>input_sequence_22343
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--------ATGAGCTTCTCCACAAGTTTCGGGTGTGCCGGTGCACACCCCGCTCGCCATCTGGATCCGCCGCCGGCTGGG
AAGACATTTCGTGGTGTCAGCGCGACGCAGTTCCTGAGGAAGAGGCGGTTTTCCGGTTGCCCTGGCCGATTCGAATGCTC
CGCAAACTCGCGCCAATCTGGGCCGCGGCGCACCCCCAAGGACACCATGTACGACCTCCACCCCGAGATCTCGATGCTCT
ATGGAGAGGATAATGGTGCAGTTGCTGCCCCCAGCAAGGAGCAGGGTATCGGGAAAGCCATTGAAACCTTACCGCTAGCA
GACGCTTCTATCGCCTACCGCTACAACGAGCCCCGGATTAAAGTCATTGGGGTTGGAGGCGCCGGCTCCAACGCCGTGAA
CAGGATGATTGAGAGCTCCATGAAGGGGGTGGAATTCTGGATCGTGAACACTGATTTCCAGGCTATGAGGATGTCACCCA
TTGACCCGGCAAATAGGCTGCCGATTGGCCAGGAACTGACAAGAGGTCTTGGTGCTGGTGGGAACCCAGAAATCGGCATG
AATGCAGCCAAGGAAAGCCAGGAGTTGGTAGAAAAGGCAGTGTCTGGAGCTGATATGGTTTTTGTCACGGTATGTCCAGC
TGCTTGTGCAAATCATGCTTTTGCTGTTGCTTAATTGATGTAGAATTTGTGAACTGCAACACCTTGCTTGTCATCTAATA
TAGAGATTTTAGAACACATCAGGAATTGATCTTACTTGAGAGTAACGATATCCTAGATAGACATGTTAAGTTGGAGTACT
TATTAATTTACCCAAATATAATCATTTCTGTGCTTTGACTGCAAGGAATTTGATAATTGATATGCTCTATTGGTCGCCTT
T-------------------------------------------------------------------------------
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-------------------------------------------------GAACCTTCAAATCCATTTTACAGGCTGGAAT
GGGAGGTGGAACAGGCACTGGTGGAGCGCCTGTTATAGCAGGGATCGCAAAGTCTATGGGTATATTAACTGTCGGAATCG
TGACGACTCCGTTTTCATTTGAGGGAAGAAGGCGGGCACTCCAGGCACAAGAAGGAATTGCGGCCTTGAGAAGCAATGTT
GATACACTGATCGTAATCCCAAATGATAAGTTGCTGACTGCTGTTTCTCCAAATACTCCTGTGACAGAAGCCTTTAATTT
GGCAGATGATATTCTCCGGCAAGGTGTCCGTGGAATCTCAGATATCATCACTGTAAGATAAT--------ATG-------
-CTATGCCCCATGTTAGCTATTTTACATTTGTCAAATATGATTTCAAAGAGGTGGCATGTGA-TGTCTTAAGTGAACCAA
GTTTGGTTTATAGTTTACACACTCATGTGCTTATGGATTAACAATCTCCTTTGACCATTTCCTTGTTCAG-CATTTTTTT
TATGTACCAAAATCATCACCTTCACACTATGCACCGGGTTTAAATTATTA----------CTGATTCCTAGTTCTTTCTT
GACCCAACATTATATACACTTCTTTGGAATATCCAAACTACATCATCGTATCTTAATTTTTACCATTATGTATACCCAGT
TAGCTGGAACAGGATAAAAGTAGAATCCCATTGTTGAA----TACTGCACTTTGTTTCTCCATTGTTTCTAGCTATT---
-----------------------------------------------------------ATCTTTACACAACATTCACTG
CCTGTCTGCTTGTTATGCCATTTG-----------CACGAGTCTGAAAGTTCATATATCTTTAGCCCATGTTTTTGTCAA
CATATTTACTCTGACTAGAGTTGCCTGATATATGCAGCTAAACATGTGATTTGCTGCTACCTTTTTTTGCTTGCAGGTGC
CAGGTTTGGTCAATGTTGACTTTGCTGATGTACGATCAGTTATGTCAGATGCAGGTTCATCCTTGATGGGAATTGGAACA
GCAACAGGTTAAATTTCAGGGGACCTTATTTGTTCAACATCAAATGCTGCATGCACATGTATACTGCCTTGCATTCAT--
-ATAGAGTTAATGCTTGTTGTGAAACTCCTGAGGATATTGTGC-------------------------------------
--------------------------------------------------------------------------------
---TAATAACATAAATGGAATGTAGTTAATTACTTGATTTTCTCCGTCGA------------------------------
--------------------------------------------------------------------------------
--AAGTCATGTAACTAACCACAAGTTTCACTATTACTTGTGCAGCAG--------TATATATATATTTGTCAGTTCTG--
TGTGGCTTTATGCAGTTATATTGACTCCTAATCATGCTTAGATTGCATTTCTGGACATCATAGCATGCCAACAGCCACAC
CAACAACTGCTTACCCTCTCT-CTTTTGTCCTGCTGTTTCTGTTGGCCTATCTGCAGGTAAGACACGAGCAAGAGATGCT
GCACTCAATGCCATACAGTCTCCTCTACTTGATATTGGTATTGAAAGGGCAACAGGAATTGTGTGGAATATCACCGGAGG
GAGTGACCTAACATTGACAGAGGTATCATACGCACAATCTCTGTTAGACAGAACGGCTTGTTGAAGTTATATGCTTAATA
GTTTATATGACCTACTCCCTCCGTCCAGAAATACTCGTCGGAGGAATGGATGCATCTAGATGTATTTTAGTTCTAGATAC
ATTCATTTTTAGACATTTCTCCGACAAGTATTTCCGGACGGAGGGAGTACATAACAAGCTAAGCAAATCTATTTGTTTTT
ATA-------------AGCTAAGTTAATTTAGAAGGCCTCATTTCTAAATCAGGCCTGATTCCTTTGTAACTTGGAGCTT
GCACTGAGCCTGCTGCTAACATGGAAGAGCGTCACTAAATTTTTGAATTACTTTTGGCCTGAACCCATCATATATTTGGT
CATCCTCTTTATAGGTGAATGCAGCAGCTGAAGTGATATATGATCTCGTCGATCCTGGTGCAAATCTAATATTTGGGTCT
GTCATAGACCCATCATATACTGGTCAGGTAAGTAATCAGCGCCCGTCACAAGAGTCTTCTCGCCCAGCGAGAGATATGAA
AATTGCATTTACTTTTAATCAAGTAAACCATATTGTACAATTCAAAGACCGTTAAAACACACCCTGGTAAACAAACGCAT
GGCATCATC-CACAGGCTAATAACATGAAACCCCTTTCAGGTGAGCATAACTTTGATTGCAACTGGATTCAAGCGCCAGG
AGGAAAGTGAAGTCCGACCCGCGCAGGTACACCCTCTTGCATC----CCACCGACTACTTTCTGCTCACTTCCGCGCCCA
GTGTTCTAATGTAAATCCTGGATGCTCAGGCTGGAGGCGATGTTAACCGCGGCCGCAGCTCCAGGTTCTCTTCATCTTCC
CAGGACGAAGGCCCGAAGCTGCAGGTTCCCGAGTTCCTACAGCGGAAAGGGCGTCCAGGGTTTTCCAGAGGCTAA-----
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>chr1B_1_TraesCS1B01G285700
ACCACCAGAAGCACTCCGTGCTTTATTAGTAGGGAAAGATTGTGCTTGCTACCAACTACTCCTATACGAGTTGTTGGATT
TTTCCGAAGAGAAATGTTGATGTAGCACAATAATAGAAAACATTTGCCTTAGTTAAGAAACAAGGTTTTGGTTTAATCGA
ACCAATAGAGCCTTGCACAAAAATTAACCATACCCATGATAATCAATCACATATATGTATGTTTTTCTCAAAAGAAAAGA
TGCACAAAAAATATCTTTTTTGAACACAGTACAAGCGCAGACACTCACATACAGTCATCCTTATGAATGCACGCAGG---
-CACACACATCCATCCCTATGAGCATCTCCAGGATACAGTACTGAGTCGACACAATATTTTAAGATTGAAGAAGTCATCA
TAGGCGCCTCATAAGTCGATGAGAACATCTCTTCCCACCGAACGAACATCACAGAAAAGTCTG-AACACAAATTCAAAAA
GTGTGTACACCAGTGTCAAATCTAGAATTTAATCCCGGGTGG-----CATGGTTCCACCACAAGGAACTTATTCATTCAT
CTCAGCT---ACGAGCTATGCTCAGTTCGCACAAAAAACATCTCTTGACATCGATTCTTTTAAGATGTCTTTGAATCGGA
TTTGGTATGCTGTTAGGGCATCCATCTCCATGGACTCGGTAATCACGTGTTTCCTTG----G----ATTCGAAATCATCA
AATCTGCGCCCTCCATCCACCCAGCCAACGAATCCGAACCATCAAAATCTATCGCTTCCGC-GGCCACACTCTCCATTTT
-------TTTTGCTGAAGAAAAACAGCAAAGGGTTTTCCGCCCCCACCACCATCACCTTTGCTCCTCTGACCTACCCCAA
GCTGCCGGCCGACCCAAAGGCGGCCCGTGCCCTAGAGCCGCCGGCCTACCGCAGCACCGTCCA-----------------
--CCTCCATCGCCGTCCGCGCTCCACCTCACCGCGCCCCCGCCGTCCGTCTCCACCCCGTCCGCAATCTCGGACATCCGT
TTCGAGGTATGAGCTTCTCCACAAGTTTCGGGTGTGCCGGTGCACACCCCGCTCGCCATCTGGATCCGCCGCCGGCTGGG
AAGACATTTCGTGGTGTCAGCGCGACGCAGTTCCTGAGGAAGAGGCGGTTTTCCGGTTGCCCTGGCCGATTCGAATGCTC
CGCAAACTCGCGCCAATCTGGGCCGCGGCGCACCCCCAAGGACACCATGTACGACCTCCACCCCGAGATCTCGATGCTCT
ATGGAGAGGATAATGGTGCAGTTGCTGCCCCCAGCAAGGAGCAGGGTATCGGGAAAGCCATTGAAACCTTACCGCTAGCA
GACGCTTCTATCGCCTACCGCTACAACGAGCCCCGGATTAAAGTCATTGGGGTTGGAGGCGCCGGCTCCAACGCCGTGAA
CAGGATGATTGAGAGCTCCATGAAGGGGGTGGAATTCTGGATCGTGAACACTGATTTCCAGGCTATGAGGATGTCACCCA
TTGACCCGGCAAATAGGCTGCCGATTGGCCAGGAACTGACAAGAGGTCTTGGTGCTGGTGGGAACCCAGAAATCGGCATG
AATGCAGCCAAGGAAAGCCAGGAGTTGGTAGAAAAGGCAGTGTCTGGAGCTGATATGGTTTTTGTCACGGTATGTCCAGC
TGCTTGTGCAAATCATGCTTTTGCTGTTGCTTAATTGATGTAGAATTTGTGAACTGCAACACCTTGCTTGTCATCTAATA
TAGAGATTTTAGAACACATCAGGAATTGATCTTACTTGAGAGTAACGATATCCTAGATAGACATGTTAAGTTGGAGTACT
TATTAATTTACCCAAATATAATCATTTCTGTGCTTTGACTGCAAGGAATTTGATAATTGATATGCTCTATTGGTCGCCTT
T-------------------------------------------------------------------------------
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-------------------------------------------------GAACCTTCAAATCCATTTTACAGGCTGGAAT
GGGAGGTGGAACAGGCACTGGTGGAGCGCCTGTTATAGCAGGGATCGCAAAGTCTATGGGTATATTAACTGTCGGAATCG
TGACGACTCCGTTTTCATTTGAGGGAAGAAGGCGGGCACTCCAGGCACAAGAAGGAATTGCGGCCTTGAGAAGCAATGTT
GATACACTGATCGTAATCCCAAATGATAAGTTGCTGACTGCTGTTTCTCCAAATACTCCTGTGACAGAAGCCTTTAATTT
GGCAGATGATATTCTCCGGCAAGGTGTCCGTGGAATCTCAGATATCATCACTGTAAGATAAT--------ATG-------
-CTATGCCCCATGTTAGCTATTTTACATTTGTCAAATATGATTTCAAAGAGGTGGCATGTGA-TGTCTTAAGTGAACCAA
GTTTGGTTTATAGTTTACACACTCATGTGCTTATGGATTAACAATCTCCTTTGACCATTTCCTTGTTCAG-CATTTTTTT
TATGTACCAAAATCATCACCTTCACACTATGCACCGGGTTTAAATTATTA----------CTGATTCCTAGTTCTTTCTT
GACCCAACATTATATACACTTCTTTGGAATATCCAAACTACATCATCGTATCTTAATTTTTACCATTATGTATACCCAGT
TAGCTGGAACAGGATAAAAGTAGAATCCCATTGTTGAA----TACTGCACTTTGTTTCTCCATTGTTTCTAGCTATT---
-----------------------------------------------------------ATCTTTACACAACATTCACTG
CCTGTCTGCTTGTTATGCCATTTG-----------CACGAGTCTGAAAGTTCATATATCTTTAGCCCATGTTTTTGTCAA
CATATTTACTCTGACTAGAGTTGCCTGATATATGCAGCTAAACATGTGATTTGCTGCTACCTTTTTTTGCTTGCAGGTGC
CAGGTTTGGTCAATGTTGACTTTGCTGATGTACGATCAGTTATGTCAGATGCAGGTTCATCCTTGATGGGAATTGGAACA
GCAACAGGTTAAATTTCAGGGGACCTTATTTGTTCAACATCAAATGCTGCATGCACATGTATACTGCCTTGCATTCAT--
-ATAGAGTTAATGCTTGTTGTGAAACTCCTGAGGATATTGTGC-------------------------------------
--------------------------------------------------------------------------------
---TAATAACATAAATGGAATGTAGTTAATTACTTGATTTTCTCCGTCGA------------------------------
--------------------------------------------------------------------------------
--AAGTCATGTAACTAACCACAAGTTTCACTATTACTTGTGCAGCAG--------TATATATATATTTGTCAGTTCTG--
TGTGGCTTTATGCAGTTATATTGACTCCTAATCATGCTTAGATTGCATTTCTGGACATCATAGCATGCCAACAGCCACAC
CAACAACTGCTTACCCTCTCT-CTTTTGTCCTGCTGTTTCTGTTGGCCTATCTGCAGGTAAGACACGAGCAAGAGATGCT
GCACTCAATGCCATACAGTCTCCTCTACTTGATATTGGTATTGAAAGGGCAACAGGAATTGTGTGGAATATCACCGGAGG
GAGTGACCTAACATTGACAGAGGTATCATACGCACAATCTCTGTTAGACAGAACGGCTTGTTGAAGTTATATGCTTAATA
GTTTATATGACCTACTCCCTCCGTCCAGAAATACTCGTCGGAGGAATGGATGCATCTAGATGTATTTTAGTTCTAGATAC
ATTCATTTTTAGACATTTCTCCGACAAGTATTTCCGGACGGAGGGAGTACATAACAAGCTAAGCAAATCTATTTGTTTTT
ATA-------------AGCTAAGTTAATTTAGAAGGCCTCATTTCTAAATCAGGCCTGATTCCTTTGTAACTTGGAGCTT
GCACTGAGCCTGCTGCTAACATGGAAGAGCGTCACTAAATTTTTGAATTACTTTTGGCCTGAACCCATCATATATTTGGT
CATCCTCTTTATAGGTGAATGCAGCAGCTGAAGTGATATATGATCTCGTCGATCCTGGTGCAAATCTAATATTTGGGTCT
GTCATAGACCCATCATATACTGGTCAGGTAAGTAATCAGCGCCCGTCACAAGAGTCTTCTCGCCCAGCGAGAGATATGAA
AATTGCATTTACTTTTAATCAAGTAAACCATATTGTACAATTCAAAGACCGTTAAAACACACCCTGGTAAACAAACGCAT
GGCATCATC-CACAGGCTAATAACATGAAACCCCTTTCAGGTGAGCATAACTTTGATTGCAACTGGATTCAAGCGCCAGG
AGGAAAGTGAAGTCCGACCCGCGCAGGTACACCCTCTTGCATC----CCACCGACTACTTTCTGCTCACTTCCGCGCCCA
GTGTTCTAATGTAAATCCTGGATGCTCAGGCTGGAGGCGATGTTAACCGCGGCCGCAGCTCCAGGTTCTCTTCATCTTCC
CAGGACGAAGGCCCGAAGCTGCAGGTTCCCGAGTTCCTACAGCGGAAAGGGCGTCCAGGGTTTTCCAGAGGCTAAAGCAT
TT--------------------TTTCCAGTGTCATGAGCTTCTCAGTTCCTCTAGCAGTAGGCTCTTTGTTTTGTTTCGT
TGC--------------------AAGCTTTAGGCGATAGACTGTGTGTGTGATAGCATTAGACTGCATATGAAAACCTAT
CTTTGTCAGCGTGTAACCATCCATGGCGGTCTCTTCTAAGCCATCGCATGGCCCTGTTTGGAACTTCT-TTGTTCCTGCG
GGAAATAAGCTGATTCTTGTGACATTCTCGTGCTGGAAACGCGCCTGGATCGCTGGGTTACATCGAGCCTTGATCTCGTG
TTGTGTTCAAATAAGATCAGATGAAGAATTCAGGACAAGAGGTTGTTAGACGACGAGGTTTTGAACTACCGTATG---TA
GCATTATCTCGACATTTTCTCTTGCTTTGTCACGA-CCAAGTATGCCTGAATCGTGAATCACATGGATAGGGATGGTGGT
CGAGGCAGCTCAGGT------AGGCGCCTATTTTAAGCTGCAACTGACGCGCACGCAGCACGCGCAACTCATTGGCCTTT
GCAGGTCCCGAACGCGCAATTTTGCGCTGCCACGGGGGCTCATCCGCAAAGCAGCCACCCGTTAGACGGCGCACGAAAGA
GGAAAAGGGGAAGGGGGGAGCAGGAGGAACGCAACAGAAAACCAGTCCAGAGCCCGAAATCCACCAACCGGAGAAGAGAA
TCTCTCCCCT-----CGCGCTCCAGCGCCAGCGTGCCCGTCGTCGTCC--TCCCCCGCTCCCGCGGATTCGAATCCGCTC
GTCGCGGGCCGGCCGGATCCCGCTCGCTCCATGGCGGAGGGCTTCGGGCGCTGGGAGTCGGATCCACTCTTCCCCGCGGC
CGAGTGCGTGCAGGACTCCGCCGACAGGTTCGGCTCCTTCTCTCCGCCTCCTTTCGTGATCTGCTGCCCGCTGGTGG-AA
TTCCGCGCGTGGGAGCTTCGGTTGCTTGTCTCGCCGGATTCGCCGCCGCATTGTGGAGAATTCGGTGCGGGTTCTGAGCA
TGTGGCGCCAGTTC
>chr1A_39
--------------------------------------ATTGTGCTTGCTATCAGCTACTTCCGTAGGAGTTGTTAGTTT
TTTCCGAAGAGAAATGGTGATGTAGCACAACACCACAAAAAACATCCCTCAATTAAGAATCAATGTTT------AATCGA
ACCAGTAAAGCCTTGAACGGAAATTAACCACACCCATGATAATCAATCACATAACGTATG--TTTTCTCAAAAGAAATGA
TGCATGAAAAATATCTTTTTTGAACACAGTACAATTGGAGACACTCATATATACTAATCCTTATGAATGCACGCACGCAC
ACACGCACATCCACCCCTATGAGCACCTTCGAGATACTGAGA-----CGACACAACATTTTAAGATTGAAGAAGTCATCA
TAGGCTTCTCGTAGTCGAAAAAAAACCTTC--TCCCATCGAACAAACATTACAGGAAAGTCTG-AAAT-AAATCTAAAAA
ATGTGCATAACAGTGTCAAATCTAGTCTGGAATTTAAAGTCTGGTGACATGGTTCCACCACAAGGAACCTATTCATTCAT
CTCAGCTAGTACGAGCTATGCTCAGTTCGCATCAAAAACATCTCTTGACATCGATTCGTTTTAGATGTCTTTGAATCGGA
TTTGGTATGCTGTTAGGGCATCCATCCCCATGGACTCGGTAATCACGTTTTTCCTTG----GTTCCATCCGAAATCATCA
AATCTGCGCCCTCCGTTCACCCAGCCAACGAATCCGA-CCATCAAAACCTATCGCTTCCGCCGGCCACCCTCTCCATTTT
-------TTTCGCTG----AAAACAGCAGAGGGTTTTCCGCCCCCACCACCATCACCTTTGCTCCTCTGACCTACCCAAA
GCTGCCGGCCGACCCAAAGGCGGCACGTGCCCTAGAGCCGCCGGCCTACCACAGCACCGCCCCCTTACCCCCCGCGCCGC
CGCCTCCATCGCCGTCCGCGTTCCACCTCTCCGCGTCCCCG----CCGTCTCCACCCCGTCCGCAATCTCGGACATCCGT
TCCGAGGTATGAGCTTCTCCACAAGTTTCGGGTGTGCCGGTGCACACCCCGCACGCCATCTGGATCCGCCGCCGGCCGGG
AAGACATTTCGCGGTGTCAGCGCGACGCACTTCCTGAGGAAGAGGCGGTTCGCTGGTCGCCCTGGTCGATTCGAATGCTC
CGCAAACTCGCGCCAATCTGGGCCCCGGCGCACCCCCAAGGACACCATGTACGACCTCCACCCCGAGATCTCGATGCTTT
ATGGAGAGGATAATGGCGCAGTTGCTGCCCCCAGCAAGGAGCAGGGTATCGGAAAAGCAATTGAGACCTTACCGCTAGCA
GATGCTTCCATTGCGTACCGCTACAATGAGCCCCGGATTAAAGTCATAGGGGTTGGAGGCGCCGGCTCCAATGCCGTGAA
CAGGATGATTGAGAGCTCCATGAAGGGGGTGGAGTTCTGGATCGTGAACACTGATTTCCAGGCTATGAGGATGTCGCCCA
TTGACCCGGCAAATAGGCTGCCGATTGGCCAGGAACTGACAAGAGGTCTTGGTGCTGGTGGGAACCCAGAAATCGGAATG
AATGCAGCCAAGGAAAGCCAGGAGTTGGTAGAAAAGGCAGTGTCTGGAGCTGATATGGTTTTTGTCACGGTACGTCCAGC
TGCTCGTGCAAATCGTGCTTTTGCTGTTGCTTAATTGATGTAGAATTTGTGAATTGCAACACCTTGCTTGGCATCTAATA
TATAGATTTTAGAACATATCAGGAATTGATCTTATTTGAGAGTAACGATATCCTAGATAGACATGTTAAGTTGGAGTACT
TATTCATTTACCCAAATATAATCATTTATGTGCCTTGACTGAAAGGAATATGATAATTGATATGCTCTATTGGTCGCCTT
T-------------------------------------------------------------------------------
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-------------------------------------------------GAATCTTCAAATTCATTTTACAGGCTGGAAT
GGGAGGTGGAACAGGCACTGGCGGGGCGCCCGTTATAGCAGGGATCGCAAAGTCTATGGGTATATTAACTGTTGGAATCG
TGACGACCCCGTTTTCATTTGAGGGAAGAAGGCGGGCACTCCAGGCACAAGAAGGAATTGCGGCCTTGAGAAGCAATGTT
GATACACTGATTGTAATCCCAAATGATAAGTTACTGACTGCTGTTTCTCCAAATACTCCTGTGACAGAAGCCTTTAATTT
GGCAGATGATATTCTCCGGCAAGGTGTCCGTGGAATCTCAGATATCATCACTGTAAGATAAT--------ATGTTACTAT
GCTATGCCCCATGTTAGTTATTTTACATTTCACGAGTATGATTTCGAAGAAGTGGCATTTGCGTGTCTTAAGAAAATAAA
GTTTGGTTTACAATTTACACACTCATGTAATTATGGATTAACAATCTCCCTTGACCATTTCCTTGTTTCACCATTTTTTT
TATGTTCCAAAAGCATCACCTTCACACTATGCAGTGGGTATAATTATTATTAGTTTGTCTCTGGTTCCTAGTTCTATCCT
GATCTAACATTATATACATTTCTTTGGAATATCCAAACTACATCATTGTATCTTAATTTTGACCATTATCTATACCAAGT
TAGCTGCAACAGGATAAAAGTAGAATGCCATTGTTGACTGACTATTGCACTTCGTCCCTCCATTGTTTCTAGCCAGAGAC
AAAATTCATTGTCTGCTTGTTATGCCATTTGCAATGCCAATTCATGAGTCTGAAAGTTCATCTTTACATAACATTCACTG
CCTTTCTGCTTGTTATGCCATTTGCAATGCCAAGTCACTAGTCTGAAAGTTCATATATCTTTCACTTATGTTTTTGTCAA
CATACTCACTCTGACTAGAATTGTCTGATATATGCAGCTTAAGATGTGATTTGTTGCTACCTTCTTTTGCTCGCAGGTGC
CAGGTTTGGTCAATGTTGACTTTGCTGATGTACGATCAGTTATGTCAGATGCAGGTTCATCCTTGATGGGGATTGGAACA
GCAACAGGTTAAATTTCAGGGAACCCTATTTGTTCAACGTCAAATGCTGCATGCACATGTATAATGCCTTGCATTCATCA
TATAGAGTTAATGCTTGTTGTGAAACTCCTAAGGATATTGTGCTAATAAGTACTCCCTCCGTCCGGAAAAACTTGTCCCA
AGCTTGTTCATATGGATGTATCTAGCACTAACTTGGTGCTAGATACATTCATTTGAGGGACAAGCTTTTTCGGACGGAGG
GAGTAATAACATAAGTGGAATGTAGTTAATTACTTTATTTTCTTTTTACATATCTTCTTTTTACCTTTTCTTTGGGTCTA
GGCCTTGTAAATATTGTTCTGTATCCTATGAATAAAATGAAGAGCTGTGTGGTGCTTTACCCGCAGTACATGGTAAAAAA
AGAAGTCATGTGGCTAACCACAAGTTTCACTATTACTTTTACAGCAG--------TAAATATATTGCTGTCATTTTTA--
TGTGGCTTTATGCAGTTATATTGACTCCTAATTGTGCTTAGACTGCATTTCTGGACATCAGAGCATGCCCACAGCCACAC
CAACAACCGCTTACCCTTCCCCCTTTTCTCCTGCTGTTTCTGTTGGCCTATCTGCAGGTAAGACACGAGCAAGAGATGCT
GCACTCAATGCCATACAGTCTCCTCTACTTGATATTGGTATTGAAAGAGCAACAGGAATTGTGTGGAATATCACCGGAGG
GAGTGACCTAACATTGACAGAGGTATCATATACACAATCTCTGTTAGACAGAACGGCTTGTAAAAGTTATATGCATTCTA
GTTTATATCGTGACCA----------------------------------------------------------------
------------------------------------------------ACATAGCAAGCTAATCAAATCTATTTGTTTGT
AGTGGACAACTTTGGCAGCTAAGTTAGTTTAGAAGGCCTTATTCA------------------TTTGTAACTTTGAGCTT
GCACTGAGCCTGCTGCTAACATGGAAGAACGCCACTAAAATTTTGAATTACTTTTGGCCTGAACCCCAC-------TGGT
CATCCTCTTTGTAGGTGAATGCAGCAGCTGAAGTGATATATGATCTCGTAGATCCTGGCGCAAATCTAATATTTGGGTCT
GTCATAGACCCATCATATACTGGTCAGGTAAGTAATCAACGTCCTTCACAAGAGTCTTCTCGCCCAGAGAGAGATATAAA
AATTGCATTTACTTTTAATCAAGTAAACCATATTTTACAATTTAAAGACCGTTAAAACCCACCCTGGTAAACAAACGCAT
GGCATCATCGCACATGCTAATAACATGGAACCCCTTTCAGGTGAGCATAACCTTGATTGCAACTGGATTCAAGCGCCAGG
AGGAAAGTGAAGTCCGACCCGCGCAGGTACACCCTCTTGCG----TTCCACCGACTACTTTCTGCTCACTTCCGCGCCCA
GTGTTCTAATGTAAATCCTGGATGCTCAGGCTGGAGGCGACGTGAACCGCGGCCGCAGCTCCCGGTTCTCTTCATCCTCC
CAGGACGAAGGCCCGAAGCTGCAGATTCCTGAGTTCCTACAGCGGAAAGGGCGTTCGGGGTTTTCCAGAGGCTGAAGG-C
CCCCCAAGTAGTCTAGCTCATCTTTGCAGTGTCATAAGCTTCCCAGTTCTT---GCAGTAGACTCTTAGTTATGCCTTTC
TGCTTTGTTTCCTTCCGTTGCAAAAGCTTTAGGTGATAGACC----GTGTGATAGCATTAGAGTGCATATGAAATCGTAT
CTTTTCATAGTGTAAACCATTCATGGCGGTCTCTTCTCAGCCATCATATGGCCCTGTTTGGTGCTTTGCTCGTTCCTGCG
GGAAATAAGCCGATTCTTGTGAAATTCTCGTGTT-------CGCCCGGATGGCTGGGTTACATCGAGCCTTGATCTCGTG
TTGTGTTCAAATAAGATCAGATGAAGAATTCAGGACAAGAGGTTGGTAGACGACGATGTCTTGAACCACTGTATG---TA
GCATTGTCTCGACATTTTCTCTTGCTTTGTCACGGCCCAAGTGTGCCTGAATCGTGAATCACATGGAA------GGTGGT
CGAGGCAGCTCAGCCCAGGCCAGGTGCCTATTTTAAGCCGCAACTGACGCGCACGCAACACGCGCAACTCATTGGTCCTT
GCA-------AACGCGTAATTTTGCGCTGTCACGGGGGCTCATCCGCAAAGCGGCCACCCGTTAGACGGGGCACGAAAGA
GGCAAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr1D_39
--------------------------------------ATTGTGCTTGCTAGCAACTACTCCTGTACGAGTTGTTGGATT
TTCCCGAAGAGAAATGTTGATGTAGCACAACAATAGAAAACATTTCCCTTAGTTAAGAAACAAGGTTT------AATCGA
ACCAGTAGAGCCTTGCGCGAAAATTAACCACACCCATGATAATCAATCACATATACATATGTTTTTCTCAAAAGAAAAGA
TGCACGAAAAATATCTTTTTTATACACAATACAATCGCAGACACTAATATACACTCATCCTTATGAATGCACACAAG---
-CACGCACATCCACCCCTAGGAGCACCTCCGAGATACAGTAGTGAACCGACACATCATTTTAAGATTGAAGAAGTCATCA
TAGGCGTCTCGTAAGTCGACGAGAACATATCTTCCCTCCGGACGAACATCACAGGAAAGTGTGAAAAT-AAATTCAAAAA
GTATGTACACCAGTGTCAAATCTAGAATTTAAACCCTGA-----TGACAAGGTTCCACCACAAGGAACTTATTCATTCAT
CTCAGC---TACGAGCTATGCTCAGTTCGCATCAAAAACATCTCTTGACATCGATTCTTTTAAGATGTCTTTGAATCGGA
TTTGGTATGCTGTTAGGGCATCCATCTCCATGGACTCGGTAATCACGTGTTTCTTTGGATTG----ATTCGAAATCATCA
AATCCGCGCCCTCCGTCCACCCAGCCAACGAATCCGAACCATCAAAATCTTCCG-------CGGCCACCCTCTCCATTTT
ATTTTATTTTAGCTG----AAAACAGCAAAGGGTTTTCCGCCCCCACCACCATCACCTTTGCTCCTCTGACCTACCCCAA
GCTGCCGGCCGACCCAAAGGCGGCCCGTGCCCTAGAGCCGCCGGCCGACCGCCGCACCGTCCGCCTATCCCCCGC---GC
CGCCTCCATCGCCGTCCGCGCTCCACCTCCCCGCGTCCCCG----CCGTCTCCACCCCGTCCGCAATCTCGGTCATCGGT
TCTGAGGTATGAGCTTCTCCACAAGTTTCGGGTGTGCCGGTGCGCACCCGGCACGCCATCTGGATCCGCCGCCGGCCGGG
AAGACATTTCGTGGTGTCAGCGCGACGCGTTTCCTGAGGAACAGGCGGTTTGCCGGTTGCCCTGGTCGATTCGAATGCTC
CGCAAACTCGCGCCAATCTGGGCCGCGGCGCACCCCCAAGGACACCATGTACGACCTCCACCCTGAGATCTCGATGCTCT
ATGGAGAGGATAATGGCGCAATTGCTGCCCCCAGCAAGGAGCAGGGTATCGGGAAAGCAATTGAGACCTTACCGCTAGCA
GATGCTTCTATCGCGTACCGCTACAATGAGCCCCGGATTAAAGTCATTGGGGTTGGAGGCGCCGGCTCCAACGCCGTGAA
CAGGATGATTGAGAGCTCCATGAAGGGGGTGGAGTTCTGGATCGTGAACACTGACTTCCAGGCTATGAGGATGTCGCCCA
TTGACCCGGCAAATAGGCTGCCGATTGGCCAGGAACTGACAAGAGGTCTTGGTGCTGGTGGGAACCCAGAAATCGGCATG
AATGCAGCCAAGGAAAGCCAGGAGTTGGTAGAAAAGGCAGTGTCTGGAGCTGATATGGTTTTTGTCACGGTACGTCCAGC
TGCTTGTGCAAGTTGCGCTTTTGCTGTTGCTTAATTGACGTAGAATTTGTGAATTGCAACATCTTGCTTGGCATCTAATA
TAGAGATTTTAGAACACATCAGGAATTGATCTTATTTGAGAGTAACGATATCCTAGATATACATGTTAAGTTTGAGTACT
TATTAGTTTACCCAAATATAATCATTTCTGTGCTTTGACTGAAAGGAATATGTAAAAAAAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCTTCAAATTCATTTTACAGGCTGGAAT
GGGAGGTGGAACAGGCACTGGCGGGGCGCCTGTTATAGCAGGGATCGCAAAGTCTATGGGTATATTAACTGTCGGAATCG
TGACTACTCCGTTTTCATTTGAGGGAAGAAGACGGGCACTCCAGGCACAAGAAGGAATTGCGGCCTTGAGGAGCAATGTT
GATACACTGATCGTAATCCCAAATGATAAGTTACTGACTGCTGTTTCTCCAAATACTCCTGTGACAGAAGCCTTTAATTT
GGCAGATGATATTCTCCGGCAGGGTGTCCGTGGAATCTCAGATATCATCACTGTAAGATAATATGCTGCTATG-------
-CTATACCTCGTGTTAGCTATTTTACATTTGCCAAGTATGATTTGAAAGAAGTGGCATGCGA-TGTCTTAAGAAAACCAA
GTTTGGTTTACAGTTTACACACTCATGCAACTATGGATCAACAATCTCCTCTGACCATTTCCCTGTTTAG-CA-TTTTTT
TGTGTTCCAAAATTATCACCTTCAGACTATGCAGCGGGTTTAAATTATTA----------TTGATTCCTAGTTCATTCCT
GATCCAACATTATATACACTTCTTTGGAATATCCAAACTACGTCATTGTATCTTAATTTTTACCATTATGTATACCCAGT
TAGCTGGAACAGGATAAAAGTAGAATCCCATTGCC----GACTATTGAACTTCGTTCCTCCATTGTTTCTAGCTATT---
-----------------------------------------------------------ATCTTTACACAACATTCACTG
CCTGTCTGCTTGTTATGCCATTTG-----------CACGAGTCTGAAAGTTCATATATCTTTAGCCCATGTTTTTGTTAA
CATATTTACTCTGACTAGAGTTGCCTGATATATGCAGCTAAACATGTGATTTGGTGCTACCTTTTTTTGCTTGCAGGTGC
CAGGTTTGGTTAATGTTGACTTTGCTGATGTACGATCAGTTATGTCAGATGCAGGTTCATCCTTGATGGGAATTGGAACA
GCAACAGGTTAAATTTCAGGGAACTTTATTTGTTCAACATCAAATGCTACATGCACATGTATACTGCCTCGCAT---TCA
TATAGAGTTAATGCTTGTTGTGAAACTTCTAAGGATATTGTGC-------------------------------------
--------------------------------------------------------------------------------
---TAATAACATAAATGGAATGTAGTTAATTACTTGATTTTCTCCGTTGA------------------------------
--------------------------------------------------------------------------------
--AAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATTTGTCAGTTTTGTG
TGTGGCTTTATGCAGTTATATTGACTCCTAATCATGCTTAGATTGCATTTCTGGACATCATAGCATGCCAACAGCCACAC
CAACAACCGCTTACCCTCTCT-CTTTTGTCCTGCTGTTTCTGTTGGCCTATCTGCAGGTAAGACACGAGCAAGAGATGCT
GCACTCAATGCCATACAGTCTCCTCTACTTGATATTGGTATTGAAAGGGCAACAGGAATTGTGTGGAATATCACCGGAGG
GAGTGACCTAACATTGACAGAGGTAGCATACGCACAATCTCTGTTAGACAGAACGGCTTGTTGAAGTTATATGCTTAATA
GTTTATATTGTGACCA----------------------------------------------------------------
------------------------------------------------ACATAACAAGCTAAGCAAATCTATTTGTTTTT
ATA-------------AGCTAAGTTAATTTAGAAGGCCTCATTTCTAAATCAGGCCTCATTCCCTTGTAACTTTGAGCTT
GCACTGAGCCTGCTGCTAACATGGAAGAGCGTCACTAAATTTTTGAATTACTTTTGGCCTGAACCCATCATATATTTGGT
CATCCTCTTTGTAGGTGAATGCAGCAGCTGAAGTGATATATGATCTCGTCGATCCTGGTGCAAATCTAATATTTGGGTCT
GTCATAGACCCATCATATACTGGTCAGGTAAGTAATCAACGCCCGTCACAAGAGTCTTCTCGCCCAGCGAGAGATATAAA
AATTGCATTTACTTTTAGTCAAGTAAACCATATTTTACAATTCAAAGACAATTAAAACACACCCCGGTAAACAAACGCAC
GGCATCATCCCACATGCTAATAACATGGAACCCCTTTCAGGTGAGCATAACCTTGATTGCAACTGGATTCAAGCGCCAGG
AGGAAAGTGAAGTCCGACCCGCGCAGGTACACCCTCTTGCGTTCCTTCCACCGACTACTTTCTGCTCACTTCCGCGCCCA
GTGTTCTAATGTAAATCCTGGATGCTCAGGCTGGAGGCGACGGCAACCGCGGCCGCAGCTCCCGGTTCTCTTCATCCTCC
CAGGACGAAGGCCCGAAGCTGCAGATTCCCGAGTTCCTACAGCGGAAAGGGCATTCGGGGTTTTCCAGAGGCTGAAGACC
CCCCCAAGTAGTCTAGCTCATCTTTCCAGTGTCACG--------AGTTCTT---GCAGTAGACTCTTAGTTATGCCTTTC
TTCTTTGTTTCCTTTCATTGCAAAAGCTTTAGGTGATAGACCGTGTGTGTGATAGCATTAGAGTGCATATGAAATCGTAT
CTTTTCAGCGTGTAGACCATTCATGGCGGTCTCTTCTCAGCCATCCGATGGCCCCGTTTGGAGCTTTGCTTGTTCCTGTG
GAAAATAAGTCGATTCTTGTGAAATTCTCGTGTTCGAAACGCGCCCGGATGGCTGGGTTACATCGAGCCTCGATCTCCTG
TTGTGTTCAAATAAGATCAGATGAAGAATTCAGGACGAGAGGTTGGTAGACGATGAGGTTTTGAACCATTGTATGTACTA
GCATTCTCTCGACATTTTCTCTTGCTTT----------------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_4654
--------------------------------------------------------------------------------
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-------------------------------------------TGCCTGAAT-GTGAATCACATTGAA------GGTGGC
CGAGGCTGCTCAGCCCAGGTCAGGTGCCTATTTTAAGCTGGAACTGACGCGCACGCAGCACGCGCAACTCATTGGCCTTT
GCAGGTCCCGAACGCGCAATTTTGCGCTGCCACGGGGGCTCATCCGCAAAGCAGCCACCCGTTAGACGGCGCACGAAAGA
GGAAAAGGGAAGGGGGCAAGCAGGAGGAACGCAACAGAAAACCAGTCCAGAACCAGAAATCCACCAACCGGAGAAGAGAA
TCTCTCACCTCCCTCCGCGCTCCAGCGCCCGCGTGCCCGTCGTCGTCCCCTCCCCCGCTCCCGCGGATTCGAATCCGCTC
GTCGCGGGCCGGCCGGATCCCGCTCGCTCCATGGCGGAGGGCTTCGGGCGCTGGGAGTCGGATCCGCTCTTCCCCGCGGC
CGAGTGCGTGCAGGACTCCGCCGACAGGTTCGGCTCCTTCCCTCCGTCTCCTTTCGTGATCTGCTGCCCGCTGGTAGAAA
TTCCGCGCGTAGGAGCTTCGGTTGCTTGTCTCGCGGGATTCGCCGCCGCATTGTGGGGAATTCGGTGCGGGTTCTGAGCA
TGTGGTGCGAGTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----------S----------------
------------------------------S--------------S----------------------SSSSSS------
----S-------------S-----------S------------------------SS-----------------------
-----S----------------------------S------------S-----S---------------------S----
----S--------S-----------S----SS---------S---SS--------S------------------------
------S---S--------S--------S-------------------------S-----------SSS-----------
------------------------------------S---SS--------------------------------------
-------------------------------SS-----------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------S-----------
----------S----SSSS-------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------S-----S-----SSSS-----------------------------------
-S--------------------------------------------------S-----------------------S---
-----------------------------S---------------------S-------------S--------------
--------------------------------------------------------------------------------
----------------S-----------------------------------------S-----S---------------
--S-----------S-----------S-----------------------------------------------------
---------------------------------S-----------------------------------------S----
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------S--------------------------------------S----------------S---------
----------------------------------S---------------------------------------------
-----------------------------------------S-------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
---------------------S--S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---S--------------S---------------------SS------
----------S-----------------SS-------------------------------------S------------
-----S---------------------------S--------------------------------------------S-
--S-------------------------------------------S---------------------------------
-------------------------------------S------S-------S---S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------SS-------------------------S-S----------------------------------S----
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
---------------------------------------------------------S---------------S------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------S--------------------------------------S--
----------------------------------S---------------------------------------------
--------------S------------S-----------------------S----------------------------
----------------------------------------S-S-------------------------------------
----------------------------------------S--S------------------S-------------S---
------------------------S-----------------------------S-S----------------S---SSS
SS----------------------------------------S------S-SSS-------S-----S---S--SS-SSS
---------------------------------S-------S--------------------S-----------S-S---
----SSSSSSSSSS------S----------------S-------SS---------------S---SS------------
----------S-----------S---------S-S----------S----S-----------------------------
---------------------------------------------S--------------------S--S----------
-----S----------------------------S-------S------------------------SSSSSSS------
-------------SS---------S-------------------------------------------------------
--------------------------------------------------------------------------------
---------S-S----SS---------------------------------S--S-------------------------
------S----------------------S--------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------S-----S----------------------------S----
----------S-----------------------S---------------------S-----------------------
-----S--S-----
>forward_593
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-------------AGCTATGCTCAGTTCGCACA-----------------------------------------------
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>reverse_2582
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---------------------TGGAGCGCCTGTTATAGCAG---------------------------------------
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>forward_1172
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--------------------------------CCTGAGGAAGAGGCGGTTTT----------------------------
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>reverse_2753
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--------------------------------GCTGACTGCTGTTTCTCCAA----------------------------
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>forward_1339
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----------------------------------------GCAGGGTATCGGGAAAGCC---------------------
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>reverse_4168
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-------TGCTTACCCTCTCTCTTTTGTCC--------------------------------------------------
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>forward_1387
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------TCTATCGCCTACCGCTACAAC-----------------------------------------------------
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>reverse_4411
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----------CCTACTCCCTCCGTCCAGAA--------------------------------------------------
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>forward_4168
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--------------------------------------------------------------------CAACAGCCACAC
CAACAACT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5975
--------------------------------------------------------------------------------
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------------------------------------------------------CGAAATCCACCAACCGGAGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
