>input_sequence_23377
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-----------------------------------------ATGGCCGCCGCGGTCGCCTTGGCAAGCCCTCTCCGGCGA
CTCCTCCACTGCCCTTGCCCGCGCCGCGCTATCGCCACGCCACTCCGCTTCTTCGCGCGAGGTAAGCCCTAACCCATTGC
CCGGTCGGTCTGATGCTCTGATTGAGCTGTCTGTCTAAGGCTTGGCCGCCGTGCGCAGGGCGGTGTGACCTGGCCCTCGC
CGTCTCGGCGGCCGCAGTCGGAGAT---------AAGTGGGGCGTGCACAGGCATGTAATCGAGGAAGTCATGGACATTC
TGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAACCTCCGTCAGAGTCTAGTTCGACGTG
AAACAGTTCTATTGACTGCCCC----------------------------------------------------------
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----------------------------------------------------------------GTTTACTGAGATTAGA
TGGTTGATGATAGTGC-GGATACTTGGCCTGTCGACGAACTGTGCCTCGATGGAATTTTAGACTTCTTCCCACTATTCAT
GAGCTTCAGGCTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAGTATTTTTAGTACATGAAAATTAGGGGAAATGA
GATGTGCTTCCTGTTAGCTGTTTCGCTATTGAAGCATGAAGAAAAAGTCAATTAATTGTCCATTTGGTGTGTGAAAACAT
AACCTTTCAATCATATTGAC--TGGTGCCTTTGTAGGAAGAGAATAAAATTGCTTCTTCCCAGGTATACCAAGTGGCAGG
AGTTCTAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAAGTTGATCCTGATATCCTATAGTG
TCACATGATGCTTAGTAGAACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAGGTTACCACATGG
CTTTTCAGTAAATTTGTTCCAGTACCGTAGTTAGTCCATTTCCAAGAGAAGGCATATCACCCTGTTTTATATTGAGAAAA
TTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTAAGTTCATGAATTTGTACTGACATCAAGCGTATGCAGGCACAAA
GGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATGCTAGCAATTGAA
AAGTTTGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGGAGTTGTTGATAG
CTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCATCTAGGCTGAGC
GGTGCCGAATTTCAGTTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGGTTTTCAAGAATT
TATATATTGTAGCCACCACTATCTGTTATGTAAACTGAATTTTAAACCTTTCCCAGCATCTCCGGGAATTTCCGATTGGA
ACCCTGTTCTCATGGTGATTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAGATATACTTTTAC
AGGTCCACACTTTCCACAAATACTCATTTCCCTGATGCGGTGTCCAGTTTTTCTTTTTCCATCTTATCACCATTTGAGCT
GTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTATCTGACTTCCAC
ACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGCGCAAGCTGGATGTGCATACTCCCACTTGTG
TGCCTATGTTTATATAATGGAGCAGATCTGAG------------------------------------------------
--------ATATTACATGCTGATGTATTTATTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCGATCTTAATTTTT
ATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGCCTTTTATATTTGTGAGTTTTGACCCAAATCTGTCC
GCGAAGAATCTCCCCATGAACTTTGACTGTTGTTTATGATTTTTTTGAGTATTATTTTCCTTGTTGGAAGTGCAGATTCT
TCTAATTATGGTTTACTGTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCCAGATTCCCTTGC
TTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCATGGATCTTAGTGTATATACTGCATTCTTAAGATCA
CAACAACTTATGATGTAATACCCTGGAATAAGCTGCTCAGCACTGCC------CTGCAGGACCAAATCTTTTAAAACTGT
AGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTAGCATGATCAGGT
ATGAACTTTGAGCTGATAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTAACATGAATAGTTGGACATTCTT
ATCTTATTTTGGACAGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCGTGCACAATGCAATTCATTGTAAGTTTCTTTTT
CTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCAAGGCTGGGGATG
TTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAAATGCTTGATGAG
TCTTGAATTCTCTCGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACTCTGATGGAACAATTTTTC
TGGTGGTTGAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGTATGCAGTTAAGT
TGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTGTTTTAATCCTTTCCTTCTTTATTCTGTGAACCATACTCCAA
AATGTTAAATGGAAAAATTACAACCTT-GGCTGTCCACTTATATTCATAATATATTTGTTGATATATGCTGACAATTACT
CCTAGATCTTTGCATTATATGATATGCAGAAATACCCCTTATAGCATGCTATGGAAGATGTATGCATGCTACTAGAGATG
TCTAATATATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGGGAAATCGTGACT
ACGAAGAAAGGCAAATATGTCGTTCAGTTGATTCAATATTTGTAG-----------------------------------
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>chr3A_1_TraesCS3A01G273700
AGCTCCCGGGCGTTCTTGGTGCGGCCCTGCGCGCTCAGCCCGCGCACCAGGTAGCTGTACGTGAGGCCGTCCGGCTGGCA
GCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGCCCCTGACGAGCA
CGTTGAGCGCCCGGGTGTCCGGCGGGACGCCCTCCTCCAGCATCTGCCGGAACAGCGCCGAGACGGTGTCCATGTACATG
TAGTGCACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCCGTGAAGAGCGCGTGGTAGGTGTCGGCGGCGGGGCGCGC
GGCCGGGTCGGCGGAGGCGCGCATGAGGGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGCAGTAGAAGTAGA
GGGCGGCCCTGAGGAGGGGCCCCGGGGACGGCAGGGACGGGAGGAGGGAGAAGAAGAGGGCGCAGGTGCGGTCGAACTCG
TGGTAGAGCTGGGCGGCGCCCAGGCGCTTGACGGCGACGAGGAAGGGCCCCGGGTCGGGCCGGAAGGTGGGCCGGCCGAG
GGAGTGGGTGAGCAGCGGGAAGAGGAGGCGGAGGTCAGAGGTGGAGGCGAGGGAGGATGCGAGGACGGCCGGGGTGAGGC
GGGAGGGGAGGGAGGCGACGGCGGCGGAGACGGCGTCGGGCGACGGCGACTGGCTGGGCGCGCGGTGGCTGCGGCGGAAG
CGGTGCGGGGTGCGGCGGGACGAGGTGGCGAAGGGGAGGCGGTGGGAGAGGGAGGCGCCGGCGGGCGTGCTGCAGAGGAT
GCGCCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGGCGGGGATACTGCAACACCAGTACACTCCACAGAACCCACAAA
AGGCCACAGACGGCACAACACAATCCCGCACCCGGTTAGGCAACCGCCACCAAGCACGGCACGCTCACATCACATCACAG
AG-GCTCAGAGCACAGGCGGCCTGGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGCCCTCTCCGGCGA
CTCCTCCACTGCCCTTGCCCGCGCCGCGCTATCGCCACGCCACTCCGCTTCTTCGCGCGAGGTAAGCCCTAACCCATTGC
CCGGTCGGTCTGATGCTCTGATTGAGCTGTCTGTCTAAGGCTTGGCCGCCGTGCGCAGGGCGGTGTGACCTGGCCCTCGC
CGTCTCGGCGGCCGCAGTCGGAGAT---------AAGTGGGGCGTGCACAGGCATGTAATCGAGGAAGTCATGGACATTC
TGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAACCTCCGTCAGAGTCTAGTTCGACGTG
AAACAGTTCTATTGACTGCCCC----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTTTACTGAGATTAGA
TGGTTGATGATAGTGC-GGATACTTGGCCTGTCGACGAACTGTGCCTCGATGGAATTTTAGACTTCTTCCCACTATTCAT
GAGCTTCAGGCTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAGTATTTTTAGTACATGAAAATTAGGGGAAATGA
GATGTGCTTCCTGTTAGCTGTTTCGCTATTGAAGCATGAAGAAAAAGTCAATTAATTGTCCATTTGGTGTGTGAAAACAT
AACCTTTCAATCATATTGAC--TGGTGCCTTTGTAGGAAGAGAATAAAATTGCTTCTTCCCAGGTATACCAAGTGGCAGG
AGTTCTAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAAGTTGATCCTGATATCCTATAGTG
TCACATGATGCTTAGTAGAACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAGGTTACCACATGG
CTTTTCAGTAAATTTGTTCCAGTACCGTAGTTAGTCCATTTCCAAGAGAAGGCATATCACCCTGTTTTATATTGAGAAAA
TTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTAAGTTCATGAATTTGTACTGACATCAAGCGTATGCAGGCACAAA
GGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATGCTAGCAATTGAA
AAGTTTGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGGAGTTGTTGATAG
CTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCATCTAGGCTGAGC
GGTGCCGAATTTCAGTTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGGTTTTCAAGAATT
TATATATTGTAGCCACCACTATCTGTTATGTAAACTGAATTTTAAACCTTTCCCAGCATCTCCGGGAATTTCCGATTGGA
ACCCTGTTCTCATGGTGATTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAGATATACTTTTAC
AGGTCCACACTTTCCACAAATACTCATTTCCCTGATGCGGTGTCCAGTTTTTCTTTTTCCATCTTATCACCATTTGAGCT
GTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTATCTGACTTCCAC
ACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGCGCAAGCTGGATGTGCATACTCCCACTTGTG
TGCCTATGTTTATATAATGGAGCAGATCTGAG------------------------------------------------
--------ATATTACATGCTGATGTATTTATTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCGATCTTAATTTTT
ATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGCCTTTTATATTTGTGAGTTTTGACCCAAATCTGTCC
GCGAAGAATCTCCCCATGAACTTTGACTGTTGTTTATGATTTTTTTGAGTATTATTTTCCTTGTTGGAAGTGCAGATTCT
TCTAATTATGGTTTACTGTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCCAGATTCCCTTGC
TTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCATGGATCTTAGTGTATATACTGCATTCTTAAGATCA
CAACAACTTATGATGTAATACCCTGGAATAAGCTGCTCAGCACTGCC------CTGCAGGACCAAATCTTTTAAAACTGT
AGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTAGCATGATCAGGT
ATGAACTTTGAGCTGATAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTAACATGAATAGTTGGACATTCTT
ATCTTATTTTGGACAGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCGTGCACAATGCAATTCATTGTAAGTTTCTTTTT
CTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCAAGGCTGGGGATG
TTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAAATGCTTGATGAG
TCTTGAATTCTCTCGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACTCTGATGGAACAATTTTTC
TGGTGGTTGAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGTATGCAGTTAAGT
TGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTGTTTTAATCCTTTCCTTCTTTATTCTGTGAACCATACTCCAA
AATGTTAAATGGAAAAATTACAACCTT-GGCTGTCCACTTATATTCATAATATATTTGTTGATATATGCTGACAATTACT
CCTAGATCTTTGCATTATATGATATGCAGAAATACCCCTTATAGCATGCTATGGAAGATGTATGCATGCTACTAGAGATG
TCTAATATATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGGGAAATCGTGACT
ACGAAGAAAGGCAAATATGTCGTTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCTCTGAAGAATACC
TGACTCGTGGTATGCATTTTGA----TACCTACTATTTGAAGAAAATTCT------------------------------
----------------------------------------------------------CTTGTTCACGATTCAAATAGTA
AAGCTGAAAATTTCGCTCTGCTTAGTACAGTATAATTCTAAGATTCATCAAGTAATTACTTCATTTTGCTTAAATTAGCT
GGGTTCAACATTTCTAAAGAAACTCGTGAGTATATTGTTAGGGTGTAATTGTATTGCTAAGTCATCACTGAGGCAGTATA
AAAGATCATACTATGATGGAAAAAACAATTTATTTATGATATGTGTGCTTA---------CCCTATTTTGGATT-TCACT
CTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCGAAGTGCTCAGTTGCTTACACAAGCACAAGGGCTGCAGCTG
CCTGCGAA-----------------TATTTACGATGAAACTGATCCATAATATTTAGAAGAGAAAAGGACAAGTGGACAG
TACATGTAAAGTATATGTGACAGCTTATCTTTAAAGTCCAGATCAAATTGAGAATGAAATTTAGAAGGTACGCAATTCGC
TTATAGTTGCAAGTCCATATGTTTTCAGT--ATTTATGAAGTAAATGGTAGGAGTATCATATACGCAAAGATGGGTAGCT
GCACATA--GGCTTGGAAAATCTGCTTTCTTTCATCATAGTTCTTCATGTGGCAGCTACCACTGATGTAGTCTTTTTGGT
ATTTTGTAGGATCGAAGTCCCTCTGTGAACTCCAACTCGTGTGAGGACTCAATCTGCTTTAGGGCAAAAAGGCGAACAAA
AAGTATATCTTTTTTTTTGAAACGAAGGCAAAAGATTTGCCTCATCCATTAAATAAGAGGAGAATAGAGTTTAGAGTTTT
TACAAGCGCCCTTGCAACACGGCATGGCAATTACTCTCGTACAACAAAACACCCTAGTTTCTTAGCACCTGCCGTAACCC
ATAATTTTGCCTCAAGCACGATATTTTGGAGCAGGATAGGCGGCGGCG
>chr3B_1
AGCTCCCGGGCGTTCTTCGTGCGGCCCTGCGCGCTCAGCCCGCGCACCAGGTAGCTGTACGTGAGGCCGTCCGGCTCGCA
CCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGCCCTTGACGAGCA
CGTTGAGCGCCCGGGTGTCCGGCGGGATGCCCTCCTCCAGCATCTGCCGGAACAGCGCCGAGACGGTGTCCATGTACATG
TAGTGGACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCGGTGAAGAGCGCGTGGTAGGTGTCGGCGGCGGGGCGCGC
GGCCGGGTCGGCGGAGGAGCGCATGAGCGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGCAGTAGAAGTAGA
GGGCGGCCCTGAGGAGGGGCCCCGGGGACGGCAGGGACGGGAGGAGGGAGAAGAAGAGGGCGCAGGTGCGGTCGAACTCG
TGGTAGAGCTGGGCGGTGCCCAGGCGCTTGATGGCGACGAGGAAGGGCCCGGGGTCGGGCCGGAAGGTGGGCCGGCCGAG
GGAGTGGGTGAGGAGCGGGAAGAGGAGGCGGAGGTCGGAGGTGGAGGCGAGCGAGGATGCGAGGACGGCCGGGGTGAGGC
GGGAGGGGAGGGAGGCGATGGCAGTGGAGACGGCGTCGGGTGACGGCGACTGGCTGGGCGCGCGGTGGCTGCGGCGGAAG
CGGTGCGGGGTGCGGCGGGAGGAGGTGGCGAAGGGGAGGTGCTGGGAGAGGGAGGCGCCGGCGGGCGTGCTGCAGAGGAT
GCGGCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGG---GGATACTGCAACACCAGTACAGTCCGCAGAACCCACAAA
AGGCCACAGACGGCATAACACAATCCCCCACCCGGTTAGGCAACCGCCACCACGCACGACACGCTCACATCACATCACAT
AGCAC-CAAAGCACAGGCGGCCTAGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGCCCTCTCCGGCGA
CTCCTCCACCTCCCTTTCCCGCGCCGCGCTATCCCCACACCACTCCGCTTCTTCGCGCGAGGTAAGCCCTAACCCATTGC
CTGGTCGGCCTGATGCTCTGATTGAGCTGTTTGTCTAAGACTTGGTCGCCATGCGCAGGGCGGTGTGACCTGGCCCTCGT
CGTCTCGGCGGCCGCAGTCGGAGATTCGTCTGCTAAGGGGAGCGTGCACAGGCATGTAATCGAGGAAGTCATGGACATTC
TGGATATGGTTATCTCTTTTTCTTCATTCTAACACATTTGTATTTTCCATTGAGCTTCCGTCAGAGTCTAGTTCGACGTG
AAACAGTTATGTTTGAATGTTTCGCTTACTGAGATTAGATGGTTGACGATAATGCGGATAGTCGGCTTGTGGATGAGGTG
TTTGATTAACTGCGTCAATGGAACTTGAGGTTTCTTTCCGCAATTTAAGAAAGTATCATGAGCTTCAGGTTGTGTTCCAG
TAGGCTCACAGACTTCCTCTCTAAGTGGGTTTATTACATGAAAATTAGGGGG-AAATTAGATGTGTTTACTGAGATTAGA
TGGTTGATGATAGTGCCGGATGCTTGGCCTATCGGGGAACTGTGCCTCGATGGAATCTGAGACTTCTTCCCACTATTCAT
GAGCTTCAGGTTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAGTATTTTTAGTACATGAAACTTAGGGGAAATGA
GAAGTGCTTCCTGTTAGCTGTTTCGCTATTGAAGCATGAAGAAAAAGCCAATGAATTGTCCATTTGGTGTGTGAAAACAT
AACCTTTCAATCATATTGAC--TGGTGCCTTAGTAAGAAGAGAGTAAAATTGCTTCTTCCAAGGTATACCAAGTGGCTGG
AGTTATTATATAATTAGTGAATAGATGTACGGATAAGTTGTAGGGAGGAAATACAAACTTGATCCTAATATCCTATAGTG
TCACATGATGCTTGA---AACAGAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAGATTACTGCATGA
CTTTTCAGTAAATTTGATTCAGTTCTGTAGTTAATCCATTTCCAAGAGAAGGCATATCACCCTGTTTCATATTGAGCAAA
TTACTGGGGTTACCAGTTACATGATCATTAGTCCTTCGATTCATGAATTTGTACTGACATCAAGCGTATGCAGGCACAAA
GGGCTTCCCAACGAAGAGACGTCTTCCACACCAGTTTTCTTACGCCGCCTATCATAGCGGAGGCTATGCTAGCAATTGAA
AAGTTAGCTGGTATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTTGAATTCAATAAAATCAAGGGACT---------
--------------TGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCATCTAGGCTGAGC
GGTGCCGAATTTCGGTTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGGTTTTCAAGAATT
TATAT--TGTAGCCACCACTACCTGTTATGTAAACTGACTTTTAAACCTTTCCCAGCATCTCCGGGAATTTCCGATTGGA
ACCCTGTTCTCATGGTGACTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAGATATACTTTTAC
AGGTCCACACTTTCCACAAATACTCATTTCCCTGATGCGGTGTCCAGTTTTCCTTTTTCCATCTAATCATCATTTGGGTT
GTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTATCTGACTTCCAC
ACTAGAAAAGGTAGGTGTCTCGCAAATTATGTTGCCAATTTTTCGTTTGCGCGAGCTGGATGTGCATGCTCCCACTTATG
TGCCTATGTTTATATAGTGGACCAGATCTGAGATATGGTTCATTCTTCATTGACATGCATTCAATGCTATGCAAAGCACA
TAGCCTGTATATTACATGCTGATGTATTTATTTTTACTCGGCACTTTAAGAAATTAGAGCACATTGCGATCTTAATTTTT
ATGTCCGCTTAGATTGCTGAAAATCTTTGTTCTTTTTATGTTAGTCTTTTGTATTTGTGAGTTTTGACCCAAATCTGTCC
ACGAAGAATCTCCCCATGAACTTCGACTGTTGTTCATGATTTTTTTGAGTATTATTTTCCTTGTTGGAAGTGCTGATTCT
TCTAATTATGGTTTACTCTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGCGTTTCATGCACCCAGATTCCCTTGC
TTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCGTGGATCTTAGTATATATACTGCATGCTTAAGATCA
CAACAACTTATGATGTAATACCCTGGAATAAGCTACTCAGCACTGCCATTGAACTGCAGGACCAAATCTTTTAAAACTGT
AGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTCAAAATATCACGCACAAAGCTTGGTAGCATGATCAGGT
ATGAACTTTAAGCTGCTAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTAACATGAATAGTTGGACATTCTT
ATCTTATTTTGGACAGTGCTGTTAGCCTGTTGGTTTTTCTTATTACCGTGCACAATGCAATTCATTGTAAGTTTCTTTTT
CTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCAAGGCTGGAGATG
TTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAAATGCTTGACGAG
CCTTGAATTCTTTTGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTCACGCTGATGGAACAATTTTTC
TGGTGCTTGAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGACCTTGCATTGTATTGTGTATGCAGTTAAGT
TGGACCCCCCCCATTCTATATGTTTAGTGTTTGTTATTGTTTTGATCTTTTCCTTCCTTATTCTGTGAACCATACTCCAA
GATGTTAAATGGAAAAATTACAACCTT-CGCTGTCCACTTATAGTCATAATATGTTTGTTGATATATGCTGACAAT----
--TAGATCTTTGCATTATATGATATGCAGAAATACCCGTTATAGCATGCTATGGAAGATGTATGCATGCTACTAGAGATG
TCTAATACATTTTCAAATCTTTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGGGAAATCGTGACT
ACGAAGAAAGGCAAATATGTCGTTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCTCTGAAGAATACC
TGACTCGTGGTATGCATTTTGATACCTACCTACTATTTGAAGAAAATTCT------------------------------
----------------------------------------------------------TTTGTTCACGATTCAAATAGTA
AAGCTGAAAATTTCGCTCTGCTTAGTATAGTAT-ATTCTAAGATTCATCAAGTAATTACTTCATTTTGCTTGAATGAGCT
GGGTTCAATAGTTCTAAAGAAACTCGTGAGTACATAGTTAGGGTGTAATTGTATTGCTGATTCATCACTGAGGCAGTATA
AAAGATCATACTATGATGGAAAAAACAATTTATTTATGCTATATGTGCTTAACATCTACTCCGTATTTTGGATTTGCACT
CTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCAAACTGCTCAGTTGCTTACACAAGCATAAGGGCTGCAGCTG
CCTACCTTTGCCTACCTGCAAATACTATTTACGATGAAACTGATCCATAGTGTTTAGAATGGAAAAGGACAAGTGGACAG
TACTTGTAAAGTATATGTGACAACTTATCTTTAAAGTCCAGCTGAAATTGAGAATGAAATTTAAAAGGTACGCAATTTGC
TTATA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>chr3D_1
AGCTCCCGGGCGTTGTTGGTGCGGCCCTGCGCGCTCAGCCCGCGCAGCAGGTAGCTGTACGTGAGGCCGTCCGGCTCGCA
GCCGTAGACGGGCGCCATCTGGTGGAACACGCGCAGCGCGTCGTTGAGGTGCAGCGACTGCGCGTAGCCCCTGACGAGCA
CGTTGAGCGCCCGGGTGTCCGGCGGGATGCCCTCCTCCAGCATCTGCCGGAACAGCGCGGAGACGGTGTCCATGTACATG
TAGTGCACCATGGAGTCGTTGCCCCCGCGCGACAGCAGCGCGGTGAAGAGCGCGTGGTAGGTGTCGGCGGCGGGGCGCGC
GGCCGGGTCGGCGGAGGCGCGCATGAGGGTGTAGACGTGGAACGCCTTGCCGAGCTTGCGGAACTCGCAGTAGAAGTAGA
GGGCGGCCCTGAGGAGGGGCCCCGGGGACGGGAGCGAGGGGAGGAGGGAGAAGAAGAGGGCGCAGGTGCGGTCGAACTCG
TCGTAGAGCTGGGCGGCGCCCAGGCGCTTGACGGCGACGAGGAAGGGCCCCGGGTCGGGCCGGAAGGTGGGCCGGCCGAG
GGAGTGGGTGAGCAGCGGGAAGAGGAGGCGGAGGTCGGAGGTGGAGGCGAGGGAGGATGCGAGGACGGCCGGTGTGAGGC
GGGAGGGGAGGGAGGCGATGGCAGCGGAGACGGCGTCGGGAGACGGCGACTGGCTGGGCGCGCGGTGGCTGCGGCGGAAG
CGGTGCGGGGTGCGGCGGGAGGAGGTGGCGAAGGGGAGGCGGTGGGAGAGGGAGGCGCCGGCGGGCGTGCTGCAGAGGAT
GCGGCGGAGGAGCGTGCTCATCGCGGCGGCGGCGGCGG---GGATACTGCGACACGAGTACAGT---------CCACAAA
ATGCCACAGACGGCAT-ACACAATCCCCCACCCGGTTAGGCAACCGCCACCAAGCACGACACGCTCACATCACATCACAG
AGCGCTCAAAGCACAGGCGGCCAAGTCGGCTTGCAGAAAGGATGGCCGCCGCGGTCGCCTTGGCAAGCCCTCTCCGGCGG
CTCCTCCACTTCCCTTGCCCGCGCCGCGCTATCCCCGCACCACTCCGCTTCTTCGCGCGAGGTAAGCCCTAACCCATTGC
CCGGTCGGCCTGATACTCCGATTGAGCTGTTTGTCTAATACTTGGTCGCCATGCGCAGGGCGGTGTGACGTGGCCCTCGC
CGTCTCGGCGGCCGCAGTCGGAGATTCGTCTGCTAAGGGGGGCGTGCACAGGCATGTAATCGAGGAAGTCATGGACATTC
TGGATATGGTTATCTCTTTTTCTTCATTCTAGCACATTTGTATTTTCCATTGAGCTTCCGTCAGAGTCTAGTTCGACGTG
AAACAGTTATGTTTGAATGTTTCGCTTGCTGAGATTAGATGGCTGACGATAATGCGGATAGTCGGCTTGTGGACGAGGTG
TTTGATTAACTGCCTCAATGGAATTTGAGGTTTCTTTCCACAATTTAAGAAAGTATCATGAGCTTCAGGTTGTGTTCCAG
TAGGCTCATAGACTTCCTCTCTAAGAGGGTATGTTACATGAAAAATTAGGGGAAAATTAGATGTGTTTACTGAGATTAGA
TGGTTGATGATAGTG-CGGATACTTGGCCTATCGAGGAACTGTGCCTCGATGGAATTTGAGACTTCTTCCCACTATTCAT
GAGCTTTAGGTTGTGTTCTAATAGGCTGATGCTTCCTCTCTAAGAGAATATTTTTAGTACATGAAACTTAGGGGAAATGA
GATGTGCTTCCTGTTAGCTGTTTTGCTATTGAAGCATGAAGAAAAAGTCGATGAATTGTCCATTTGGTGTGTGAAAACAT
AACCTTTCAATCATATTGGCTTTGGTGCCTTTGTAAGAAGAGAATAAAATTGCTTCTTCCAAGGTAAACCAAGTGGCAGG
AGTTAAAGAATTG---GTGAATAGATGTACGGATAAGCTGTAGGGAGGAAATACAAACTTGATCCTGATACCCTATAGTG
TCACATGATGCTTGA---AACATAACATAACATAACTGCCTTTTTGCATATTAACAATGTACCATGAGGTTACTACATGG
TTTTTCAGTAAATTTGTTCCAATACTGTAGTTATTCCATTTCCAAGAGAAGGGATATCACCCTGTTTTATATTGAGAAAA
TTACTGGGGTTAC-AGTTACATGATCATTAGTTCTTCAGTTCATGAATTTGTACTGACATCAAGCTTATGCAGGCACAAA
GGGCTTCCCAACGAAGAGATGTCTTCCACACCAGTTTTCTTACGCCACCTATCATAGCGGAGGCTATGCTAGCAATTGAA
AAGTTAGCTGATATCAAAGCAGTAGCTCAGGGGGGCTATCCACAGGTGGAATTCAATACAATCAAAGGAGTTGTTGATAG
CTACCATTTTTACGTGAATAATAGCTTATATTAACCTATATACCTTGTTTTTCTCATCTTCATATCCATTTAGGCTGAGC
GGTGCCGAATTTCAGCTGGGCATCCAGACTCTATGAGAAGTGACCCAGATGTAGTTGCTGCTTTGAGGTTTTCAAGAATT
TATAT--TGTAGCCATCACTATCTGTTATGTAAACTGACTTTTAAACCTTTCCTAGCATCTCCGGGAATTTCCGATTGGA
ACCCTGTTCTCATGGTGACTTTCTCGGTGCTATTCTTGGGGCAGGAATTACAAGGGAGAAAGTTGGAGATATACTTTTAC
AGGTCCACACTTTCCACAAATACTCATTTCCCTGAGGCG-TGTCCAGTTTTTCTTTTCCCATCTTATCATCATTTGGGTT
GTCTCTTTGCTTTTCTGTTAGGGGGAAAGAGGTGCTCAGGTCCTTGTTGATCCAGAGCTTGTTGACTATCTGACTTCCAC
ACTAGAAAAGGTAGGTATCTCACAAATTATGTTGCCAATTTTTCGTTTGTGCGAGCTGGATGTGCATGCTCCCACTTATG
TGCCTATGTTTATATAATGGATCAGATCTGAGATATGGTTCAG-------TGACATGCATTCAATGCTATGCAAAGCACA
TAACCTGTATATTACATGCTGATGTGTTTGTTTTTACTCGACATTTTAAGAAATTAGAGCACATTGCGATCCTAATTTTT
ATGTCCGCTTAGATCGCTGAAAATCTTTGTTCTTTTTATGTTAGTCTTTTGTATTTGTGAGTTTTGACACAAATTTGTCC
GCGAAGAATCTCCCCATGAACTTTGACTGTTGTTCATGATTTTTTT-AGTATCATTTTCCTTGTTGGAAGTGCAGATTCT
TCTAATTATGGTTTACTCTGAATGATATTTTATTGAACAGGTGGGGAAAGTTGGTGTTTCATGCACCCAGATTCCCTTGC
TTGCTATAGAGTATGAGCCACCAAGGTTTGTTTCACATGTCATCGTGGATCTTAGTGTATATACTGCATGCTTAAGATCA
CAACAACTTATGATGTAATACCCTGGAATAAGCTACTCAGCACTGCCATTGAACTGCAGGACCAAATCTTTTAAAACTGT
AGAATCATCACTTCGGGTTGATGCTGTGGCCAGTGCAGGATTTAAAATATCACGCACAAAGCTTGGTAGCATGATCAGGT
ATGAACTTTGAGCTGCTAATTTGTTACTTTATGTTCAGTAAGGCTTTTCTTTACCTTACCATGAATAGTTGGACATTCTT
ATCTTATTTTGGACGGTGCTGTTAGCCTGTTGGTTTTTCTAATTACCATGCACAATGCAATTCATTGTAAGTTTCCTTTT
CTGTTTGGTAAGTTCTGGAGATGTTCGTGTGAATTGGTCACTGGTTTCGAAAAGTGGAGCTACCCTCAAGGCTGGGGATG
TTGTTTCTGTCAGTGGGATGGGGAGATTAAAGGTAAAATCAATCACCAGTTATTGTCTTTTTGAATAAATGTTTGATGAG
CCTTGAATTCTCTTGAGCAAATTAGGATAAAATTATGATGTTACTGTTGCACCTAGTTTACGCTGATGGAACAATTTTTC
TGGTGCTTCAGAGGCATTCCACCAGTGCAGGTTTTTGAGAATATGTTGGGCCTTGCATTGTATTCTGTATGCAGTTAAGT
TGGACCG--CCCATTCTATATGTTTAGTGTTTGTTGTTTTTTTAATCCTTTCCTTCTTTATTCTGTGAACCATACTCCAA
AATGTTAAATGGAAAAATTACAACCTTTCGCTGTCCACTTATATTCATAATATGTTTGTTGATATATGCTGACAAT----
--TAGATCTTTGCATTATATGATATGCAGAAATACCCATTATAGCATGCTATGGAAGATGTATGCATGCTACTAGAGATG
TCTAATACATTTTCAAATCTCTGTTATATGCTTGAGTTACTTCAAGTCATTATTTCCTGTAGATTGGGGAAATCGTGACT
ACGAAGAAAGGCAAATATGTCATTCAGTTGATTCAATATTTGTAGGCCCGTGACTGATCAATTGTTCTCTGAAGAATACC
TGACTGGTGGTATGCATTTTGT----TACCTACTATTTGAAGAAAATTCTCTTTGTTAAGCTTCATGCACTAGCCAACGC
AACCAAAAGTCCGAACTGATGGAAAGGGCTACGCAATCCACATATACACTTCAACACTCTTGTTCACGATTCAAAAAGTA
AAGCCGAAAATTTCGCTCTGCTTAGTACAGTAT-ATTCTAAGATTCATCAAGTAATTACTTCATTTTGCTTAAATTAGCT
GGGTTTAACATTTGTGAAGAAACTCGTGAGTATATTGTTAGGGTGTAATTGTATTGCTAAGTCATCACTGAGGCAGTATA
AAATATCATACTATGCTGCAAAAAACAATTTATTTATGATATGTGTGCTTA---------CCGTATTTTGGATT-GCACT
CTTCTACTCTTTACTGTGCACTTTGCTTTCAGAGTTTGCAAAGTGCTCAGTTGCTTACACAAGCATAAGGGCTGCAGCTG
CCTGCAAA-----------------TATTTACGATGAAACTGATCCATAATATTTAGAAGGGAAAAGGACAAGTGGACAG
TACATGTAAAGTATATGTGACAGCTTATCTTTAAAGTCCAGATCAAATTGAGAATGAAATTTAGAAGGTACGCAATTCGC
TTATAGTTGCAAGTCCATATGTTTTGAATGCATTTATGATGTAAATGGTAGGAGTATCATATATGCAAAGATGGGTAGCT
GCACATATAGGCTTGGAAAATCTGCTTCCTTTCATCGGAGTTCTTCATGTGGCAGCTACCACTGATGTAGTCTTTTTGGT
ATTTTGTAGGATCAAAGTCTCTCTGTGAACTCCAACTCGTGTGAGGACTCGATCTGCTTTAGGGCAAAAAGGTGAACAAA
AAGTATATGTTTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>SNPs
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
------------------S---S-----------------S---------------------------------------
--------------------S-----------------------------------------------------------
---S----------------------------------SSS---------------------S---S-------------
---------------S-----------S------------------------------S---------------------
--------S--------------S--------------------------------------------------------
----------S----------------------S----S-----------------------------------------
--------S---------------------S--------S-----S----S-----------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------S-S------------------------
--------S-S--SSSSSSSSS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S----S----------------------S---------------------
----------S-------------------------------------------------------S-------------
----------------------------------------------------S---------------------------
-----------------------------------S------------------------S-------------------
----S----------------------------------------------------S----------------------
-------------SSSSS-------------------------------------------------------S------
-------------------------S-------S----------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----SS-------------------------------S-----------------------------------------
------------------S-------------------------------------------------------------
---------------------------------------------------------------------S------S-S-
--------------------------------------------------------------------------------
----------------------------------------------------S--------------S---------S--
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----S-----------------------------
----------------------------------S---------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------S------------------------S----------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S------------S-----------------------------------------------S------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------------------------S----------------------SSSS
SS-----------------------------------S------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S------------S----
---------------------------------------S-------------------------S--------------
-----S------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------S-S-----------S-----------------------S----------------
---------------------------S--------SS------------------------------------------
-------------S-----S------------------------------S---------------------S-------
--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_867
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TGCAACACCAGTACACTCCA-------------
--------------------------------------------------------------------------------
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>reverse_2948
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-------------------------------------------------------------------ACTCCCACTTGTG
TGCCTATG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1631
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-----------TAGTGCGGATACTTGGCCTG-------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2982
--------------------------------------------------------------------------------
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---------------------GCAGATCTGAGATATTACATGCTGA----------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_1636
--------------------------------------------------------------------------------
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----------------CGGATACTTGGCCTGTCGAC--------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3171
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--------------------------------------------------ATATTTGTGAGTTTTGACCCAAATCTG---
--------------------------------------------------------------------------------
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>forward_2933
--------------------------------------------------------------------------------
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---------------------------------GCCAATTTTTCGTTTGCGCA---------------------------
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>reverse_4006
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-----GTTGAGAGGCATTCCACCAGT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_2958
--------------------------------------------------------------------------------
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---------------------------------------------------------GGATGTGCATACTCCCACTTG--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_4920
--------------------------------------------------------------------------------
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---------------------------------------GAAGTGCTCAGTTGCTTACACA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
