>input_sequence_78694
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-----------------------------------------------ATGTCGTTAGCCATGGAAGTCGAGGCCATCGGC
CAAGAAACCATCGGCGCAATCACGATGATCGAGGACGGCGACGATGACGAGGTGCTGACTAGCGACGACGGGGGCAGCTA
CAGTCACGGAGAGATGATGGTCACCGACGAC---GACGAGGAGCTGTTCGAGCTCGACATCACCTTCCTCCGCGGCGACA
ACGAGCACGGCCAAGACCGACACGATACGCACGGCGCTGGTGATGGCGCCCATGCCCTGATGGCCAACTGCCTGCTGCCA
GTGAGCTCGGTCAGCATGGCGGTGCCGGTCACGGACAGCAACACCGTCTCATCCTACTATGCCTTCTCCACGTACAGCAG
CTCGAGGAAGTCCGGCATCAGCGGCGGTGGCAAGAGGAGGCTTGGGCGAGCAGCTGCTGACGGCCGCAATTCCACTTGGG
CGAGGTTTCGCCTCTCGAGCAGGGGATTCGCAACCATGGGGAATTTTCAGAGATAG------------------------
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>chr5A_1_TraesCS5A01G127900
TGCAAATATGATCCCTAAACCAACTAAATGTAATATGATAAAGGTGATACAGCTCTCGGATATCCCTACACCCTTTATGA
ACAGTAAATTCGAA-----------AAAAATCTGAAACTTTGTGACATCAAATATGTTCAAACGTTTCAGGTGCTTGGAA
ATTTTAACAACGAAATATCATATAGAGAAAGGTGTACACATGAGAAACAGATATTTGTGCTTAAAGTGCTCAAAGTTTTG
AGCACTAGTCGTTTTCTGGTGTAGAGCTCCTTGAATGTTTTTTCTGCACGA---AAACTTGCAAGTACCTATAAAGTTTG
AACATATTTGATGTCGCAAAGTTTCAGATTTTT----TTTATTTTCTGTATTTTTTGAATTTACT-CTAATAAAGAGTGT
AGGGACGAACCTTGGAGTTAAAAAACCACTATATGATTGATTACGTGTGGTGGTTGTCTCCAAAAACTTTCCACTATATA
TGATTGATTTATGTGTTAAGAGACAATGCATTGGATGTGCCTTTATAGT-----TTAGACATGCATTGATCCATGTTCTT
AGTCAACCTAATTAGAGTACTTAATTTCCCGCAAAATAATAATAATTAGAGTGCTTAATTGGACTTTTGTATGAAGGGTG
GGTGTATTGAAAGTTGTTTTCTGTGAAAAAGTTGGACTTTCAGTTTGGACAAGTGGTTAAAAGCTCGCGCAACCAGGCAG
CTTAAGCTTTCATCCGTTTAAAATA-------------------------------------------------------
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-----ATGTGCAAAGTCCCCAGCAAAAGGAAAATATAGAAAGTAGGCTGCCTACTAGATCACCAACCGTACCCCCTAGCA
GCCTAGCTAGTACTCTTCCCAACCATCTGCAACAAGTTTGAACCAACTCAACCATCCTGCCTGACACCGCATGCAGCGCT
CTCGTCATACTAAATCCTA---ACATGTTGGCGCGTGAACGACGCACGTGTGCAGCTATATAGCCCCTGCACCGCACCTG
TCCGATCTCAAGTAGCCACAAGTGATCGGAGGCGCGTAGCTTGCGCAATGTCGTTAGCCATGGAAGTCGAGGCCATCGGC
CAAGAAACCATCGGCGCAATCACGATGATCGAGGACGGCGACGATGACGAGGTGCTGACTAGCGACGACGGGGGCAGCTA
CAGTCACGGAGAGATGATGGTCACCGACGAC---GACGAGGAGCTGTTCGAGCTCGACATCACCTTCCTCCGCGGCGACA
ACGAGCACGGCCAAGACCGACACGATACGCACGGCGCTGGTGATGGCGCCCATGCCCTGATGGCCAACTGCCTGCTGCCA
GTGAGCTCGGTCAGCATGGCGGTGCCGGTCACGGACAGCAACACCGTCTCATCCTACTATGCCTTCTCCACGTACAGCAG
CTCGAGGAAGTCCGGCATCAGCGGCGGTGGCAAGAGGAGGCTTGGGCGAGCAGCTGCTGACGGCCGCAATTCCACTTGGG
CGAGGTTTCGCCTCTCGAGCAGGGGATTCGCAACCATGGGGAATTTTCAGAGATAGCAGCTCCGTGTATGCGCGAAGGAA
AGGTCAGATGTAAATGTGAAATAGCACAGACCATGTGAAGAAATAGAACCTCAGAGTATGCGCGAAGGAAAGGTCAGATG
TAAATGTGAAATAGCACAGACCATGTGAAGAAATAGAACC-------TCGGATGTAAAAGTCAGATGTAACTGTTGTGTT
CAGATTTCAGAAACGTGATTGTAAAACAAAGGGCACCATTAGTGTTGGGACAATCCCCGGACCAGCTCGCCGCTCATCTC
CTCTCTCACTCGCTTAGACAAAGGTGAAAGGAGAAATATACTGGACACAAGTTTTTCCGGCGCACAAACACCTCACCGCA
CGAACGGCCTAATCTTTACTAGGCACAAACTGACCTTGGCACATACCGACGTGGTGGCACAAACCACCGCTGAGAACGCA
CGCGCACACACACGACTACATCACTAACCACTTGTCGACGTCGCGGCCCTCAGCTCTGCTTAAATAGCCTGACCCACGCA
CCCAGGGCCAGCGGTCACACACCGCACTAACTCACGCACGACGCATACCGGCCGCTAACCAGCTAACTACATGTACGCCC
ACGCACACGCACGCACGTCTCTATGCAAGCAACGCACCGGCCAAGCAACACAGCTACTTGTTTCGGTTTGCGCTCAACTA
GACTTAACCACACACAGCGTC-----------------------------------------------------------
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--------------------------------------------------GGCTAACTAACTAATCTAATCTAGCTAATA
ACCTTACTTGTCAAGATTACTACTAACAATTGGAACCAGGACCAGACAC---GGAAACTAGAAACTTGT-GGGCAGCTCA
TGAAGGGAGGGCTTTTCTTGAAGAGGTGAAGATGAACCCTTAACTAGATGATGAAGTTCATGTGATCACATTCCTTCTGC
AATGCTAGGGTTGGTGAATTTAGTTGTTTTGTAATAACCCTGAGATGTTTTCAATTATTACTTTCCGGAATTTAGAGCAT
CTA--GCCGGATCTCTTAAACATGTCTCATACGTCCGGACAGGCTGCCTGGTCACTCA
>chr5D_34
---------------------------------TATGATAAAGGTGATACAGCTCTCCGATATCCCTACACCCTCTATGA
ACAGTAAATTCGAACAAATGGAAAAAAAAATCTGAAACTTTGCGACATCAAATATACTCAAACGTTTCAGGTGTTTGCAA
ATTTTAATAACGAAATATCGTATAGAGAAAGGTGTACACATGAGAAACAGATATT-------------------------
----------------------AGAGCTCCTGGAATGTTTTTTCAGCATATCTGAAACTTGCAAGCACCCACAAAGTTTG
AGCATATTTGATGCCGCAAAGTTTCAGATTCTTCTAATTTCTTTTCTATATTTTTTGAATTTACTGCTAATAAAGGGTGT
AGGGACAAACCTTGGAGTTGAAAAACCACTATATGATTGATTACGTGTGGTGGTTGTCTCCAAAAACTTTCCACTATATA
TGATTGATTTATGTGTTAAGAGACAATGCATTGGATGTGCCCTTATATAGTTTATTAGACATGCATTGATCCATGTTCTT
AGTCAACCTAATTAGAGTA----------------------------------CTTAATTGGACTTTTGTATGAGGGTTG
GGAGTAATGAAAGTTATTTTCTGTGAAAAAGTTGGACTTTCAGTTTGGACAAGTGGTCAAAAGTTCGCGCAACCAGGCAG
CTTAAGCTTTCATCCGTTTAAAATAACTAGCACAAATGCCCGTGCGTTGCAACGGGAGACAAAAAACCCACTTTACTAAT
GCAATGGCCCACATCATGAGACATGATGATATCTACAAACTCCTTGAAATCCTCCACATTGTCACATGAGAAACAACATC
ATATGAGGAGCATTTTACAAAGATCACACATCTTTACTATGATATAACAGAGAAAAGTGTGGAGTTTGAGTCGCACACAG
TAGGACTCTGAGTCCGATTCCTAGTACATTGGTGACGGGTGCTAGTGAGTTGATCAGAAAAATAAGAGTGAAGATGTTTT
CTGTTCTCAGAAAAGTATAGCACATGACCAACAAAAAATGAACACCTTTTTATTGTGATTTAGACTTTTTTTTGCATGTG
TTATACGTAATATTTTTCTCTTGAGTTAAAAATTTCGGTATGTCAAATATTAGTATTACAACGTCATATCTTAGTTCTTG
ACGTCAACAGTTCTGATATAAAGAAGTGGTTCAACTGTGGCATATGCACCTAAACAAAACACCTACCAATTCAGTTACAA
ACGAAGCGGTTCAATAAATTTAGACACAAAAGAAGAAATTCATCGGCCTCGACCATGTAGGTAAATTATGATATTTTTGC
ACCAGACCGTCTGATCTGGTAGACCGGTCGCACATGTGATGATGATCCAATTGCATGGTCCTATCATGTCCGCCGTGGGT
GATGTTGTGTAAGCCGTGCGTTCGCACATCACATTAATTTTTTGAATAACTCCCCCCGCAAATTTTTTTTTAATAACTCA
AAATCATGATTGGCCACGATCTAAGTTTTTCTCCGGTGCAAAGACATCTAATTTTGTATATGCTCATTTTTTTTTTGTAT
GTGCTCAAGTCTCAACTTGCATGTTCCATAAAAAAATTGCACGCATGTTTTTATATATATTTCTGACTCATAATGGAGTG
TGGCGTACATGATTTTTGTTCCAAATATGGTTTCTCCTTATTCTCTCAATGCCTCTTTCCTTCCTTATTCTCATTCCTTG
TTTGGTTTTTAATCACATCTGAAATCTCTCGTTCTTTCCTTATTATCTCAATCCCTCTTTCTTTCCATATATTCTCTCAA
GGCCTCTTTCCTTTCTTATTATGAGACGTCTGATTTTCTCCGTAATGATTCCTGGGATGGCTCCTCGATATCCAAAAGAA
AATCAAGACGTATATAAATTAGGAAAATTAGATCTAAGGGAGCGAGGTGGGACTATTTAATAGGTTAATCAACATTGTAT
TCTCATATGTTGCCATCCAGCTTAGTCCAGATTTTTTTTTTGCATCGGCCGCCTGGGATTATTTGACAGGCGTGAAACCT
TTGGTTCAAACATGAAAACATCCTAGCTCAACTGGCGACGGCTTGGCATGTTAGGTCTGGAGGTTTTGAGTTCGATCGCA
CCGAAGAACAGTTTTTTTCTGCCTTCTTTTATACAGAAGTTGGGCCGGCTGACTTGGGCCAGATAAACGTTTTGACGGTG
GATGAAATCATGGTAATGACGGACGAAACTACAGACGGTTCCCCGAATTAGTACCACCTCACGTATATGTTTTAAATTCA
AACTGAAAAGCGTAAATTCACGGGAAGAAACGTATTGTGACGGTGAACTCGACAAAGTCAATCCATACTTTATTATTAGA
GAAAGATGTGCAAAGTACCCAGCAAAAGGAAAATATGCAAAGTAGGCTGCCTACTAGATCACCAACCGTACCCCCTAG--
------CTCGTATTCTTCCCAACCATCCACAACAAGTTTGAACTAACTCAACCATCCTCCCTGACACCGCATGCAGCGCT
CTCGTCATACTAAATCCTA---ACATGTTGGCGCGTGAACGACGCACGTGTGCAGCTATATAGCCCCTGCACCGCACCTG
TTCGATCTCAAGTAGCCACAAGTGATCGGAGGTGCGTAGCTTGCGCAATGTCGTTAGCCATGGAAGTCGAGGCCATCGGC
CAAGAAACCTTCGGTGCAATCACGATGATCGAGGACGGCGACGATGACGAGGTGCTCACCAGCGACGACGGGGGCAGCGA
CAGTCACGGAGAGATGATCGTCACCGACGAC---GACGAG---CTGTTCGAGCTCGACATCACCTTCCTCCGCGGCGACA
ACGAGGACGGCCAAGGCCGACACGATACGCACAGCGCTGGTGATGGCGCCCATGCCCTGATGGCCAACTGCCTGCTGCCA
GTGAGCTCGGTCAGCATGGCGGTGCCGGTCACGGGCAGCAACATTGTCTCATCCTACTATGCCTTCTCCACGTACAGCAG
CTCGAGGAAGTCCGGCATCAGCGGCGGTGGCAGGAGGAGACTTGGGCGCGCAGCTGCTGACGGCCGCAACTCCACTTGGG
CGAGGTTTCGCCTCTCGAGCAGGGGATTCGCAACCATGGGGAATTTTCAGAGATAGCAGCTCCGTGTATGCGCGAAGGAA
AGGTCAGATAC--------------------------------------------------------------TCAGATG
TAAATGTGAAATAGCACGGACCAAGTGAAGAAATAGAAACAGATTTTTCAGATGTAAAGGTCAGATTTAACTCTTGTGTT
CAGATTTCAGAAACGTGATTGTAAAACCGAGGGCACCATTGG--------------------------------------
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---------------------------------AACCAGGACAAGACTCACAGGAAACTGGGAACTTGTGGGTCAGCTCA
TGGAGGGAGGGCTTTTCTTGAAGAGGTGAAGATGAACCCTTAACTGGAGGATGAAGTTCATGTGATCACATTCCTTCTGT
AATGCTAGGGTTGGTGAATTTAGTTGCTTTGTAATAACTCTGAGATGTTTTCAACGATGACTTTCCTGAATTTAG-----
----------------------------------------------------------
>chr5B_434
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----------------------------------------------------GTTGTCTCCAAAAAGTTTCCACTATATA
TGATTGATTTATATGTGAAGAGACCATGCATTGGATGTGTCCTTATAGT-----TTAGACATGCATTGATCCATGTTCTT
AGTCAACCTAATTAGAATA----------------------------------CTTAATTGGACTTCTGTATGAGGGTTG
GGAGTAATGAAAGTTATTTTCAGTGAAAAAGTTGGACTTTAAGTTTGGACAAGTTGTCAAAAGTTCGCGCAACCAGGCAG
CTTAAGCTTTCATCCGTTTAAAATAA------------------------------------------------------
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------TGTGCAGAGTACCCAGCAAAAGGAAAATATACAAAGTAGGCTGCCTACTAGATCACCAACCGTACCCCCTAG--
------CTAGTACTCTTCCCAACCATCTGCAACAAGTTTGAACCAACTCAACCATCCTGCCTGACACCGCCTGCAGCTCT
CTCGTCATACTAAATCCTAGTAACATGTTGGCGCGTGAACGACGCACGTGTGCAGCTATATAGCCCCTGCGCCGCATCTG
TCCGATCTCAAGTAGCCACAAGTGATCGGAGGTGCGTAGCTTGCGCAATGTCGTTAGCCATGGAATTCGAGGCCATCGGC
CAAGAAACCATCGCCGCAATCACGATGATCGAGGACGGTGACGGTGACGAGGTGCTCACCAGCGACGAT-GGGGCCGCGA
CAGTCACGGAGAGATGATCGTCACCGACGACGATGACGAG---CTGTTCGAGCTCGCCATCACCTTCCTCCGCGGCGACA
ACGAGGACGGACAAGACCGACACGACACGCAGAGCGCTGGTGATGGCGCCCATGCCCTGATGACCAACTGCCTGCTGCCA
GTGAGCTCGGTCAGCATGGCGGTGCCGGTCACGGACAGCAACATCGTCTCATCCTACTATGCCTTCTCGACGTACAGCAG
CTCGAGGAAGTCCGGCATCAGCGGCGGTGGCAGGAGGAGGCTTGGGCGCGCAGCTGCTGACGGTCGCAATTCCACTTGGG
CGAGGTTTCGCCTCTCGAGCAGGGGATTCGCATCCGTGGGGAATTTTCAGAGATAGCAGCTCCGTGTATG----------
--------------------------------------------------------TATGCGCGAAGGAAAGGTCAGATG
TAAATGTGAAATAGCACAGACCATGTGAAGAAATAGAACC-------TCAGATGTAAAGGTCAGATGTAACTGTTGTGTT
CAGATTTCAGAAACGTGATTGTAAAACAGAGGGCACCATTGGTGTTGGGACAATCCCCGGACCAGCTCGCCGCTCATCTC
CTCTCTCATTCGCTTAGACAAAGATGAAAGGAGAAACACATTGGACACAAGTGTTTCCCGCGCACAAGCACCTCACCGCA
CGGACGGCCTAATCTTTACTGGGCACAAACTGAGCTTGGCATATACCGACGTGGTGGCACATACCACGGCTGAGAACACA
C-------------------------------------------------------------------------------
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>chr5B_1927
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-----------------------CTAACCCCTTGTCAATGTCTCGGCCCTCAGCTATGCTTAAATAGCCTGACCCATGCA
CCTAGGGCCAGCGGCCACACACCGCACTAACTCATGCACGACGCACACCGGCCGCTAACCAGCTAACTACATGTATGCCC
ATGCACACACACGCATGTCTCTATGCATGCAACGCACTGGCCAAGCAACACTACTACTTGTTCTGGTTTGCGCTCAACTA
GACTTAACCACACACAACGTGGGTTTTTTTTCGAAAAGGAGGAGGACCCCCGGCCTCTGCATCTGAACGATGCATGCAAC
CACTTTATTAATTATTCACACAAGATCTTACAAAGTCATACAACAGTAAGTCGAAGCCACCATCTAGGCAACAAAAGTGT
CGCTACTCCGATCCAAATGATGAAGGGATGCTGATAGTCTGGGCCTAATACCAAACAGACCTCGCAGCCATACCTAAAAT
CTAAGACCTGAGGTCCCAATCAGGACGCCTGCCGGGTATGGGCACCCACCAGTCTGGCGTGCTCCTCAACCAGGACGCCT
GCCGGGTATGAGGCCGCCGCAGCCACCTGCCACCAATCCATCTTCAGAGCTGTACTGGTGCATGAACCTTGCCCGGTCTA
GCTGCCGTCGACGCCACCATGACGCCAGACAGCGTCAACCTCCTGCGCGAGTCCATCATTGCACATCAGACGCCTAATCT
CCAGAGCGCTGTGCCATCGAGATCCGACACCATCAATGTGTGTGATGAAGCACCGCTCCTCCTCTTGTCATCTCCAGCCA
TCACTTCCTCCAAAACAATGCCCCCATGAGGGAAAGCGCTACTAAGAACGCCATCATCATCCGATCTGGGAGACCCAGAT
CTAGGGTTCCACCCCGGGCATCCCGAGCCTGATGAAGCAAACTGCAACGACGATGCCTTGACAAGGGAACGACATCTAAG
ACGCCACCATCGTCTGCCATGACCGTAGTCGGCGCAATTTTCATCGGCAGTTGCTCCACCAGACGTGCGCCGCCAGCGTT
GTTGATCCCTTCAACCAGAGTAAGCTCCAAAACTATGCCTTGAAGAGGGGTTACGATGCAAAAACACCGCCATCGCTCGA
TCCCAAGAAGATCTAGGGTTTCCCCCGGAGTTGCCCGTGCTGTCAAGGACCAAACAAGGGAAGAATCTCTGTGGATTTGC
CCAGCTACCGATGAGCCGCACCCACCACCGCGCCAACGGCAATCCAGTGACCAAGGCCTACGCCAGGACCCAGATCCGGC
CGTGCCGCCGCGAACCCATCTAGTCATGCCGCCGTCGTCCCTGGCGACCGCGACACACCAGACCATGAAGCCGCCTGCCG
CGGGGGAAGAGAACTGCCGAAGCGCCACCACCACCCGCCATGGCATCCGGCCCGGCGCCACGCCCTGGCCCAAGGGCGCC
GGCCCGCACCAGCCCCACACGACCGGGAGGACCACGAGTCCCCGCCGCCGCCGGCAACGGCAAGGCTTTGCCTGGCCGTG
CCCTTGGGCGACGGCGGGGGAGGAGGAAGATGTAGGAGACACACAACATGGGCTAACTAACTAATCTATTCCAGCTAATA
ACCTTACTTGTCAAGATTACTACTAACAATTGGAACCAGGACCAGACTCACAGGAAACTAGGAACTTGTAGGGCAGCTCA
TGAAAGGAGGGCTTTTCTTGAAGAGGTCAAGATGAACCCTTAACTCGATGATGAAGTTCATGTGATCACATTCCTTCTAT
AACGCTAGGGTTGGTGAATTTAGTTGCTTTGTAATAACTCTGAGATGTTTTCAACGATCACTTTCT-GAATTTAGAGCAT
ATACAGCCGGACCTCTCAAACATGTCTCATACTTCCGGGCGGGCTGCCCGGTC-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S----------------S-----
------------------------------------------S------------SS----------------S---S--
-------S-----------S-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------S------------S---SSS--------------S---S-S--------
-S-----------S----------------S---------S------S---------------------------S----
------S------------S------------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S--S--
--S---S--------S-----------------------------------------S-----S----------------
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----------------S--------------------S----------------------------------------SS
SSSSSS--------------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
--------------------------------------------------------S--S------------------S-
------------------S---------------------SSS-------------------------------------
-----S--------------------------S-----------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------S---------------S-------------------------------
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---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
-------------------------------------------------S--------S---------------------
----------------------------S-----------S---------------------------------------
--------S--------------S------------S-S-S-----------S-----S--------S------------
--S-----------------S------------S-------S-------------------S-----S---------S--
-SSSSSSSSSSSSSSSSSSSSSS------S------S-S---S------------S--------------------S---
--S-----------S-------------------S----------S-----------------------------S----
-S------S------S-----------S---------S-------------SS---------SS----------------
----------------S---S-----------------------------------------------------------
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--------------------------------------------------------------------S--S--------
-----------------------------------------------S-------------S------------------
---------------------------------------------S---------------------------------S
--------------------------S-----------S---------------SS--S-------S-------------
S----------S----S---------------S-----S-S-------S----SSSSS
>forward_2485
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------------------------------------------------------------------CGTACCCCCTAGCA
GCCTA---------------------------------------------------------------------------
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>reverse_3776
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---------------CGTCTCTATGCAAGCAACGC---------------------------------------------
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