>input_sequence_78689
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-----------ATGCTGCCGGCGCCGTCGCGGGCGGCGGCCGCGGGCGACGACGTCGAGGCGCGCACGCGGGAGCTGCAG
GCGCTGGAGCGGCAGAAGGCGGTCATCGACGCCAAGGCAGCGGCGCAGGTGCGGCGGGAGCTGTGGTGCGGGCTGGGCCT
GCTGGCGGCGCAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTCGTGGGACGTGATGGAGCCCGTGTGCTTCT
ACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGCGGACGGCCACGGAGCCGTCCTTCGAGGGCTTCTAC
CGGAGCCGCTTCGCCACGAGGCAGCGCCGCCTCATGCGGGCCCGCCAGTTCGACGTCGCCCGGTACAACGCTCTGAAGCA
AGGCGAGCGGCGCGGC------GGCTCCGGCTCTGCCGGGCAGAGCGATCACGGCGAGTGCGACGCCGACGTGCTTAGGC
ACGCCACGCACGCACATCAGTAG---------------------------------------------------------
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--
>chr4D_1_TraesCS4D01G238100
TGCTCCATCTGACTTGCGTGCCGAGCTGACCGGGTTTCCAAGAAAAGAAAAACAGACTAAACGAACTTGCAGTTCGCGGT
TTCGCCTAACGCGTTGGTCACATTTTTGTACGACCTCTCGCCGCACAGAG--------TCACAACGTACGTGTCGTCGCC
ATCGGAATTAGTCAGC---ACTACCGCATGTCTCCAGCTCCGACGAGCTGGCCT--------------------------
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--CTGAACCGCACGCCTAGCTAGCCGATGAATCCAGGTCAGCGCCACATTCAATCCTCGTTTTTAATTGCCTGGATTTCG
GCTGGTAAAACGCGGCTCTATCCGCCGCGTCACACTA--GCCTGGTATAAATACCCCGCCCCGTCCCCCCATTCCGACT-
---CACCCACCCACCAAACATCCGAGCTCGAGCTCTCGTCTCTGTCACGTACCACAAACAAAGCCAGCGAAACTCGTGCC
AGAAAGAAAAATGGCGTTCCGCAGAACCATTGCACGGAGCATATGGGCAGCCAAGAACGCGGCCACCTGCGCCGCCGCCG
TGC------CCAAGCCCCCGCCTCCCATCCTCCCGGCGCGCCGGACGCTGCCGGTGGTGGAGGACTGCCCCACGCTCGCA
TTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTCCCGCTCCCGCACCACTGCTTCCCCGCCTTCCC
CGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCCTGCCGCCGTGCCGTGGAGGCCCGGGGAGA
CGGGCGTGACGCTGCAGGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGGAGGCGGCGCGCGCCACGCTGAGGGCCAAC
CCCCAGAGCGTCGTGTCCAGGTCAGAGTACGCGGCGCTCTGCGTCGACATTGCGGGCGGCGCGGAGGGCGGGCGCAGGCT
CGCCTCGGCGCTCGACGAGGCCGGTGTCGTCATCGTCCTCGCCGACGCCGTCTTCCTACGCCCCGACCAGGTCGCGAAGG
CGATCGGGAGCATGCTGCCGGCGCCGTCGCGGGCGGCGGCCGCGGGCGACGACGTCGAGGCGCGCACGCGGGAGCTGCAG
GCGCTGGAGCGGCAGAAGGCGGTCATCGACGCCAAGGCAGCGGCGCAGGTGCGGCGGGAGCTGTGGTGCGGGCTGGGCCT
GCTGGCGGCGCAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTCGTGGGACGTGATGGAGCCCGTGTGCTTCT
ACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGCGGACGGCCACGGAGCCGTCCTTCGAGGGCTTCTAC
CGGAGCCGCTTCGCCACGAGGCAGCGCCGCCTCATGCGGGCCCGCCAGTTCGACGTCGCCCGGTACAACGCTCTGAAGCA
AGGCGAGCGGCGCGGC------GGCTCCGGCTCTGCCGGGCAGAGCGATCACGGCGAGTGCGACGCCGACGTGCTTAGGC
ACGCCACGCACGCACATCAGTAGCGTCTAGGAAC-------CTCTGGTACAGGCTAACTAGTTTGAGACGTAGTCGCAAA
AAGAAAAA-----------TTGAGACGTGTAGATTATAGGGTCCAGTGCTTATCAGGATTCACCGATTCAGGGTCCATGG
CACAAAAAATTCAACGATGTTTGAGTTTGTTTATATATAACTAGTAGCAATTGTAAAATTCACCATTTTATCGTGAAAAT
-TGGATCGAACATTTGTATGTTCAAAAAGGTGAACGTGCACATTTCTCTACTTCCTATAAAAAGTGAGTTGATGATGATG
GTGTGCTTGCCTTTGCGTCATCTACACCGTTGGATCTGAACGTATGACTGAGACTGAAACTTGTCGTCCTCAAACACCCT
GTGGCGTGCCGAGAGTCTGAATGTTCTCTCCCGAAAGAAACCGAGTCTTCCAGAACCCCTCTCAAATTCCTCCCCGTCAG
CCCTCCTCTCTTCACCTCTTGGTCCCTGCGCTCCCTGAACCCGGACACATATCAGCTCGCCAGGCGTCATGCGCGACGAG
GATAGATAAGAGAGATGTGCGCGGTGGATCCACGGGTGTGGCGTGGTCACCAGGTCTTTTCACAAGGAGGTGCTCAAATG
AAGAACTCTTGCATAGGGGTTGTTTGATTTGTGACTAACTTTGCCAAAGACCTGACACATCTAAGGTTAGGCAAGTTTGA
TCAACTTAAATGAGTGTTTGGTTTCAGCCACACCTTAGACACGACACACTTAAGCCCCACATGGTAAAAAGTGTGGCAAG
ATTTCATTAGTCTTGTCAACTTGTGGCTCTCGTTTTGATAAACTAACCGTAGGCAAGCTTATTAAAAATATGTGATAAAA
TATGATAATGTTAGGCCTAGAACCAAACAGCCCTGGGTGACGTCGGAGCGCGGCTGCCGGGTACGGGGGACAAGGTGGGA
GCGTGATGGGTAATTGGAGGCGGAGCAGGGCGTATGGTGACGGTGCCTCCTCTCAGCATCCCAAGCGGCGATGTCGGATG
TC
>chr4B_1
TGCTCCATCTGACTTGCGTGCCGAGCTGACCGGGTTTCCAAGAAAAGAAAAACAAACTAAACGAACTTGCAGTTCGCGGT
TTCGCCTAACGCGTTGGTCACATTTTTGTACGACCTCTCGCCGCACAGAG--------TCACGACATACGTGTCGTCGCC
ATCTGAATTAGTCAGC---ACTACCACATGTCTCCAGCTCCGACGAGCTGGCCT--------------------------
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--CTAAATCGCGCGTCTAGCTAGCCGATGAATCCATGTCAGCGCCACATTCATTCCTCGTTTTTAATTGCCTGGATTTCG
GCTAGTAAAACGCGGCTCTATCCGCCGCGTCACACTA--GCCCGGTATAAATACCCCGCCCCGTTCCCCCATTCCGGCT-
---CACC----CACCAAACATCCCAGCTCGAGCTCTCGTCTCTGTCACGTACCACAAAGCCGGGA----AAACTCGTGCC
ACCAAGAAAAATGGCGTTCCGCAGAACCATCGCACGGAGCATATGGGCAGCCAAGAACGCGGCCACCTGCGCCGCCGCCG
TGCCCAAGCCCAAGCCCCCGCCTCCCATTCTCCCGGCGCGCCGGACGCTGCCGGTGGTGGAGGACTGCCCGACGCTCGCA
TTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTCCCGCTCCCGCACCACTGCTTCCCCGCCTTCCC
CGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCCTGCCGCCGTGCCGTGGAGGCCCGGGGAGA
CGGGCGTGACGCTGCACGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGGAGGCGGCGCGCGCCACGCTGAGGGCCAAC
CCCGAGAGCGTCGTGTCCAGGTCAGAGTACGCCGCGCTCTGCATCGACATTGCGGGCGGCGAGGAGGGCGGGCGCAAGCT
CGCCGTGGCGCTCGACGAGTCCGGCGTCGTCATCGTCCTCGCCGACGCCGTCTTCCTCCGCCCCGACCAGGTTGCGAAGG
CGATCGGGAGCATGCTGCCGTCGCCGGCGCGAGCAGCAGCCGCGGGCGACGACGTCGAGGCGCGCAAGCTGGAGCTGCGG
GCGCTGGAGCGGCAGAAGGCGGCCATCGACGCCAAGGCGGCGGCGCAGGTGCGGCGGGAGCTGTGGTGCGGGCTGGGCCT
GCTGGCGGCACAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTCGTGGGACGTGATGGAGCCCGTGTGCTTCT
ACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGAGGACGGCCACGGAGCCGTCCTTCGAGGGCTTCTAC
CGGAGCCGCTTCGCGACGAGGCAGCGCCGCCTCATGCGCGCCCGCCAGTTCGACGTCGCCCGGTACAACGCTCTGAAGCA
AGCGGAGCTGCGCGGCGTGTCCGGTTC------TGTGGCACAAAGCGATCATGGCGAGTGCGATGCCGACGTGTTTAGGC
ACGCCACGCACGTACATCAGTAGCGCCGTTCTTCTAAAGAACTCTGGTACAGACTAACTAGTTTGAGACGTAGTAC----
--------AAAAAACTAGTTTGAGACGTGTAGATTGTAGAGTCCAGTGCTTATCTGGACTCACCGATTCATGATCCATGG
CACAAAAAATTCACCGATGTTTGAGTTTGTTTATAACTTGTA--TAGTGATGGTAAAATTCACCATTTTATCGTGAAAAC
-TGAATCGAACATTTTTATGTTCAAAAAGGTGAACGTGCAC---------------------------------------
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--
>chr4A_1
TGCTCCATCTGACTTGCGTGCCGAGCTGGCCGGGTTTCCAAGAAAAGAAAAACGGACTAAACCAACTTGCAGTTCGCGGT
TTTGCCTAACGCGTTGGTCACATTTTTGTACGCGACGCTGACCGAGCGAGCAACAGACTCACACCGTACGTGTCGTCGCC
ATCTAAATTGGTCAGCACTACTACCACATGTCTCCAGCTCTCGCTAAGGCTAGTCGTAATAATATCATAGCTAGTATCAT
GCATGACAATTAGACAATTTTGATAAGATGTCATAGACTTAAATAAACAAAAAGAGGATTGAGTATCATATACTGTATCA
TAATAAATATTATGCTAATATATGTTATGCATGACAATAAATAAAGTACTACACCTTCTATTCGAAATTACTTGTCGCAA
AAATGAATGTATCTAAACGTATTTTAGTTTTAGATACAACAATTTTTATGACAAGTAATTCTAGATGAATTAAGTACATG
ATACTATGCATTAGGAAGGTAGTATCATACACTAGTATCATATGCATGATACTAGTATATGATACTCTCCATTACAACCA
GACTAATCCGCACGCCTGATTGGCCGATGAATCCAGGTCAGCGCCACATTCAATCCCCGTTTTTAATTGCCTGGATTTCG
GCTGGTAAAACGCGGCTCTATCCGCCGCGTCACACTATAGCCCGGTATAAATACCCCGCCCCGTCCCCCCATTCCGACCC
ACCCACC----AAACAAACATCCCAGCTCGAGCTCTCGTCTCTGTCACGTACCACAAAGCCGGGA----AAGCTCGTGCC
TCCAAGAAAAATGGCGTTCCGCAGAACCATTGCACGGAGCATATGGGCAGCCAAGAGCGCGGCCGCCAGCTCTGCCGCCG
CGGT---GCCCAAGCCCCCGCCTCCCATCCTCCCGGCGAGGCGGACGCTGCCGGTGGTGGAGGACTGCCCCACGCTCGCA
TTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTGCCGCTCCCGCACCACTGCTTCCCCGCGTTCCC
CGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCCTGCCGCCGTGCCGTGGAGGCCCGGGGAGG
CGGGGGTGACGCTGCAGGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGGAGGCCGCGCGCGCCACGCTGAGGGCCAAC
CCCGAGAGCGTCGTGTCCAGGTCAGAGTACGCCGCGCTCTGCGTCGACATTGCGGGCGGCGCGGAGGGCGGGCGCAGGCT
CGCCGGGGCGCTCGACGAGGCCGGCGCCGTCATCGTCCTCGCCGACGCCGTCTTCCTCCGCCCCGACCAGGTGGCAAAGG
CGATCGGGAGCATGCTGCCGGCGCCGGCGCGCGCGGCGGCCGCGGGCGACGACGTCGAGGCGCGCACGCGGGAGCTCGCG
GCGCTGGAGCGGCAGAAGGCGGCCATCGACGCCAAGGCGGCGGCGCAGACGCGGCGGGAGCTGTGGTGCGGGCTGGGCCT
GCTGGCGGCGCAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTCGTGGGACGTGATGGAGCCCGTGTGCTTCT
ACGTCACCTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGCGGACGGCCATGGAACCCTCCTTCGAGGGCTTCTAC
CGGAGCCGCTTCGCGGCGAGGCAGCGCCGCCTCATGCGCGCCCGCCAGTTCGACGTCGCCCGGTACAACGCGCTGAAGCA
AGGGGAGCGGCGCGGCGTGTCCGGCTCCGGTTCTGTGGCACAAAGCGATCACGGCGAGTGCGATGCCGACGTGTTCAGGC
ACGCCACGCACGCACATCAGTAGCGCCGTTCTTCTAGGGAACTCTGGTACAGGCTAACTACTTTGAGACGTAGTCGCAAA
ATGAAAAGAAAAAACTAGCTTGAGACGTGTAGTAG---------AGTGCTTATCAGGATTCACCGATTGAGGGTCCATGG
CACAGAAAATTCACCGATGTTTGAGTTTGTTTATAACTTGTA--TAGTAATGGTAAAATTCACCATTTTATCGTGAAAAA
CTGGGTCGAACATTTGTATGTTGAAAAAGGTGAACGTGCACGTTTC----------------------------------
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--
>SNPs
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---S---------------------S------------------------------------------------------
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----S---------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------SSSS------------S----------------------------------SSSS-SSSSSS-----------
-SS-----------------------------------------------------------------------------
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---S----------------------------S-----------------------------------------------
----SS------------------S--------------------------------S--------------S-------
--------------------------S----S----------------------------------------------S-
----------------------S---------------S-----------------------------------------
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--------------S-----------------------S-----------------------------------------
---S--------------------------S----SS-SS--S--------------------S---------S------
-------------------------S-SSSSSS-----------------------------------------------
-S-----S---------------------------S---S----------------------------------------
-------------S---------------------SS-SSSSSS---S---S---------------------------S
-----------------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_789
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-------------------------------------------------TACCACAAACAAAGCCAGCG-----------
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--
>reverse_2587
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--------------------------GCCACACCTTAGACACGACA----------------------------------
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--
