>input_sequence_78686
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--------------------------------------------------------------------------ATGGCC
GGGGGAAGAGGCGGCGCAAGGCGAGGCGCCGT---CGTCGCCGCCGCGGCGCTCGCCGTCGCGTGCTGCTGCATGGGCGT
CGCCAGCGCGCGCGGCCCCCTACTACGTCGGCGACGGCGGCGGCTGGTCCCTCAGCAGCGCCAGCTGGCCCAACGGGAAG
CAGTTCCGCGCCGGCGACGTCCTCGGTAAGTGAAAACCTAATTAACGCACACATCTTGCGTTCAGATGGGGTATGGCTGA
AGGTTTATGACGGTTCTCTTCTTTTCTGGGCGCGGTCGCGCAGTGTTCAGGTACAACCCGTTGATCCACAACGTGGTGGC
GGTGGGCGAGGAGGGGTACAGCCGGTGCACCACGCCGGCGGGGTCGAGGACCTACGAGTCCGGCAACGACGCCGTGAGGC
TGGCCAGGGGCGACAACCGCTTCATGTGCACCCGCCTCTACCACTGCAACTTCGGGATGAAGATGGTCGTCAACACCGCC
TGA-----------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G044600
GGATAATGGGCCGGCCCAGTTTGCCGCTAGCTCGGTCGTTTATATGTGTTGGATTGACTATTTGACGCAGAGAGCGTCAT
ATAGGAAATTCGGCAAACAACAGGGTTTCAGACAACAGAGCAGATGACATTTTGCTCAGTTGGCGTAAACGGCAATACAA
AACAACCAAGCAGGTCGGTGAAGAAATGCTGAAGCTGCTAGTGGGCATTCGGTTGTTCAAGGGCAAGGAAAACATACCGC
GTCTCCGATACGGATGCAACCTCATGACTTCATGAAGCCAAGTCTCACCATGACTTACCCCTCTTTATCAGCCATTCATT
AAAGATCCGACGTATCAAATTGGCCCATATTCCGAACTAAGAATCTTAAAAGTGTTTAGATTTTTTTTTTGAATAAGTCA
TAAATGTTTCATTTGTATCATGGGAAAGTTTCAACCCACTTGGATGTATGGTTTGTGATTAAATAGCCTTTTGAGCTCAA
ATAAATAAAAATGTGTATTCACAAATGAAATATTTATGTTTTTCCAATTTCTTTTGAACATTTTAAAAAATAATTTGGAA
CATTTTAATGGATGTTGAACATTTTAAAAAATAGTTTTGAATAAGTCATAAATGTTTCATTTGTATCACAGTGAGACTTG
GCTTCTTGGCATCCCTCCGATCGATGCCAGTAGGCCGGCATCGATGCCATGAATGTTACA--------------------
-------CTGGTGCGATCACGGGCTCGCGTCCTATGCCGCATTGAAGCCATCCACTACACTGCG--GCCTCCTGCGACGC
CACGCTACGGGCATTGATTGTACTGCGCTCCCGCGCCCCGAGGCGGCCTGCC-----ACCGGCCAGCTGCACCACGCTCC
GGTTCCCTTCCCTTCACCTTCAGCTGCTGCTGCCTGCTGGGTCTACTTCACAGCATTGCCACCTTCATTTGTGAGCGCCC
TCCTTCGCTTGCATCACCAGTCACCACTCACCACTCCCTCGGAGGTGAAAGCGCTCCGGCGGGTGGCTAGCGAAATGGCC
GGGGGAAGAGGCGGCGCAAGGCGAGGCGCCGT---CGTCGCCGCCGCGGCGCTCGCCGTCGCGTGCTGCTGCATGGGCGT
CGCCAGCGCGCGCGGCCCCCTACTACGTCGGCGACGGCGGCGGCTGGTCCCTCAGCAGCGCCAGCTGGCCCAACGGGAAG
CAGTTCCGCGCCGGCGACGTCCTCGGTAAGTGAAAACCTAATTAACGCACACATCTTGCGTTCAGATGGGGTATGGCTGA
AGGTTTATGACGGTTCTCTTCTTTTCTGGGCGCGGTCGCGCAGTGTTCAGGTACAACCCGTTGATCCACAACGTGGTGGC
GGTGGGCGAGGAGGGGTACAGCCGGTGCACCACGCCGGCGGGGTCGAGGACCTACGAGTCCGGCAACGACGCCGTGAGGC
TGGCCAGGGGCGACAACCGCTTCATGTGCACCCGCCTCTACCACTGCAACTTCGGGATGAAGATGGTCGTCAACACCGCC
TGACAGTCTGCACTGCAT------------------------------TCCTCTGTTACATTTGGTTGCCGTGAGGGATT
GTTTTGC-------------------TGTGTTTCTGTGG------------GTGTTAGACGACTATCTGCGTGTGGTGTA
TTGACTCTGACGGAATGTGAGTGTTCGTTATTATTATTTGTGATGAATGGGAAGTTCA------TTGCCTATCCTACGAC
GACGACGACGATGTTTCCTTCCTTTTATTCATTTTCAGTGACTCGTTTAGTCATTGTGTTCATTCCAAAGCACGCACTGG
TTGTGGTTGGTGATCCACCGGTTGGTCATTCAGACCTGAAAATGTGATGCACTTCTGAGTTCTGACCGGCTGGTTGCAGT
TCTACACTGCTTT-------------------------------------------------------------------
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------------------TTTGCTGTGTGACGGCGGGCGTTGCGTTCCGCGGACACGGCCATGCAGGCGTCCACCACGCT
CGAGTCCTCGGACTCCGGCGGGACGACTAGCGCCTCCGTCGGGTTATCTTGCAACGGCTCCGT--CGAGGGTGGAACGGA
CTGAAACGGTGGGGGAAAGCGTGATCGATGTGGAGGTAGTGGGAAAGGGCATGCATTGGCATGGAAAACAATGGTGGGAA
TATCCAAGTGTGTGGGCTCCGGGTGGGCCAGGCGTGTCGGATTCTGATGTGACGCGGGTCCGAATGCTCACAAACCTCCA
CTATGTTTGGTTCCACTTCTGGATATTTTTTATAACCGTCGTTAGATGGCAAAACTTTTCAGACCGTCCAATCCGAACAT
CTAGAACGATTTGATGATCCACATTGAAGTTGTCATTGCGTTTTTATATCAGTAGTAGGTGATAAGGGAATTGTGTGTGT
GTGTGAGAGAGAGAAAGATTCGGTGGTGTTAAACGACGAC----------------------------------------
---------------------------------------------------TATATGCATGCCTGGCAAAATGTGTTTGT
TTTTACTATTTTC--------TATTTTGCTAAT---ATGTTCTTAGTATTTCTGGTGATGGTAAGTTCATGCCTCTGCCA
ACGCC-GACGATGATCCCTTCCTTTCAAGCATTTCCAGTGACTCATCTTAATCCTCGTGT
>chr4D_662
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---------------------CGATGCCAGTAGGCCGGCATCGATGCCATGAATGTAGAACTTGTCCG----TGTAGCTG
ACCGGTCCTGGTGCGATCACGGGCTCGCGTCCTATGCCGCATTGAAGCCA-----TACACTGCG--GCCTCCTGCGACGC
CACGCTGCGGGCATTGATCGCACTGCGCTCCCGCGCCCCGAGGCGGCCTGCC-----ACCGGCCAGCTGCACCACGCTC-
----CCCTTCCCTTCACCTTCAGCTAGCTGCC---GCTGGCTCTACTTCACAGCACTGCCACCTTCATTTGTGAGCGCCC
TGCTTCGCTTGCATCACCAGTCACCACTCACCACTCCCTCGGAGGCGAAAGCGCTCCGGCCGGTGGCTAGCGAGATGGCC
GGGGGAAGAGGCGGTGCAAGCCGTGTCGCCGT---CGCCGCCGCCGCGGCGCTCGCCGTCGCGTGCTGCTGCATGGGCGT
CGCCA----GCGCGGCCACCTACTACGTCGGGGACGGCGGCGGCTGGTCCCTCAGCAGCGGGAGCTGGCCCAACGGGAAG
CAGTTCCGCGCCGGCGACGTCCTCGGTAAGC-AAAACCTAA----CGCACACATCTTGCGTTCTGATCTGC----GCCAA
AGGTTTCTGACGGTTCTCGTCTTTTCCGGGCGCGGTCGCGCAGTGTTCAGGTACAACCCGCTGATCCACAACGTGGTGGC
GGTGGGCGAGGACGGGTACAACGGGTGCACCACGCCGGCGGGGTCGAGGACCTACGAGTCCGGCAACGACGCCGTGAGGC
TGGTCAGGGGCGACAACCGCTTCATGTGCACCCGCCTCTACCACTGCAACTTCGGGATGAAGATGGTCGTCAACGCCGCC
TGACCGCCCGCATTGCCATGTTCAAGCTG--------------GGCTCTCCTCCGTTACATTTGGTTGCCGTGAGGGTTG
GTTT-----GTAGTTCTAGATGTGTTTGTGTGTCTGTGG------------GTGTTAGACGACTATCTGCGTGTGCTGTG
TGGACTCTGACGGGAT----GTGTTTGGTCTTATTATGTGTGATGAATGGGAAGTTCA------TGTCTCTGCCT---AC
GACGACGACGATGTTTCGTCCCTTTTATGCATTTTCAGTGACTCGTTTAGTCCTTGTGTTCATCAGAAAGCATGCA----
--ATGGTTGGTGATCCACCGCTTGGTCATTCAGACCTGAAAATGTGATGCACTC------TCTGACCGGCTGGTTGCAGT
TCTACACTGCT---------------------------------------------------------------------
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>chr4A_668
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---------------------------CAGTAGGCCGGCATCGATGCCATGAATGTTACACTTGTCCGTGCATGTAGCTG
ACCGGTCCTGGTGCGATCACGGGCTCGCGTCCTATGCCGCATTGAAGCCA-----TACACTGCGCGGCCTCCTGCGACGC
CACGCTACGAGCATTGATTGTACTGCGCTCCCGCGCCCCGAGGCGGCCTGCCCTGCCACCGGCCAGCTGCGCCACGCTC-
----CCCTTCCCTTCACCTTCAGCTCGCTGCC---GCTGGCTCTACTTCACAGCATCGCCACCTTCATTTGTGAGCGCCC
TGCTTCGCCTGCATCG-------CCACTCACCAGTTCCTTTGAGGTGAAAGCGCTCCGGCTGGTGGCTAGCGAGATGGCC
GGGGGAAGAGGCGGTGCAAGGCGAGGCGCCGTCGCCGTCGCCGCCGCGGCGCTCGCCGTCGCGTGCTGCTGCGTGGGCGT
CGCCA----GCGCGGCCACCTACTACGTCGGCGACGTCGGCGGCTGGTCCCTCAGCAGCGGGAGCTGGCCCAACGGGAAG
CAGTTCCGTGCCGGCGACGTCCTCGGTAAGTGAAAACCTAA----CGCACACATCTTGCGTTCTGGTCTGC----GCCGA
AGGTTTCTGACGGTTCTCTTCTTTCCTGGGCGCGGTCGCGCAGTGTTCAAGTACAACCCGCTGATGCACAACGTGGTGGC
GGTGGGCGAGGACGGGTACAACGGGTGCACCACGCCGGCGGGGTCGAGGACCTACGAGTCCGGCAACGACGCCGTCACGC
TGGCCAGGGGCGCCAACCGCTTCATGTGCACCCGCTTCTACCACTGCAACTTCGGGATGAAGATGGTCGTCAACGCCGCC
TGACCGCCTGCACCGCCATGTTTATCAAGCTCAAGAAAAGTTAGGCTCTCCTCTGTTGCATTTGGTCGCCATGAGGGTTG
GTTTGGTTTGCAGTTCTAGCTAGCTGTGGGTGATAATGGGACTTTGTGCGAGTGTTTGACGACTATCTTCGTGTGCTGTG
TTGACTCTGACGGATT----GTGTTCGTTCTTATTATTTGTGATGAATGGGAAGTTCAAGTTCATGTCTCTGCCTACGAC
GACGACAATTT--TTTCCTCCCTTTTATGCATTTTCAGTGACTCGTTTAGTCGTCGTGTTCATCAGAAAGCACGCA----
--GTGGTTGGTGATCCACCGCT---------AGACCTGAAAATGTGATGCACAC------TCTGGCCGGCTGGTTGCAGT
TCTACACTGCTGGATGATTTTGCTGATGTAAACGGCTGAACCGGCAATGAGAAAGACCAAATTAAAAGTCAGTTCTAACT
CCGCTACCTGCTGCACATCTGAAGAACAAGGATATCAGACAATATGACTAAACAGCGGATGCAGAGTAGTCTTCCATTTC
TATGATTTATTACGAACAGCTCGGTCGATCGTTCACTCACTTTCCAGTTTTCCACGCCCTGAACTACCTGCCAGCGATTT
CCTTTTCTGCATGTCAAATTTAATCATACGTTTAATAGTGGTAAAAGTATACAATGACAACCAAAAAACACCGCATGTTC
AATAAATATTTACATCCAATCGATCTCAAAGATTGTCACTTTGGATGTTCATGCCAATGACCTTTTTCTTGGCAAAGACC
TCATTCTTGGTTGATTTGACATCCTCCGTTTGCGCGAAGCGCTTCAATATGCTCATAAGTAGGCTTGAACAATCTGCTCC
GCATCGGACTCCAAGTCCGACGTCTTCACGAACAACATTTTGTAGTCCTCCGAAACAGCCTTGATCTCATCGCCTCATTG
TCCCGCTTCGATGAGGCATTGCGGTAAACGATGACCGGGCACCAACGCCAACGGTCCATGGTCGGCATCCGCGACTAGAC
AAGCCCCGGCGACTGCAACACCGTGAAGACATAGTTAGTGTTGAGGTTGATGGTGAACGGGACTCGATGGCCGAAGGTGA
GAGAGGATGAGCATTGTTGCGGTGATTGTTGATGACCGAGGTGCTGGGAGGCCTAGTAGTAGGGCGTCTATAGTTGGGAC
GACTGCACCGTCTATTGCCCGGGTGGCACAAGGGTGGTGGTGTGCTTTGTTGGGCGAGGTTCGCGTTGGTCAGTCGTCGA
CGCGCGCCTGCCTGCTTCTTTGCTGTGTGGCGGTGGGCGTTGCGTTCCGGGGACATGGCCTTGCGGGCGGCCACCACGTT
CGAGTCCTCGGACTCCGGCGGGACGACGAGCGTCTTCATCGGGTTCTCTTGCAATGGCTCCATGGCGAGGGTGGAACAGA
CTGAAACGGTGGGGAAGTGGCGATCAAGGC-GGAGGTTGTGGGAAAGGACATGCTTTGGCGTCGAAA-CAATGGTAGAAA
TATCCAAGTGTGTGGGCTCCGGGTGGGCCGGGCGTGTCGGATTCTGATGTGACGCAGGTCCGAATGCTCGAAAACCCCCT
TGC-GTTTGGTTCCACTTCTAGACATTTTTTATGATCGTCTTTAGATGGCAAAAATATTCAAACCATCAGATCCAAACAT
CTAGAGCGATTTGATGATCTACATTGAAGTTGCCCTTACGTTTTTATATAAGTAGTAGGTGATAAGGGGATTGTGTGT--
--GTAAGAGAGAGATTCAGCTTTCAATGATATAATTTTCATATTGTGCAATGTCATGTACTATTAATCTTGTCAATAGTC
AAAGGCGGTCTTAAAAAATACATTAGGCCCTATATAGATGGAAGGAGGGAGTATCTGCATGTCAGGCAAAATGTGTTTGT
TCTTATTATTTAATTTTATTTTATTTTGCTAATACTATGTTCTTAGTATTTCTGGTGATGGTAAGTTCATGCCTCTCTCC
TACGATGACGATGATCCCTTCCTTTTAAGCATTTTCAGTGACCCATCTTAGTCCTCGTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
--------------------------------------------------SSSSS-------------------------
-------------------------------------------------------------------------------S
SSSS---------------------SSSSSSSSSS-----S---------------------------------------
-S----------------------------------------------------------S------------S------
--------------S-----------------------------------------------------------------
-----SSSS--------S------------------------------------------SS------------------
-----------------------------------------SSSS------------------S---SS-SSSSS--S--
------S-----------------------------------------------------S-------------------
------------S-------S-S---------------------------------------------------------
--------------------------------------------------------------------------S-----
----S-S---------SS-----------------------------------------------------------S-S
----S-S------------------------S-------------------------------------------S---S
----------------SSSS---------S-----------------------------------SS-SSSS--------
-------------------S--------S-----------------------S----------SSS----------SSSS
SS------------------S--------------------------------SSSSSSS--------------------
-----------SS-------------------------------------------------------------------
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-----------------------------S---S---------------S-----S----S---S----S--------S-
---------------------------S----S--S-S-------S--------S------S---------------S--
--------------S-SS-SSSSSSSSSSSS------S----------S-----S-----S-S----S-------S-S--
-----------------------------S-------------------------S-------------SS-----S--S
SSSS----------------S--S---------S-S----S-------------S-S----S---S--SS----S-----
-----S-------------S------------S-S--S-----------S------------------S---------SS
SS--S---------SSS-SSSSSSSS--S--S-SSSSSSS----------------------------------------
------------------------------------------------------S------S-S----------------
-S---S-----SS---------------------------------------------------------------SS-S
SSSSS--------------------S--------S-------S-------S---------
>forward_43
-----------------------CCGCTAGCTCGGTCGTTTAT-------------------------------------
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>reverse_1605
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----TGCTGTGTTTCTGTGGGTGT--------------------------------------------------------
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