGTGCCGGAGGACGG
GGACGGCGAGGCCGGGTGCCGCGGCACCGCATTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCAGCTTCCCTGGCCCT
GGCCGTGGCC
>chr5D_1854
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--------ATCTCTACTCCTAATGAAGCAGTTGGTAGTCTCGCTTCCA-GGTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTTTTGGTACCTCCTCCCATCTTCGCTGGGTTTTTTTTCATAGATTA-TT-TTCGTCCCCTCCCACCACTTTATCGGTTT
ATTTTCGCGTCATCCTCTCACACAACG--AAAGAAATCTGAACAGATCAGAACTTTCCATACCGGCGCAAGTTATTTAGT
AATGTAGAATCAATCACGAACAATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATATTTGATTTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTTACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCTTTCTTATGACATGT-TATGATCTTCCCTTCCC
TCTCCATTGTCGA-GCGTTCTTGATTCTCGAGGCTGATGCTTGGGCTGCGTCACTGGGTCGCGACGGTGCCGGAGGACGA
GGACGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTAGCCCT
GGCCGTGGCC
>chr4D_1854
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--------ATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTTCAGGTTTTTTTTCGTCCCACATTTCATGGTTTTT
TTT--GGTACCTCCTCCCATCTTCGCT-GGTTTTTTTTCGTAGATTTTTT-TTCATCCTCTCCC-CCACTTCATCGGTTT
ATTTCCGCGTCATCCTCTCACACAACAAAAAAAAAAACTAAACAAATCAGAACTTTCCATACTGGCGCAAGTTATTTAGT
AATGTAGAATCAATCATGAACAATCTATAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCTCAATCACGTTGACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCCTTCTTATGACAAATATATGATATTCCCTTCCC
TCTCCGTTGTCGAGGCGTTTTTGATTCTTGAGGCCGATGCTTGGGCTGCGTCACTGGGTCGCGACGGTGCTGGAGGACGA
GGACGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GGCTGTGGCC
>chr2D_1854
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--------ATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTTCAGGTTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTT--G-TACCTCCTCCCACCTTCGCT-GG-TTTTTTTCGTAGA-TTTTT-TTTGTCCCCTCCCCCCTCTTCATCGGTTT
ATTTTCGCGTCACCCTCTCACACAACG--AAAGAAATCTGAACAAATCAGAACTTTCCATACTGGTGCAAGTTATTTAGT
AATGTAGAATCAATCACGAACAATCTCTAAAGA-CAAATCTAAATTAATTAACCTCACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAGAAAAATCGCTCAATCACGTTAACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAATAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCTTTCTTATGACATGTATATGATCTTCCCTTCCC
TCTTCGTTGTTGA-GCGTTCTTGATTCTCGAGGCCGATGCTTGGGCTGCGTCACTGGGTCGTGATGGTGCCGGAGGACGA
GGATGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCACGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GGTCGTGGCC
>chr1D_1854
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--------ATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTT--GGTACCTCCTCCCACCTTCGCT-GGTTTTTTTTCGTAGA---TTTTTTCGTCCCCTCCCCCCACTTCATCGGTTT
ATTTTCGCGTCACCCTCTCACACAACG--AAAGAAATCTGAACAGATCAGAACTTTCCATACTGGCGCAAGTTATTTAGT
AATGTAGAATCAATCACGAACAATCACTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATATTTAATTTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAATTCCCTTTCTTATGACATGTATATAATCTTCCCTTCCC
TCTCCGTTGTTGA-GCGTTTTTGATTCTCGAGGCCGATGCTTGGGCTGCGTCACTGGATCGCGACGGTGCCGGAGGACGA
GGATGGCGAGGCCGGGTGCCGCGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGTCGT
GGCCGTGGCC
>chr4B_1855
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---------TCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTCCAGGGTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTTT-GGTACCTCCTCCCATCTTTGTT-GGCTTTTTTTCGTAGA-TTTTTTTTCGTCCCCTCCCCCCACTTCATCGGTTT
ATTTTCACATCACCCTCTCACACAACG--AAAGAAATCTGAACAGATCAGAACTTTCCATACTAGCACAAGTTATTTAGT
AATGTAGAATCAATCATGAACAATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAAACAAATAATTGATTTTCAAAAAAATCGCTCAATCACATTAACCTTACCTTAACTCACGGATGGTAATCAATC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAA-TAAACTCCCTTTCTTATGACATGTATATGATCTTCCCTTCCC
TCTCCGTTGCCGA-GCGTTCTTGATTCTCGAGGCCGATGCTTGGGCTGCGTCACTCGGTCACGACGGTGCCGGAGGACGA
GGACGGCGACGCCGGGTGCCGCGGCACCGCATTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GGCCGTGGCC
>chr5D_1857
TCTCTA--------------------------------------------------------------------------
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------------------CTAATGGAGCAGTTGGTAGTCTCGCTTCCAG-TTTTTTTTCGTCCCACCTCCCATGG-TTTT
TTT--GGTACCTCCTCCCACCTTCGCT-GG-TTTTTTTCGTAGA-TTTTTTTTCGTCCCCTCCCCCCACTTCATCGGTTT
ATTTTCGCGTCACCCTCTCACACAACG--AAAGAAATCTGAACAGATCAGAACTTTCCATACTGGTGCAAGTTATTTAGT
AATGTAGAATCAATCATGAACAATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTA
ATTAGAAACCAAATAATTGATTTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTCACGGATGGTAATCAGTC
TCCAAACAAAGGAAACAATACATCGAGGGAGCAGTAAATAAACTCCCTTTCTTATGACATGTATATGATCTTCCCTTCCC
TCTCCGTTGTCGA-GCGTTCTTGATTCTCGAGGCCGATGCTTGGGCTGCGTCACTAGGTCGCGACGGTGTCGGAGGACGA
GGACGGCGAGGCCGGGTGCCACGGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGGCTTCCCTGGCCCT
GGCCGTGGCC
>SNPs
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------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------------------------S---------------------------
---------------------------------------------------------------------S---SS-----
----------------------------------------------------S---------------------------
-----------S--------------------------------------------------------------------
-----------------S-------------S------------------------S-----------------------
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----S---------------------------------------------------------------------------
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-----------S-----------------SS--------------S------------S---------------------
---------------S----------------------------------------------------------------
--------------------S----------------S------------------------------------------
-------------------------------------S------------------------------------------
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------------------S-----------------------------------------------------S--S----
---------------------------------------S-------------------------S-----S--------
--------------------------S---------S-S-----------S-----------------------------
-----------------------------------------------------S----S--------S-----S------
--------S-----------------------------------------------------------S-----------
---------------------S---SS------------------------------------S--S-------------
------S-----SS-----S--------------------S-------S-----------------------S-------
------------------S----S------------------S------S----S-----------------SSSSSSSS
SSSSSSS-------------------------------------------------------------------S-----
-S------------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
-------------------------------------------S------------------------------------
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-----------------------------------------------------------S------------------S-
---------------------S----------------------------------------------------------
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>forward_127
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---------------------------ATCTACTCCCTCCGTTCCGA---------------------------------
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>reverse_5481
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----------------------------------------GCACCCCGTGATCACTATGT--------------------
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