>input_sequence_22448
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-------------------ATGGAGCAGCCGCCGTCCTCGCCGCCGCCCCCCGCGGCGGCCACGGCCACGGCAGCGCCTA
CTCCCGCTCCCGCT------TCCGCTCCCATTATCCTGTCGGACTCGCCTCCTGCGGCCGCCGCGGTGGCGGAGCCCGCG
CTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGGCGCGCGCCCCCGAGGACCCCGACAAGAAGGTTCCCATCCCTCA
CCCGCTTCGTGTATTCGATATGCAGTAGCTTCTGTACGGCGTGCTTGCCCCGCATTGGGGGTTGGGGGGAGCTAGGGTTT
TGACGGCCGTAGTCTGCGTGTCTGTGCCAGTATGTAGCTAGGCTAACCCGGGGCAGACGAATTATGCGGCATCATTCGTA
AGTGGTGTTCTG-AAAAATGAATAGCTGCTAGAATGCTCATTGTTGCAGTTGAAAA------------------------
---------------------------------------------------ATGGAGTGACGGCAAATGTGTGCAAGTGG
ACTTTCATTTGGAACGTTTCATCTGTTCTGCTCCGTGCTTGTAATTGAGTTGATGAGTACTATGACTTATGAGAGGCAGA
TTTGACTAGAGTGTGCAGGCCTACTTGATCCAAAGACATTAGGCATCCGTCAGTAATAAATCACAAAATGAATGATGCTA
GAATGTTTACTGCTGCAGTTGGGAAACGGTCAGAACGGGATCCAACACAAAGTTCTATTTAACTGCTGTTTTCTTAACAC
TAAGTTACAGGCTGTGTAATCTGATAATGTGTTTGAGAACTGTGCCTGCCGTTTTCTTAACCTGACTGTCTTGTTGGTTT
GCTCTGCTCATTCCCATGAC-TAAGTTGATGAGGGTTGAGAGAATGGGTCAGAATATTTGGGCGTGTAACAAAGTGAATG
CCTTGTGTTTGGCAGAGGATCCTTCTTGTCATGCTAGTTGCTAGTATGTCTTTGCGTAGAACAACATCTTAGCC------
-------TCCAATATAAAGGTTACCTGCTTCCTAGGCATGAAGAGCGTGTCAAGAACTAAGCATTTATCGGGGCACATCT
TACAGTTATGTAAAGGCTCCTGTATGATGTTTGATGAATCACACGATAGGATACAATTATGGCAGATTTCATCTGTTGGG
GTTTTCATAGTTAGTATGATGTTTGATGAATCACACGATAGGATACAATTATGGCAGATTTCATCTGTTGTGGTTTTCAT
AGTTAGATGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAGACCTTGTTGTCCTTCAAGTTCTAATTACTTTCTGATTAACTGTTACCAAAATCACTTC
GAAAAGCTCTAGAATTGTTAGGCATGTCACTGAGCAAGTAACT-TGTGTTTGGTAAAGAATTCTCGTGTCATGATAA-TG
CTACCACCTCCTTGCATAGAACAACGGCAGATTATCCTAAAGTATGGTGGCCCAATATAAAATATCACCTGGTTCCTATG
CTTGAAAAGCAGGGCAAGAACTAAGCATTCGTTAAAGTGCACCTTCCGGTTTTGTTGAGACTCAAGTATGATGTTTGATT
AATCACACAATAGGATTGGATGTTGCACATTTCATCCATCGTTATTTTGATGATTAGACATTATTGATATGTAATCTATA
ATGATTTTCTGATTAACCGTTGCAAAAATCCCTTGAACAGAATAAGAAGCTCAAGGATGTGGAGATCAGTTTTCCAATTG
TCTATGGAACCATTTCATTTTGGCTTGGCAAAAAAGCAAGCGAGTAAGCATTTGCTTCACAGAAACTTATTTTTGTTAAT
TTCTTGAAT----CAAAATTTTACAACTTCAAACTGTAAATACAGTGCCATATTTTTATGTTCTTACCTGTAGCGAAAAT
TGTCTGAAGAAAAAATATTTTTCCCTTCTAGGTACAACTCTCACAAATGGACTGTGTACATCCGTTCTGCAACAAATGAG
GATTTGAGTGTCATAGTTAAGCGTGTAGTGTTTCAGCTTCACCCAAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACC
GCCTTTTGAGTTGTCCGAATCTGGATGGGGAGAGTTTGAGATTGCAATAACCCTTTATTTTCACAGTGATGTCTGTGAGA
AGCGTCTGGACTTGTAAGTGTTGAAGTCCTTTTTTGAACA---G-TTTTTTTTTTGGGAGCGAATACTTAGGTGATAGAG
TTGGTGCAGGTTTCATCAACTTAAGCTGTATCCGGAAGAGGATGCCGGACCTCAATCAACAAAAAAACCTGTTGTAGTGG
AAACATATGATGAAGTTGTCTTCCCTGAGCCCACTGAGGCCTTCTTCCTGCGAGTGCAAAATCATCCTGCTGCTACTGTG
CCCAGGCTACCTCCTGGTATGACATTGTCTTCTCCAGGTATGTGGCTTGCTGGCTTGTACTTCCTATTTTCTTAGTGGAA
AATGATAAAGTAGCATCTTAATATTTAAATCATCTAGGCCCTATGGAACTTATGTCACATGATAAGAAGCGTTTTGACAC
GAAGGATCATTCTTTGAGCCAGTGGTTCTCGAACTTCTCTGAAGCAGATGAACTATTAAAACTGGCTGCTGCTCGTCAAC
AGGTGAGAATCAGAGCTAGTAGTATCTGTCCTTATT----AGGTGTATATTATAGCTGGCAATGCCGGTAGAAGGCATTA
TTTCCCCATGCGACATAGTCCCACT-----TGTAAGGTTCACTGCTGTAGAGACTTATAATTTTTCCCTTTTGTTGAGAG
TTTCCTCATATGAATTTCGGTCAGCGAATCTGTTTTAGGATAAGCTGTGTGCCAGC------AAACCCAGTGTCTAGTAG
TGGAATTATTCATTCGTTCTGATATGCATATCCTTGCCGTATAACTGGAAACATTTTGCTCTTGGTGTCACTTTCATAGA
GATGTCACACTAGGAATTATTTGGGACCTTGAAACCACATGGTGTTTCCTGTGGCTTTTATTTCATTTTGCTTGTTTAGT
TACGTGGTGTTGCATATAATGGTTCACATACAAACCTGATAGAATTTGCATA-----GAACAGTTAGTCGTGGAAAACAG
CATGCTGTGATTTGAATCGTTACCTTTTTGTTCCTCCAGGTGCAGGCTCACATCGCTAAGCTGAGAAGGCAGCTAAGTAT
GATAGAGGGAATGCCCCAGCAATCCAGAGTCATCTCTGGTCTGTAAAGTTTACTCCTTTTTTT--TTCGGATTAGCAGTG
ACCACATTTGTAAATCGTTCGCTGAAGGGTTTGAAAGGGTTTGAATTGATGACGAGCTTCACAATGTTTTATGTCCAGGT
CCTGGTCAACAGTTTGGGCACGGCTAATGGAATGGTAG------------------------------------------
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>chr7D_1_TraesCS7D01G072400
GACACAACAGTTTGCAGTGGAAGGAGAGCATTGCCCAATGGACACGTACGGTCTCCTTGGGGAGATC---------ATCG
ATCGATCGAT---TTGATCGGGAAGGATCCACCACGTGCCCTGGCCCATGGGATCGAGATGGCAATCCATCCAGCCAGAA
AGAGCGAGCGATCGACCGATCGATGCGTTTGCCAGGAATGATGAGCAACGCTTGCTTGGGCACACGCACGCACACTGTCG
GGCGGATCCGGGAAAAGGTCCTTCCCATGCAAGATCCGGAAGCTCATACTCGTGTATATCAAGGATTCAAGAGGAAAAAA
ACGAGAAGAAGTCTCTCTGCACCAACATCACATTGGCCTCTCAGTATCTGATTCTGATCCCGTCTCGTCGACATCTCGCT
CGGCGACCGATGGAGCATGGCGACGGCGACGGGTGGCGTTCTTTTTTGAAACAAACGGGTGGCGTTCTGGGATATACTAT
GCCCGGCTTCTCAAATCTCAATCGTGCAGTACGTCCTCGGGTCAGGTCCATGGGGTGGGTCGGGTGCACGGACGCACGTC
GCGCGGGGCGTGGCATGTCGGGGCGCAGCAGCTGGTGGCCAGCCGGCCGGATCGGCATG---------------------
--------------------------------------------------------------------------------
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----------TCAGTGCATTTGTCTGCCCTATTTTTTCATGTATTTGTTTGAGCAACTGCCCTCTTTTTTCAGAGACAGA
GCTAATGTTTACTGGGCCTACAGGCTATTAATGATCCACCAAAGCCCAGGCGAGGCAACCCATGGGCTCACTCTATGGAC
CGGGCCCGTGCGAACTATGTGTACCGCGCCATTCCGCAGCCCAACACGCCACGTATACGACCCTAA--------------
-----------------AGGTTTACTTTTTCTCCAGAACATCCAACGTGCCTAACCCAACCCGACCAGACCGACCGACCG
ACCGATCCGAACCAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
CCAAACCAAACCACCTTCCCGTCGTCTCCCTCCCCACCGCCGCGGCGAACTGACCCACCCGACCCGACCCGACCACCATC
CCCAAACCCTCGCC-GCCGATGGAGCAGCCGCCGTCCTCGCCGCCGCCCCCCGCGGCGGCCACGGCCACGGCAGCGCCTA
CTCCCGCTCCCGCT------TCCGCTCCCATTATCCTGTCGGACTCGCCTCCTGCGGCCGCCGCGGTGGCGGAGCCCGCG
CTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGGCGCGCGCCCCCGAGGACCCCGACAAGAAGGTTCCCATCCCTCA
CCCGCTTCGTGTATTCGATATGCAGTAGCTTCTGTACGGCGTGCTTGCCCCGCATTGGGGGTTGGGGGGAGCTAGGGTTT
TGACGGCCGTAGTCTGCGTGTCTGTGCCAGTATGTAGCTAGGCTAACCCGGGGCAGACGAATTATGCGGCATCATTCGTA
AGTGGTGTTCTG-AAAAATGAATAGCTGCTAGAATGCTCATTGTTGCAGTTGAAAA------------------------
---------------------------------------------------ATGGAGTGACGGCAAATGTGTGCAAGTGG
ACTTTCATTTGGAACGTTTCATCTGTTCTGCTCCGTGCTTGTAATTGAGTTGATGAGTACTATGACTTATGAGAGGCAGA
TTTGACTAGAGTGTGCAGGCCTACTTGATCCAAAGACATTAGGCATCCGTCAGTAATAAATCACAAAATGAATGATGCTA
GAATGTTTACTGCTGCAGTTGGGAAACGGTCAGAACGGGATCCAACACAAAGTTCTATTTAACTGCTGTTTTCTTAACAC
TAAGTTACAGGCTGTGTAATCTGATAATGTGTTTGAGAACTGTGCCTGCCGTTTTCTTAACCTGACTGTCTTGTTGGTTT
GCTCTGCTCATTCCCATGAC-TAAGTTGATGAGGGTTGAGAGAATGGGTCAGAATATTTGGGCGTGTAACAAAGTGAATG
CCTTGTGTTTGGCAGAGGATCCTTCTTGTCATGCTAGTTGCTAGTATGTCTTTGCGTAGAACAACATCTTAGCC------
-------TCCAATATAAAGGTTACCTGCTTCCTAGGCATGAAGAGCGTGTCAAGAACTAAGCATTTATCGGGGCACATCT
TACAGTTATGTAAAGGCTCCTGTATGATGTTTGATGAATCACACGATAGGATACAATTATGGCAGATTTCATCTGTTGGG
GTTTTCATAGTTAGTATGATGTTTGATGAATCACACGATAGGATACAATTATGGCAGATTTCATCTGTTGTGGTTTTCAT
AGTTAGATGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAGACCTTGTTGTCCTTCAAGTTCTAATTACTTTCTGATTAACTGTTACCAAAATCACTTC
GAAAAGCTCTAGAATTGTTAGGCATGTCACTGAGCAAGTAACT-TGTGTTTGGTAAAGAATTCTCGTGTCATGATAA-TG
CTACCACCTCCTTGCATAGAACAACGGCAGATTATCCTAAAGTATGGTGGCCCAATATAAAATATCACCTGGTTCCTATG
CTTGAAAAGCAGGGCAAGAACTAAGCATTCGTTAAAGTGCACCTTCCGGTTTTGTTGAGACTCAAGTATGATGTTTGATT
AATCACACAATAGGATTGGATGTTGCACATTTCATCCATCGTTATTTTGATGATTAGACATTATTGATATGTAATCTATA
ATGATTTTCTGATTAACCGTTGCAAAAATCCCTTGAACAGAATAAGAAGCTCAAGGATGTGGAGATCAGTTTTCCAATTG
TCTATGGAACCATTTCATTTTGGCTTGGCAAAAAAGCAAGCGAGTAAGCATTTGCTTCACAGAAACTTATTTTTGTTAAT
TTCTTGAAT----CAAAATTTTACAACTTCAAACTGTAAATACAGTGCCATATTTTTATGTTCTTACCTGTAGCGAAAAT
TGTCTGAAGAAAAAATATTTTTCCCTTCTAGGTACAACTCTCACAAATGGACTGTGTACATCCGTTCTGCAACAAATGAG
GATTTGAGTGTCATAGTTAAGCGTGTAGTGTTTCAGCTTCACCCAAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACC
GCCTTTTGAGTTGTCCGAATCTGGATGGGGAGAGTTTGAGATTGCAATAACCCTTTATTTTCACAGTGATGTCTGTGAGA
AGCGTCTGGACTTGTAAGTGTTGAAGTCCTTTTTTGAACA---G-TTTTTTTTTTGGGAGCGAATACTTAGGTGATAGAG
TTGGTGCAGGTTTCATCAACTTAAGCTGTATCCGGAAGAGGATGCCGGACCTCAATCAACAAAAAAACCTGTTGTAGTGG
AAACATATGATGAAGTTGTCTTCCCTGAGCCCACTGAGGCCTTCTTCCTGCGAGTGCAAAATCATCCTGCTGCTACTGTG
CCCAGGCTACCTCCTGGTATGACATTGTCTTCTCCAGGTATGTGGCTTGCTGGCTTGTACTTCCTATTTTCTTAGTGGAA
AATGATAAAGTAGCATCTTAATATTTAAATCATCTAGGCCCTATGGAACTTATGTCACATGATAAGAAGCGTTTTGACAC
GAAGGATCATTCTTTGAGCCAGTGGTTCTCGAACTTCTCTGAAGCAGATGAACTATTAAAACTGGCTGCTGCTCGTCAAC
AGGTGAGAATCAGAGCTAGTAGTATCTGTCCTTATT----AGGTGTATATTATAGCTGGCAATGCCGGTAGAAGGCATTA
TTTCCCCATGCGACATAGTCCCACT-----TGTAAGGTTCACTGCTGTAGAGACTTATAATTTTTCCCTTTTGTTGAGAG
TTTCCTCATATGAATTTCGGTCAGCGAATCTGTTTTAGGATAAGCTGTGTGCCAGC------AAACCCAGTGTCTAGTAG
TGGAATTATTCATTCGTTCTGATATGCATATCCTTGCCGTATAACTGGAAACATTTTGCTCTTGGTGTCACTTTCATAGA
GATGTCACACTAGGAATTATTTGGGACCTTGAAACCACATGGTGTTTCCTGTGGCTTTTATTTCATTTTGCTTGTTTAGT
TACGTGGTGTTGCATATAATGGTTCACATACAAACCTGATAGAATTTGCATA-----GAACAGTTAGTCGTGGAAAACAG
CATGCTGTGATTTGAATCGTTACCTTTTTGTTCCTCCAGGTGCAGGCTCACATCGCTAAGCTGAGAAGGCAGCTAAGTAT
GATAGAGGGAATGCCCCAGCAATCCAGAGTCATCTCTGGTCTGTAAAGTTTACTCCTTTTTTT--TTCGGATTAGCAGTG
ACCACATTTGTAAATCGTTCGCTGAAGGGTTTGAAAGGGTTTGAATTGATGACGAGCTTCACAATGTTTTATGTCCAGGT
CCTGGTCAACAGTTTGGGCACGGCTAATGGAATGGTAGCTGCTGTAAGGAAGATGCCGAAACCTGACAACAACTCGCTAA
CAGAATG------------------TGACGTCTTAAGCTCGCAATTGATGTTTAGTGCTGGGCAGTGTGCATAAAGCGCA
ATCTATGGATTGTACCGCCTTTGTGCATTTTGAAATCAACGGGAGCATG-------ATGTACTGCACA------------
-----------TTTTCTTTTATGTTCCAGTAGAAGCATAGCACAGT-----GGTGCAAAATCCATTTTACTAACATAATG
GAACGTGCCTTGCTTTGTGTC-GTACC-----AGTAAGTGTTCATTTCCAAAATCATTTATAACAGTTAAATGAAGAGAC
GCTAGTCTGACCGTTAGTTGAAGTGGATACATATTAAAACATCTGGCGGTGAACAAGTC-TAACAAGTTTCTTTTAGGGG
AATGCCATACGGTGTCTTGCAAT---------------------------------------------------------
-------------------------------------------------------------------GTTTATTAGCGTA
TTCGAATT-AGTGTGTCTTGCAATGTTGTGCGCCACCATGTTGGCCTCCCCTGGGCAATGCTGAAAAGAAACCATACAAA
ATTTCAATGATCCCATCTAA----------------------TAGTAACGTTCATCTTTCATTGACCACGAGGCAGCCAA
AAGATCCGAAAAGGCAAAACACGGCCCAAAATAACATGTTCGGTAGGTTGCAAACCATCTCACCATGATTATTTCTTGCA
CGATGGACCTCAACACAGCTCTCCCTATTT-AATTTTCCAGCTACTTGCTCTACCGATTGTGCTAA-AAAAAAGCTAGTT
GCTCTACCATTAGAGCATCATCAACCATGGGTGCAACCTTGTAGAAGCAGGAACATAGACCAGGGATCATAAATGTCATC
AGCTTCGGGTTAAAATCAGCCTCACTGGTCCCTCCCAACTCTTGAGAACCTACACCACCAACAGGATTTCCACTCGCTTG
ATAGATGCTCCCTCCGTTTCTAAATATAAGACCTTTAGAGATATCATCAATATGGATTACAC--------------ACGG
ATTTAGAGTGTAGATTCACTCATTTTGCTCCGTATATAGTCCATATTGGAATCTCTACAAA
>chr4A_13
TGCAGTG-----------GGAAGAAGAGCATTGCACAATGGACATGTACGCGCGCTCCGCTAGCTAGCTGCTGGAGATCG
ATGGATCGATCAATTGACCGGGAAGGATCCACCACGTGGCCTGGCCCATGGGATCGAGATGGCAATCCATATCTCCAACC
AGAACGAGCGATGAT------------TTTGGCAGAAATGATGAGCAACGCTTGCTTGCCCACACGCCCG------GTCA
GGCGGATCCGGGAAAAGGTCCTTCATATGCAAGATCCGGAACCTCATACACCTGTATACTATCAAGATAGATCCACTTTG
TGGACCGTGGAGGTTCCGATGTTGAGGTTACCGACACACACGTGGTCGCAGAAAAGGTGATGACTGTGCGTGAGAAGGTC
GATGAGATTCTCTTTTAGGTTGAGCTTCACAGCTTGCTCGCACGTTTGGAGAGGGTTA----------------------
GCCCTGGATCTGGAAAGAAGATTGTGGAGGAGGCCCTCAGAAGCCAAACAAAGAAGTGTGACGCCACGGGAAAGGCGCCC
GCAGCTGCTTGATGATTCCTTGGATTCTCGTGGTGCGTGTGGTCTTCAGCGGATTCTCTCGCCGGGGATTTCTTTTGCGG
TGTAGCAGTGGGTTGGTGGTCGTTGCGTGTTGTGGGGATTGGTGGGTGTTGCTGATCATGCAAGAAGGTTCATAGGGGTT
AATGTATGTGCGCATGTGCGTTTGTGCTATGACATAAAGAAAGAAAATAGAGAAGCCTGAGGATCGGTGCTATTATTACA
AAAGAAAAACAAACAGAAATGAACTTTTTCCTTAGGAAACAGAAGTAACCTATATTGTGTTTCGGTGCAATATTTTTGAG
GCAATGTGTTTCAGTGCATTTGCCTGCCCTATTTTTTCAAAAAAAAA-TTGAGCAACGGCCCTATTTTTTCAGAGACAGA
GCTAATGCTTACTGGGCCTATAGGCTATAAATGATACACCAAAGCCCAGTCGAGCGAGGCAA----CTCACTCTATGCAC
CGGGCCCGTGCGAACTAATGTGTACTGCCCATTTCGCAGCCCAACACGCCACGTACGATCCCTAGGATCGTCTCAAAAAA
AAAAACCGTACGATCCTAGGTTCTTTTTTTCTCCAGAACGCCCAGCGTGCCGAACCCAACTCGACCAGACCGACCGACCG
ACCGATCCGAACCAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
CCAAACCA-----CCTTCTCGTCGTGTCCATCCCCACCGCCGCGGCGGACTGACG----------GACCCGAGCTCCACC
CCCAAACCCTCGCCGGCCGATGGAGCAGCCGCCGTCCTCGCCGCCGCCCCCCGCGGCGGCCACGGCCACGGCTGCGCCTA
CTCCCGCTCCCGCT------TCCGCTCCCATTATCCTATCGGACTCGCCTCCTGCGGCCGCGGCGGG---GGAGCCCGCG
CTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGGCGCGCGTCCCCGAGGACACCGACAAGAAGGTTCCCCTCCCTCG
CCGACCTCGTCTATTCGATACGCGGTAGCTTCTGTACGGCGTGCTTGCCCCGCATTGGGGGCT--GGGGAGCTAGGGTTT
TGAGGGGCGTGT--------TCTGTGCCAGTAAGTAGCTAGGCCAAGTTGGATCTAGCGCATTACGCTGCATCATCGATA
AGTAGTGTTCTCCAAAATTGAATGGGTGCTAGAATGCTCATTGTTGCGCTTGAAAATTGAATTGAACTGCTTGCGCGAAG
TTGCATCGAGTTGTGCCGCCTGATAGTTTGATAGCTGAGCTTTGCCGTTACATGAAGTGATGGCAAATGTGTGCAAATGG
ACTTGTATTTGGAACGTTCGATATGTTCTGCTCTGTGCTTGTAATTGAGTTGATGAGTAATATGGCTTATGAGAGGCAGA
ATTGACCAGAGCGTGCAGGCCTACTTGATCCAAAGACATTAGGCATCCGTCAGTAATAAACTGCAAAATGAATGATGCTA
GGATGTTTGCTACTGCAATTGAGAAACGACCAGAACGGGATCCAACATAAAGTTCTATTTAACTGCTGCG---------C
TAAGTTTCGGGCTGTGTAATCTGATAGTGTGTTTGATAAATGTG--TGCCGTTTTCTTAACCGGGCTGTCATGTAGGTTT
GTTCTGCTCATTCTCATGATTTAAGTTGATGAGGGTTGAGAGAATGGGCCGGAATATTTAGGCATTTAACCAAGTGAGTG
CCTTTTGTTTGGCAGAGGATCCTTCTTGTCATGCTAGTTGCTAGTATGTCTTTGCGTAGAACAACATCTTAGCC------
-------TCCAATATAAAGGTTACCTGCTTCCTAGGCATGAAGAGTGTGTTAAGAACTAAGCATTTACCGGGGCACATCT
TACAGTTATGCAAAGGCTCCTCTATGATGTTTGATGGTTCACACGATAGGATTCAATTTTGGCACATTTCATCCGTTG--
----------------------------------------------------------------------TGGTTTTCAT
AGTTAAATGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAGACCTTATTGTCCTTCAAGCTGTAATGACTTTCTGATTAACTCTTAGCAAGACCACTTC
AAAAAGCTCTAGAATAGTTTGGCATGTCACTGAGCGAGTAACT-TGTGTTTGGTAAAGAATTCTTGTGTCATGCTAATTG
CTACCATCTCCTTGCATAGAACAACGGCAGATTATCCTACAGTATGGTGTCCTAATACAAAATATCACCTTATTCCTATG
CATGAAAAGCAGGGCAAGAACTAAGCATTCGTTAAAGTGCATCTTCCAGTTTTCTAGAGACTCAAGTATGATGTTTGATT
AATCACACAATATGATTGGATGTTGCACATTTCATCCATCGTTATTTTGATGATTAGACATTATTGATATGTAATCTATA
ATGATTTTCTGATTAACCATTGCCAAAATCCCTTGAACAGAATAAGAAGCTCAAGGATGTGGAAATCAGTTTTCCAATTG
TCTATGGGACGATTTCATTTTGGCTTGGCAAAAAAGCAAGCGAGTAAGCATTTGCTTAACAGAAACTTATTTTTGTTAAT
TTCTTGAAT----CAAAATTTTACAACTTCAAACTGTAAATACAGTGTCATATTTTTATGTTCTTACCTGTAGCGAAAAT
TATCTGAAGAAAAACTGTTTTTCCCTTCTAGGTACAACTCTCACAAATGGACCGTGTACATCCGTTCTGCAACAAATGAG
GATTTGAGTGTCATAGTTAAGCGTGTAGTGTTTCAGCTTCACCCAAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACC
ACCTTTTGAGTTGTCCGAATCTGGATGGGGAGAGTTTGAGATTGCAATAACACTTTATTTTCACAGTGATGTCTGTGAGA
AGCGTTTGGACTTGTAAGTGCTGAAGTTCTTTTCTTAACA---GATTTTTTTTTTGGGAGCGAATACGTAGGTGATAGAA
TCTGTGCAGGTTTCATCAACTTAAGCTGTATCCGGAAGAGGATGCCGGACCTCAATCAACAAAAAAACCTGTTGTAGTGG
AAACATATGATGAAGTTGTCTTCCCTGAGCCTACTGAGGCCTTCTTCCTGAGAGTCCAAAATCATCCTGCTGCTACTGTG
CCCAGGCTACCTCCTGGTATGACATTGTCTTCTCCAGGTATGTGGCTTGCTGGCTTGTACTTCGTATTTTCGTAGTGGGA
AATGATAAAGTAGCATCTTAATCTTTAAATCATCTAGGCCCTATGGAACTTATGCCACATGATAAGAAGCGTTTTGACAC
GAAGGATCATTCTTTGAGCCAGTGGTTCTCGAACTTCTCTGAAGCTGATGAACTATTAAAACTGGCGGCTGCTCGTCAGC
AGGTGAGATTTACAGCTACCAGCATTTGTCCTTATTTCTGAGATGTATATTATAGTTGGCAATGCAGATATAT-------
------------------TCTAGCCATACATGTAAGGTTCACTGCTGTAGAGACTTATAAATT--------------GAG
TTTCCTCATATGAATTTCAGTCAGTGAATGTGTTTTAGGATAAGCTGTGTGCCAGTAATAGAAAACCCAGTGTCCAGTAG
AGGAATTATTTATTCGTTCCAATATGCATATCCTTGTCGTAACACTGGTAATATTTCGCTCTTGGTGTCACTTCCATAGA
GATGCCACACTAGGAATG-TTTGGGACCTTCAAACCACGTGGCCGTTCTGGTGTCTTTTATTCCATTTTGCTTGTTTAGT
TACACGGTGTTGCATATAATGGTTTACATACAAACCTGATAGAATATGCGTAGACATGAACAGTTAGTCATGGAAAACAG
CATCCTGTGATTTGAATCGTTCCCTTTTTGTTCCTCCAGGTGCAGGCTCACATCGCTAAGCTGAGAAGGCAGCTAAGTAT
GATAGAGGGAATGCCCCAGCAGTCCAGAGTCATCCCTGGTCAGTAAAGTTAACTCCTTTTTTTC---CGGATTAGCAGTG
ACCACATTTGTAAATCGTGCGCTGAAG----------GGTTTGAATCGATGACGAGCTTCACAATGTTTTATGTCCAGGT
CCTGGTCAACAGTTTGGGCATGGCTAATGGAACGGTAGCTGCTGTAAGGAGGATGCTGAAACCTGACAACAACTCGCTAA
CAGAATGTGATGAATGTGTCTTCATTGACGTCTTAAGCTCGCAATTGATGTTTAGTGCTGGGCAGTGTGCATAAAGCGCA
ATCTATGGATTGTACCGCCTTTGTGCATTTTGAAATCAACGGGAGCATGCTATATTGTGTACCTGCCTTAAGTTATCACC
CTCTCTGTTCCTATTCTTTTATGTTCCAGTAGAAGCATAGCACAG----GGGGTGCAAAATCCATTTTGCTAACATAGTG
GAATGCGCCTTGCTTTGTGTCAGTACC-----AGCAAGTGTTCATTTCCAAAATCATTTA--ACAGTTAAATGAAGAGAC
GCTGGTCTGACCGTTAGTTGAAGTGGATACATATTAGAACATCTGGCGCTGAACAAGTCTTAACAAGTTTCTTTTAGGGG
AATGCCATACGGCACACTTTATTACTCCCTCCGTTTGGAATTACTTGTCTCGGAAATGGATGTATCTAGAACTAAAATAC
GTCTAGATACATCCATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTACTTCAAAAGAGTTCCATCGTTTATTAGCGTA
TTCAAATAAAGTGTGTCTTGCAATGTTGTGCGCCACCATGTTGGCCTCCTGTGGGCAATGCTGAAATGAATCGAAACAAA
ATTTCAATGATCCCATTGCAAGCTTGCATAAGGTCTGAGAACTAGTAGCATTCATCTTTCATTGACCAAGAGGCAGCCAA
AAGATCCGGAAATGCAAAACATGGCCCAAAATAGCGTGTTCCGTGGGTTGCAAATCGTCTCACCGTGATTATTTCCTGCA
CGATGGACCTCAACACAGCTCTCCCTATTTTAACTTTTCAGCTACTTGCTGTACCTATTGTGCTAAGAAAAAAGCTAGTT
GCTCTACCATTAGAGCATTATCAACCATGGGTGCAACCTTGTAGAAGCATGAACATAGACCATGGATCATAAATGTCATC
AGCATTGGGTTAAAATCATCCTCACTGGTCCCTCCCAACTCTTGAGAACCTACATCACCAACAGGATTTCCACTCGCTTG
GTAGATACTCCCTCCGTTTCTAAATACAAGACTTTTTAGCGAT--ATCAATATGGATTACATACGGATGTATATAAACGG
ATTTAGAGTGTAGATTCACTCATTTTGCTCCGTAGATAGTCCGTATTGGAATCTCTACAAA
>chr7A_621
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------CTGCCCTATTTTTTCCATTTTTTTAG-GAACAACTGCCCTATTTTTTCAGAGAGAG-
-CTAATGTTTA-----CCTATAGGCTATCAGTGATCCACCAAAGCCCAGTCGAGGCAACCCATGGGCTCACTCTATGGAC
CGGGCCCGTGCGAACTATGTGTACCGCGCCATTCCGCAGCCCAACGTGCCACGTACGATA--------------------
---------------CTAGGTTTTTTTTTTCTCGTTCCCTAAAAAAAGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
CCAAACCA-----CCTTCCCGTCGTCTCCCTCCCCAACGCCGCGGCGAACTGACCCACC------------------ACC
CCCAAACCCTCGCC-GCCGATGGAGCAGCCGCCGTCCTCGCCGCCGCCCCCCGCGGCGGCCACGGCCACGGCTGCGCCTA
CACCCGCTCCCGCTCCCTCTTCCGCTCCCATTATCCTCTCGGACTCGCCTCCCGCGGCCGCGGCGGG---GGAGCCCGCG
CTGACCGCCGCACAGAAGGCGCTCCGCTCCAAGCCGGCGCGCGCCCCCGAGGACCCCGACAAGAAGGTTCCCCTCCCTCA
CCCACCTCCTGTATTCGATATGCAGTAGCTTCTGTACGGCGTGCTTGCCCCGCATTGGGGGTTGGGGGGAGCTAGGGTTT
TGACGGCCGTAGTCTGCGTGTCTGTGCCAGTATGTGGCTAGGCTAACCTGGGTCAGACGAATTATGCCGCATCATTCGTA
TGTGGTTTTCTG-AAAATTGAATAGCTGCTAGAATGCTCATTGTTGCAGTTGAAAA------------------------
---------------------------------------------------ATGAAGTGACGGCAAATGTGTGCAAGTGG
ACTTCCATTTGGAACGTTTGATCTGTTCTGCCCCGTGCTTGTAATTGAGTTGATGAGTATTATGACTTATGAGAGGCAGA
ATTGACTATAGTGTGCTGGCCTACTTGATCC-AAGACATTAGGCATCCGTCAGTAATAAATCGCAAAATGAATGATGCTA
GAATGTTTACTGCTGCAGTTGGGAAACGGTCAGAACGGGATCCAACACAAAGTTCTATTTAACTGTTGCG---------C
TAAGTTACGGGCTGTGTAATCTGATAATGTGTTTGGTAACTCTGCATGCTGTTTTCTTAACCGGATTGTCATGTAGGTCT
GTTCTGCTCATTCCCATGATT-AAGTTGACGAGGATTGAGAGAATGGGTCGGAATATTTAGGCATGTAACTGAGTCAGTA
CCTTGTGTTTGGCAGAGGATCCTTCCTGTCATGCTAGTTGCTACCATGTCTTTGCATAGAACATCTTCTTAGTCTAACAT
ATGGTGGTCCACTATAAAGGTTACCTGCTTCCTAGGCGTGAAGAACGTGGCAAGAACTAAGCATTTATAGGGGCACATCT
TACAGTGATGCAAAGGCTCCTATATGATGTTTGAGGGATCGCACGATAGGATTCAGTTTTGTCACATTTCATCCGTTG--
----------------------------------------------------------------------TAGTTTTCAT
AGTTAGAGGCTAAGGCTACCCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTTCAAATGGACTACAACATACGGATG
TATATAGACATATCTTAGAGTGTAGATTCACCCATTTTGCTCCGTATGTAGTCTCTTGTTGGAATCTCTAAAAAGACTTA
CATTTAGGAACAGAGGGAGTAGACCTTATTGTCCTTCAAGCTGTAGTTTTCA----------------------------
------------------TAGGCATGTCAGTGAGCAAGTAACCATGTGTTTGGTAAAGAATTCTTTTGTCATAATAATTG
CTACCATCTCCTTGCATAGAACAATAGCAGATTATCCTAAAGTTTAGTGGCCC--TATAAAATCTCACCTGATTCCTATG
CATGAAAAGCAGGGCAAGAACTAAGCATTTGTTAAAGTGCATCTTCCAGTTTTCTACAGACTCAAGTATGATGTTTGATT
AATCACACAATAGGATTGAATGTTGCACATTTCATCCATCATTATTTTGATGATTAGACACTATTGATATGCAATCTATA
ATGATTTTCTGATTAATCGTTGCCAAAATCCCTTGAACAGAATAAGAAGCTCAAGGATGTGGAGATCAGTTTTCCAATTG
TTTATGGGACCATTTCGTTTTGGCTTGGCAAAAAAGCAAGCGAGTAAGCATTTGCCTCACAGATACTTATTTTTGTTAAT
TTCATGAAATAAGCAAATGTTTACAACTTCAAACTGTAAACGCAGTGTCACATTTTTATGTTCTTACCTGTAGCAGAACT
TGTCTGAAGAAAAAATGCTTTCCCCTTATAGGTACAACTCTCACAAATGGACCGTGTACATCCGTTCTGCAACAAATGAG
GATCTGAGTGTCATAGTTAAGCGTGTGGTGTTTCAGCTTCACCCAAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACC
GCCTTTTGAGTTGTCCGAATCTGGATGGGGGGAGTTTGAGATTGCAATAACCCTTTATTTTCACAGTGATGTCTGCGAGA
AGCGCTTGGACTTGTGAGTGCCGAAGTTCTTTTTGTCAACAGTGATTTTTTATTTGGGAGCAAATACTTAGGTGATACAA
CTGATGCAGGTTTCATCAGCTTAAGTTGTATCCGGAAGAGGACGCTGGACCTCAATCAACAAAAAAACCAGTTGTAGTGG
AGACATACGATGAAGTTGTCTTCCCTGAGCCCACTGAAGCCTTCTTCTTGCGAGTGCAAAATCACCCTGCTGCTACTGTG
CCCAGGCTACCTCCTGGTATAACATTGTCTTCTCCAGGTATGTGGCTTACTGGCTTGTACTTCCTATTTTCATAGTGGGA
AATGGTGAAGTAGCATCTGAAGCTTTAAATCATCTAGGTCCTATGGAACTTATGCCACATGATAAGAAGCGTTTTGACAC
CAAGGATCATTCTCTGAGCCAGTGGTTCTCAAACTTCTCTGAAGCAGATGAACTATTAAAACTGGCTGCTGCTCGTCAAC
AGGTGAGAATCGGAGCTAGTAGTATTTGTCTTTATT----AGGTGTGTATAATAGCTGGCAATGCCGGTAGAAGGCGTTA
TTTCCCCATGGGACATAGTCTAGCCACACGTGTAAGGTTCACTGCTGTAGAGACTTACAATTTTTCCCTTCTGCTGA---
-----------GAGTTTCAGTCAGCGAATGTGTTTTAGGATAAGATGTATGCCAGTAATAGAAAACCCAGTGTCTAGTAG
TGGAATCATCCATTCGTTCTGATATGCAGATCCTTGCCGTAACACTGGAAATACTTTGCTCCTGGTGTCACTTTCATAGA
GACGTCACACTAGGAATTATTTGGGACCTTGAAACCATGTGGTGTTTCTGGTGGCTTTTATTCCATTTTGCTTGTTTAGT
TACACGGTGTTGCATATAATGGTTTGCGTACAAACCTGATAGAATATGCTTAGACATGAACAGTTAGTCGTGGAAAACAG
CATCCTGTGATTTGAGTTGTTACCTTTTTGTTCCTCCAGGTGCAGGCTCACATTGCTAAGCTGAGAAGGCAGCTAAGCAT
GATAGAGGGAATGCCCCAGCAATCCAGAGTTATCTCTGGTCAGTAAAGTTAACCCTTTTTTTCCCTTCTGATTAGCAGTG
ATCACATTTGTCATATGCTG--------------AAGGGTTTGAACTGATGATGAGCTTCATAATCTTCTATGTCCAGGT
CCTGGTCAACAGTTTGGGCACGGCTAATGGAACGGTAGCTGCTGTAAGGAAGATGCTGAAACCTGATAACAACTCGCTAA
CAGAATGTGATGAATGTGTCTTCATTGACGTCTTAGGCTCGCAATTGATGTTTAGTGCTGGCCAGTGTGCATAAAGCGCA
ACCTATGGATTGTACCGCCTTTGTGCATTTTGAAATCAACGGGAGCATG-------GTGTACCTGCCTTAAATTATCACC
CC--CTGTTCTTTTTCTTTTATGTTCCAGTAGAAGCGTAGCACATCACAGGGGTGCAAAGTCTATTTTGCTGACATAATG
GAATATGCTTTGCATTGTGTC-GTACCAGTAAAGTAAGTGTTAATTTCCGAAATCATTTA--ACAGTCAAATTAAGAGAC
GCTAGTCTGACCGTTACTTGAAGTGGATACATAT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>SNPs
SS--SSSSSSSSSSSSSS-----S----------S---------S-----SS-S-SSS-SSSSSSSS-------------
--S--------------S--------------------S-------------------------------SSSS---SSS
---S--------SSSSSSSSSSSSSSS----S---S----------------------SS-------S--SSSSSS---S
------------------------SS---------------S-------S-S------SS-SSS-SSS-SSSSS-SSSSS
SS--SSSSSSSSS-SS-SSSSSSS-SS-S--SSSSS-SSSSSS-SSSSSSSSSSS-S-SSS-S--SSS--SS-SSSS-SS
SSSSSSSSSS-SSSSS-S-SS--SSSSS--S-S-S--SSS-SSS----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----S-SS---SS--SSSSS--S---S--S-S-S----S-SSSSSSSS--SS-SSSS-SSSS-SSS-SS-S-S-SSSSS-
--SSSS-SSSSSSS--SS-SS--SSSSS-SSSSS-S-SSSS-S-SS-S-SSSSSS-SSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S----------------SS-----SS---------------S----------------
--------------------S-------S--------------------S------------------------------
-------------------------------------------------------SSSS---SSSS--------------
-----------------------SS--------------SS-------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------SSSSS----------------------------------------------SSSSSS-------S-S---S-
------------------------------------------------------------------------S-------
-------------------------------------S-----------------------S----SSSS----------
------------------------------------------------------------------------S-------
---S-S--------------------------------------------------------------------------
------------------------------------------------S---S--------------S------------
-----------------S--------------------------------------------------------------
------------------------------------------------------S-------------------------
----S--------------S---------------------------------------S--------------------
S-------------------------------------------------------------S-----------------
--------------------------------------------------------------------SSSSSSSSSSS-
--------S---------------------------S--------S----------------S-------S---S-----
-S-----------------S------------------------------S--------S---S------S------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S----------S--------------S---------------S-----S-----S--------S----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S------------S-S--------------------S---S---S-S------
S--------------S------------------------------------------------S---------------
------S----------------------------------------------------------------S--------
-S---------------------------------------S-----S-----S-S------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------S------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------S-----------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------S------S-------S-------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S------S-
----------------------S-------------------------------S-------------------------
--------------------------------------------------------------------------------
-------------------------S--------------------------------------------------S---
----------S---------SSS-S---------------------------------------------S--S------
------------------S----------S-------------------------S------------------------
-----------------------------------------SS--------S----------------------------
--------------------------------------S---------SS------------S-----------------
---SS-------------------S--------------------S---S------------------------------
---S----------------------------------------------------------------------------
-----------------------------------------S--------S-----------------------------
---------------------------SSSSSSS----------------------------------------------
--------------------------------S-----------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----SSSS-S------------
---------------------------------------------S----------------------S-----------
---S--------------------------------------------------------SS------------------
------------------------------------S-----------S-------------------------------
------------SSSSS-SS-S----------------------------------------------------------
--------------------------------------------------------------------------------
---S---S-----------------------------------------SS---------------S---S-S-S-----
----------------SSS----------------------------S-S------------------S-----------
--------S---S--------S-----------S-S-----S--S---------S-S-------S----------S----
---------------------------------S---S------------S----S------------------------
------------------S------------------------------S------------S-----------------
---S-S------------S-----------------------------------S-------------------------
S-----S-------------------S-----S---SSSSSSSSS----------------S------------------
----------------------------------S-------S------------------
>forward_1010
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------------------------------ATGATCCACCAAAGCCCAGG------------------------------
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>reverse_2597
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------------------------------------GAACTGTGCCTGCCGTTTTC------------------------
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>forward_1105
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---------------------------------------------ACGCCACGTATACGACCCTA---------------
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>reverse_3296
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---------------TGTTAGGCATGTCACTGAGCA--------------------------------------------
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>forward_1106
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----------------------------------------------CGCCACGTATACGACCCTAA--------------
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>reverse_3367
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------CCTCCTTGCATAGAACAACGG-----------------------------------------------------
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>forward_2133
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----------------------------------TAGCTAGGCTAACCCGGGG---------------------------
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>reverse_3893
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----------------------------------------------------TGTGTACATCCGTTCTGCAAC-------
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>forward_3496
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------------------------------------GTGCACCTTCCGGTTTTGTT------------------------
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>reverse_5337
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--------------------------------------------------------CGAAACCTGACAACAACTCGC---
--------------------------------------------------------------------------------
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-------------------------------------------------------------
