>input_sequence_22073
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---------------------------------------------------------------------GTTCGAACCGT
TGAACGAAATTAAACGGGAGAGAGAT--------AGATCGTACTAGCTCCCAGCCTCACGACGACTCTGCTCTGCTCTGC
CATTTGAAAAGAAAGGAGGTGAGGCGCTG-----TTTTTCTGCGCTGGGCGGGCGGCGGGCGACTTTGATGTGCTACGAG
CTGGCGGACCAACGTGGACTGCACGGCA---GCGGCGGCCGGACGGTGAAGGGCGAG---GGCAGCTCCGGGGCGCCGTC
GGGAATGACGACAATGGCGAGCCCGGCGGACTTCATGTCGGGCTACTACCAGGCGCAGGAGATGTCGACGATGGTGTCGG
CGCTGTCGCGGGTCGTGGCGGAGGACGACCCGTGGGCGCCGTCCGGCTCCGGCGCCGGGGCGGAGGGGTGGGGCTGGGAG
GAGCAGCAGGCAATGCACGCCGC------------CGGAGGAGGCGGCTACGTGCACGAGCTGGGGAGCTTCCCCGGCGC
GCCATCTTCAGAGTTCGCAGGTAACAAACAGTCAACACACGCATGCTATTGAAGCTTAGCTTGGTCGGGAAGAGTTTCTG
AGTTTGCATGCTCTGCTTTTGCCTTGGATTTGATATTGCTCCACCGAGCTTC---GCACGCTCTACTTTTTTGCCCGATC
ACATTTTTGCATGCTACTCCAGCTCGAAACGTGTCAGGCATGGGCAAAATCACCTTTCCAGAGTATACATCTTATGCATT
CAGAGGTTTTTTTTTTATCGGATGCATTCAGAGTTTCTTTTTT-ATCTGATGCATTCAGCGGTTTATTACTAGTATCCTA
ATAAGCTTGTAAAATAAAGGAAATGTCTATATCCGTCGGTGAAGCAAACGAAGTGGCTCACCCCCTAACGAAGAACTCAT
TTAGTGAAAAAATTTGTATGTTTTGGGAATCTATAATCCCTGATTTTATTTCTCACTATATTGTACTCCCTCTGTTCTAT
AATAGTATCAAACACGTTTTTGTATTATAGGATAAGGGAGTAAATGATATGTCTGTTATCAAAGGAATAAAATCTGTTGC
TTTCAAAAACACACGCTATAGCAACTTTGTTCTACCTCTAGTACAAAGTTATACTAAGCTTGAGACAGTTATTTTGAGAC
GGAGGGAGTAATATTTTACAAGAATATTTTAGAGGTAAAAAAACTAATATTGGCACCCCGGGTGTACATCATTCGGCTT-
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-----------ATAACTTAACTTAAACAAGAAGACAATCGATGAAGTTCGAACCTTTACGTTTCTAGCTCTGATCAGGTC
ATAAAGAATCGGTGAACACGTGTAGTGCCAGTTTTGGTCAGTGCAGAGCCCTAGGCACAAAATGTGTTATATGAAGAGAG
TTATTTCTTGGAAATAATAGAGGAAAATGCGTGCGGAACATGCAAGCGCGCGCGACCATAACAAACTGGTCGTACGGAGG
AACGGCGTGTAGCTCAAAGTCGAAACGTCGGACGGAACCGAGGCGCCTGGATTCCTCG--------TAGCTGACATAAGG
AAAATGAAACGAACCCTATCTCTTGTAATCCACTGCTGCACAGTTGTACGCCATTGAACCTAGTCTTG---TAATCCACT
GCACCTCTGCAACGCAACAAAGACA-----------CAGCTAAGTCTTCAGGTAGTACGTAGCATTTCATCGTACATATG
TATAAAATACAGTGCATCTTCGTGTCATGTACGTAGGAGTACATGCCAATATGTCATGGATGAGCTTGCGTGACGCGCAT
ACAACA-----ACGAGAATACGGTCGAGAGAGTTCATTTCTTTCCTGAAAAGGCAGTTTTTTTCCTTCATTTTTTCCTCC
TTTTG----CAACGAAAAGCGGTTCGAATTCTTGAGGTGGTGCTTATCGCTTTGCTGGAAGCATGAATATCTTTTCT---
---CTACTGCTTTCCAGTTCACATTCCTAAATTTAACCCCTCGGTGATCGGGACGGACGCGCTTTATTAACACCTTGCAA
ATCGCGTTCGGGTGCATGCACATACA----CACACTGCATGCGCGAGTGCACAACTTGGAACACGCTTGCGCTGCCTCGC
TTTGCATTCTCTCTGCTTTT------GCTT-GGCGCCTCGTCCCCGTGACACC------------------GTATAAATA
TGCTTCCGCGTCCGTGCGCAGGGTCGGATCAGAGCTCGGACACCCAGAGCGCGAGCGCGAGCGCGGCGACCATGGAGGAA
CACCGCTCCCGCTCCCCGGCGTCGTCCAACGTGGAGGCGGCGGAGGCGCCGCGCCGGCGGTACCGAGGGGTGCGGCAGCG
GCCCTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCGCACAAGGCGGCGCGCGTCTGGCTCGGCACCTTCGAGACGGCCG
AGGCCGCGGCGCGCGCCTACGACGACGCCGCGCTGCGCTTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGGACGCG
CGCCTGCACCCGGCCACCGTCGCCCCCGCCGCCGCGCCGGCCCGTGTGCCGATCGCCGCGGCGTCGGCCTCGACGCCCGG
CATGTACGCCGGCGCCGGGCCGGCCTCCGACTACCTGCGCTACCAGATGCTCCTGCAGGGCAGAGG---CGCCGCCGCCA
ACCAAGGCAACCTTCTCTCGTTCTACGGC------GGGGGCGGCGGCGGCGGCGGCATGTCCAGCTCGTACGGCGGCGG-
--C---------ATGAGCAGCTCATATGGCGGCGG------CGGCGG---------CACCATGAGCGGTTTCCTGGGCTC
CTACTACTCGTTCCCGACCTCCTCCGTCTCGGTGGCCACCGTCCCGTCATCCTCCTCCGCGTCCTCTGCTCCGGGCCACT
ACTACTCGTCGCCGCACGACTCGCAGCAGCACCAGCAGCAGCAGGGCAACGCGGCGGCGGAGTGGAGCTGGGAGAGCGCG
CTGGCGCCCTACCCGGGGACGACGACGGCGGCCTCCTGGTCCGACTCGAGCCAGCAGCCGTACCACCCGCCGCACACCCA
ATAGCGCAGCCG---------CAAAGCCAAGGCCAAGATTCTGCGCCGTCTCTGGAAGAAAGAATAAGTTGTGTACGGAA
GGCGACGGAGACGGGCGCAGCAGCAACCAG-------------------CAAGCAGAGGAAGGTTGAGAATGATGGCGTC
ACTCACCGA------------GGGGCATGTGTTGATTGACAGCTATGGGC-GTGCTCATTTTGTTCGTTCGTTGATTATT
AGTTTGGGAGGTGGTGCGGGT-CGCCCCGTTTTTAGTACTTTCTGCTTTGGTTATTA---CTGCAAATTA-----AAAAA
AATGGAAGAGCGAGCTTGATGCTTGCAGATGGG------GATTGGATACTTTTGGGGAGGTTTAATCAGAGTCATTTGG-
----------------------GAAAAATAATGAATGTTACG---------------TGCTACC----------------
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-----------------------------------
>chr3B_1_TraesCS3B01G412500
ATTTTGCGAAGTAGTCAAGGAGCGAGAGCAACACGAGCAACATGATCCCTCTAAACATTGACTGACCGGCCTGTTATCCA
TCCAACCTCCTCTGAGCATATCCCGTTATCCCTATGCTGAAGCAGTCCGGTCACTCGTCAGTGGCAACTCAACGAAACAA
TCCACCACCGTCGCGCGCGGCGGCAACCTGAAGAAAGTTATACCACTACTACTAGACTGTCTAGACAGTTCGTTGGAAGG
AAAACTACCCAAGGAAATGATCAAAACCGTGACGGGAAAAAAGGAGAAGAAGAAGAAAGGAAGCGAAATCAGATAAGCAC
GCTCCACATAACGGACTGCTCCTCCTCACCGCTGACCGCGTCAACCGGCCGTCCAGGGTGCGTGAACCACGAACGCGCTC
CT-CCTCCCTCATGTCGGCGAAAGCGATCGGTACCGGAGCAAGTAGTGGAGCAGTAAGTAAATCGGACCCTGGTTCTCAA
AAAAAGTAAATCGGACCCCAAGCCTCAGATAATACAACACGAGGCTGTGTATTCGAGCGACATCGAATG-------CTGA
TCCAATGGTGCCGACCTGCGAACTGTGTATCAATTCGATCATGCGCATTGGCCACCGTACAAATTCCCCCGTTCACACCG
GGGACTGCTTGGAATGTACCAGTACTGGTAGCGTCGTGTGCTAAGTGGAAGCTACGTGAATTACCAAGAGACCTTCGTTA
ATTCAATTTATAATCCGAGGGGTAAAACTCGCACATTGTTTCACCGCCTCGGATCGTCAGAGGCAGGAGGAAGCTGAAGC
TT-TTCTTCAGAAAAATAAACGAGAGCA---------------TAGAGCTGAACTGGC--CTCTGCCTCCCCGTTTGAAA
CGAACTTCTCATGACGGCTATTTAGCCACGTTTTTTTCCCTCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTGCTG---A
TTATTAGTGGCACGTACGTAGAGCGGCTGGTGCGAGTGCTATATATGCCAAGGTCGTCCCCCCAGAAATGTTCGAACCGT
TGAACGAAATTAAACGGGAGAGAGAT--------AGATCGTACTAGCTCCCAGCCTCACGACGACTCTGCTCTGCTCTGC
CATTTGAAAAGAAAGGAGGTGAGGCGCTG-----TTTTTCTGCGCTGGGCGGGCGGCGGGCGACTTTGATGTGCTACGAG
CTGGCGGACCAACGTGGACTGCACGGCA---GCGGCGGCCGGACGGTGAAGGGCGAG---GGCAGCTCCGGGGCGCCGTC
GGGAATGACGACAATGGCGAGCCCGGCGGACTTCATGTCGGGCTACTACCAGGCGCAGGAGATGTCGACGATGGTGTCGG
CGCTGTCGCGGGTCGTGGCGGAGGACGACCCGTGGGCGCCGTCCGGCTCCGGCGCCGGGGCGGAGGGGTGGGGCTGGGAG
GAGCAGCAGGCAATGCACGCCGC------------CGGAGGAGGCGGCTACGTGCACGAGCTGGGGAGCTTCCCCGGCGC
GCCATCTTCAGAGTTCGCAGGTAACAAACAGTCAACACACGCATGCTATTGAAGCTTAGCTTGGTCGGGAAGAGTTTCTG
AGTTTGCATGCTCTGCTTTTGCCTTGGATTTGATATTGCTCCACCGAGCTTC---GCACGCTCTACTTTTTTGCCCGATC
ACATTTTTGCATGCTACTCCAGCTCGAAACGTGTCAGGCATGGGCAAAATCACCTTTCCAGAGTATACATCTTATGCATT
CAGAGGTTTTTTTTTTATCGGATGCATTCAGAGTTTCTTTTTT-ATCTGATGCATTCAGCGGTTTATTACTAGTATCCTA
ATAAGCTTGTAAAATAAAGGAAATGTCTATATCCGTCGGTGAAGCAAACGAAGTGGCTCACCCCCTAACGAAGAACTCAT
TTAGTGAAAAAATTTGTATGTTTTGGGAATCTATAATCCCTGATTTTATTTCTCACTATATTGTACTCCCTCTGTTCTAT
AATAGTATCAAACACGTTTTTGTATTATAGGATAAGGGAGTAAATGATATGTCTGTTATCAAAGGAATAAAATCTGTTGC
TTTCAAAAACACACGCTATAGCAACTTTGTTCTACCTCTAGTACAAAGTTATACTAAGCTTGAGACAGTTATTTTGAGAC
GGAGGGAGTAATATTTTACAAGAATATTTTAGAGGTAAAAAAACTAATATTGGCACCCCGGGTGTACATCATTCGGCTT-
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-----------ATAACTTAACTTAAACAAGAAGACAATCGATGAAGTTCGAACCTTTACGTTTCTAGCTCTGATCAGGTC
ATAAAGAATCGGTGAACACGTGTAGTGCCAGTTTTGGTCAGTGCAGAGCCCTAGGCACAAAATGTGTTATATGAAGAGAG
TTATTTCTTGGAAATAATAGAGGAAAATGCGTGCGGAACATGCAAGCGCGCGCGACCATAACAAACTGGTCGTACGGAGG
AACGGCGTGTAGCTCAAAGTCGAAACGTCGGACGGAACCGAGGCGCCTGGATTCCTCG--------TAGCTGACATAAGG
AAAATGAAACGAACCCTATCTCTTGTAATCCACTGCTGCACAGTTGTACGCCATTGAACCTAGTCTTG---TAATCCACT
GCACCTCTGCAACGCAACAAAGACA-----------CAGCTAAGTCTTCAGGTAGTACGTAGCATTTCATCGTACATATG
TATAAAATACAGTGCATCTTCGTGTCATGTACGTAGGAGTACATGCCAATATGTCATGGATGAGCTTGCGTGACGCGCAT
ACAACA-----ACGAGAATACGGTCGAGAGAGTTCATTTCTTTCCTGAAAAGGCAGTTTTTTTCCTTCATTTTTTCCTCC
TTTTG----CAACGAAAAGCGGTTCGAATTCTTGAGGTGGTGCTTATCGCTTTGCTGGAAGCATGAATATCTTTTCT---
---CTACTGCTTTCCAGTTCACATTCCTAAATTTAACCCCTCGGTGATCGGGACGGACGCGCTTTATTAACACCTTGCAA
ATCGCGTTCGGGTGCATGCACATACA----CACACTGCATGCGCGAGTGCACAACTTGGAACACGCTTGCGCTGCCTCGC
TTTGCATTCTCTCTGCTTTT------GCTT-GGCGCCTCGTCCCCGTGACACC------------------GTATAAATA
TGCTTCCGCGTCCGTGCGCAGGGTCGGATCAGAGCTCGGACACCCAGAGCGCGAGCGCGAGCGCGGCGACCATGGAGGAA
CACCGCTCCCGCTCCCCGGCGTCGTCCAACGTGGAGGCGGCGGAGGCGCCGCGCCGGCGGTACCGAGGGGTGCGGCAGCG
GCCCTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCGCACAAGGCGGCGCGCGTCTGGCTCGGCACCTTCGAGACGGCCG
AGGCCGCGGCGCGCGCCTACGACGACGCCGCGCTGCGCTTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGGACGCG
CGCCTGCACCCGGCCACCGTCGCCCCCGCCGCCGCGCCGGCCCGTGTGCCGATCGCCGCGGCGTCGGCCTCGACGCCCGG
CATGTACGCCGGCGCCGGGCCGGCCTCCGACTACCTGCGCTACCAGATGCTCCTGCAGGGCAGAGG---CGCCGCCGCCA
ACCAAGGCAACCTTCTCTCGTTCTACGGC------GGGGGCGGCGGCGGCGGCGGCATGTCCAGCTCGTACGGCGGCGG-
--C---------ATGAGCAGCTCATATGGCGGCGG------CGGCGG---------CACCATGAGCGGTTTCCTGGGCTC
CTACTACTCGTTCCCGACCTCCTCCGTCTCGGTGGCCACCGTCCCGTCATCCTCCTCCGCGTCCTCTGCTCCGGGCCACT
ACTACTCGTCGCCGCACGACTCGCAGCAGCACCAGCAGCAGCAGGGCAACGCGGCGGCGGAGTGGAGCTGGGAGAGCGCG
CTGGCGCCCTACCCGGGGACGACGACGGCGGCCTCCTGGTCCGACTCGAGCCAGCAGCCGTACCACCCGCCGCACACCCA
ATAGCGCAGCCG---------CAAAGCCAAGGCCAAGATTCTGCGCCGTCTCTGGAAGAAAGAATAAGTTGTGTACGGAA
GGCGACGGAGACGGGCGCAGCAGCAACCAG-------------------CAAGCAGAGGAAGGTTGAGAATGATGGCGTC
ACTCACCGA------------GGGGCATGTGTTGATTGACAGCTATGGGC-GTGCTCATTTTGTTCGTTCGTTGATTATT
AGTTTGGGAGGTGGTGCGGGT-CGCCCCGTTTTTAGTACTTTCTGCTTTGGTTATTA---CTGCAAATTA-----AAAAA
AATGGAAGAGCGAGCTTGATGCTTGCAGATGGG------GATTGGATACTTTTGGGGAGGTTTAATCAGAGTCATTTGG-
----------------------GAAAAATAATGAATGTTACG---------------TGCTACCTGGACTTGTAGTGTGT
TCT---CTG----------------------------------CAAAACATGGCATGGATTAGTGATTCCTAGTATCGAT
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTTAAAGAAAC---------------CAGTGTTCGAACAAGAAGGGATAGTA
CTCTCTACCATAATAT--------------------------------------------------------------TA
TGTCGTTGTATGTAGGGAGTATTATACAGACGCGATCCATTCCACGGCCGGCCAGTG-AAAAGAGATGGTGTCATGCTCT
GCTACGCTCGGCTTTGATGCCTGTTTGTTTTGCATTTGTGGC-GATGCCATTATTTTCCTTCTACTGACCTTTTTGTAGC
T-------------------------------------------------------------------------------
-------------------------------------------------------------TTTGATCGTTCTTATCTTG
TTTAACGAATCTATGCCACCAT-----ACTCAAACACTCATGTCAATA-----AATACAATCTTTTGGCTCACATCTAAA
TTCTTTCACCTAGGAGGAGATACTTCTCACTTTATTTTTTTTGAAACGGAGGCAAAAGTTTTGCCTCGTCTCATTAATTA
AGAAGAGTTTGGAAATACATAGACCCCAAAAAATAAGCCTAATCTCGCGGCATTAAAGAACACAGACGCTTAGCCCTTGC
CAACCTCCGTAACCCAGCATCGGTCTTAATCTTAGATGTGATTACAGTTGGCAAGGATGACACATTTCTAAATACTCGTG
TTTCGCTCGTTCCAAATCTTCCAAGAGACCAACATGACGAGGGATGCAAGACCCTTTCTCATGTTAGCATTGACGCCCAC
CGTGTGGTGCCACCACTCCATCACGGTGTGGAAGTTGCTCCAGCTAGTGATATCCAGATTGGTCAAACCAATCCAATTTT
TGATCTCCCTATGAATATTGAGCATGGTGCACTTCCTTTTAACAATAG--------------------------------
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---------TCTATCGACCTTTTTTGCCGCCATCAAATGCACCCCTCAACCCTTGTCAAGACATATTAAAAAGAATCTTG
TCTGGAATTGTTTTTGGCGTAAAGAAGAAAAGAAAAATAATTTTTGAGTAACTGGAAAGAAAAGAAAAATACTAATGCAA
CATTACATAGACTTGTATGGGCCAGAATTGGGCTC
>chr3D_1
ATTTTGCGAATGAGTCAAGGAGCGAGAGCAGCATGAGCAACATGATCCCGCTAAACATTGAC----CGGCCCGTTATCCA
TCCAACCTCCTCCGAGCATATCCCGTTATCCCTATGCTGAAGCAGTCCGGTCACTCGTCAGTGGCAACTCAACGAAACAA
TCCACCACCGTCGCGCGCGGTT---ACCTGAAGAAAGTTATACCACTACTACTA------CTAGACAGTTCGTTGGAAGG
AAAACTACCCAAGGAAATGATCAAAATCGCGACGGGAAAAAGAAGAA-----AAGAAAGGTAGCGAAATGAGATAAGCAC
GCTCCACATAACGAACTGCTCCTCCTCGTCGCTGACCGCGTCAACCGGCCGTCCAGGGTGCGTGAACCACGTACGCGCTC
CTCCCTCCCTCATGTCGGCGAAAGCGATCGGTACCGGAGCAAGTAGTGGAGCAGTAAGTAAATCTGACCCAAGCCTCGGC
----------------------CCTCAGATAATACAACACGAGGCTGCGTATTCGAGCGACATCGAATGGATGGATCGGA
TCCAACGCTGCCGACCTATGAAACTGTGTG---TTCGATCATGCGCATTGGCGACCGTACGGA--CCCCCGTTCACACCG
GGGACTGCCTGGAATGTACTAGTAGTAGGCTAGTAGCAGCGTAAGTGGAAGGTACGTGAATTACCAAGAGACCTTCGTTA
ACTAAATTTATAATCCGAGGGGTAAAACTCGCACATTGCTTGACCGCCTCGGATCGTCAGAGGCAGGAGGAAGCTGAAGC
TTTTTCTTCAGAAAAATAAACGAGAGCAGAGGAGGGACGAGGCTACAGCTGAACTGGCCTCTCTGCCTCCCCGTTTGAAA
CGAACATCTCATGACGGCTATTTCGCCACGTTTTTTCTTTCTTTC-------TCTTTCTCCCTTTCTTGCTTGCTGATTA
TTATTAGTGGCACGTACGTGCTCCGCCGCTAGCCTA-GCTATATATGCGAAGGTCGCCCCCCG-GAAATGTTCGAAGCGT
TGAACGAAATTAAACGAGAGAGAGAGAGTGAGAGAGATCGTAGTAGCTCCCAGCCTCACGACGACTCCGCTCTGCTCTGC
CATTTGAAAAGAAAGGTTCGGAGGGAGGCGCTGTTTTTTCTGCGCTGGGCGGGCGGCGGGCGACTTTGATGTGCTACGAG
CTGGCGGACCAACGTGGACCGCACGGCAGCGGCGGCGGCCGGACGGTGAAGGGCGACGACGGCAGCGCCGGGGCGGCGTC
GGGAATGAC---AATGGCGAGCCCGGCGGACCTCATGTCGGGCTACTACCAGGCGCAGGAGATGTCGACGATGGTGTCGG
CGCTGTCGCGGGTCGTGGCGGAGGACGACCCGTGGGCGCCGTCCGGCTCCGGCGCCGGGCCGGAGGGGTGGGGCTGGGAG
GAGCAGCAGGCAATGCACGCCGGCGCTGGCGGCGGCGGCGGCGGCGGCTACGTGCACGAGCTGGGGAGCTTCCCG-----
----TCTTCAGAGTTCGCAGGTAACAAACAGTCAACACACGCATGCTATTGAAGC-TAGCTTGGCCAGGAAGAGTTTCTG
AGTCTGCATGCTCTGCTTTTGCCTTGGATTTGATATTGCTCCACCGAGCTTCTCCGCACGATCTGC--TTTTGCCCGATC
GCATTCTTGCATGCTACTCCAGCTCGAAACGTGTCAGGCATGGGCAAAATCTCCTTT--TTTAGAGTGTC----------
---------------------------------------TTTT-ATGCGATGCATTCAGAGGTTCATTACTAGTATCCTA
ATAAGCTTGTAACATAAAGGAAATGTCTATATCCATCGGTGCAAAACAGCAAGTTAT-----------------------
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------AGTAATATTCTACAAGAATATTTTAGAGGTAAAAAA-CTAATATTGGCACCCCGGGCGTACACCATTCTTCTT-
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-----------ATAACTTAACTTAACCAAGAAGACATTCGATGAAGTTCGAACCTTTACGTTTCTAGCTCTGATCAGGTC
ATAAAGAACCGGTGAACACGTGTACTACCAGTTTTGGTCAGTGCAGAGCCCTAGGCACAAAATGTGT--TACGAAAAGAG
TTATTTCTTGGAAATAATAGAGGAAAATGCGTGCGGAACATGCAAGCGCGCGCGAGTGTAACAAACTGGTCGTACGGACG
AACGGCGTGCAGCTCAAAGTCGAAACGCTGGACGGAACCGAGGCGCCTGGATTCCTCGTAGCTGTCTAGCTGACATAAGG
AAAATGAAACAAACCCTATCTCTTGTAATCCACTGCTGCACAGTTGTACGCCATTGAACCTAGTCTTG---TAATCCACT
GCACCTCTGCAACGGAACAAAGATA-----------CAGCTAAGTCTTCAGGTAG-------CATTTCATCGTACATACG
TATAAAATACAGTGCATCTTCGTGTCAAGTAGGA-------CATGTCAATATGTCATGGATGAGCTTGCGTGACGCGCAT
ACAACAC-----CGAGAATACGGTCGAGAGACTTCATTTCTTTCCTGAAAAGGCAG-TTTTTTCCTTCATTTTCTTCTTC
TTTTG----CGACGAAAAGCGCTTCGAATTCTTGAGCTGGTGCTTATCGCTTTGCTGGA-GCATGAATATCTTTTCT---
---CTACTGCCTTCCAGTTCACATTCCTAAATTTAGCCCCTCGGTGATCGGGACGGACGCGCTTTATTAACACCTTGCAA
ATCGCGTTCCGGTGCATGCACATACA----CACACTGCATGCGCGAGTGCACAACTTGGAACACGCTTGCGCTGGCTCGC
TTTGCATCCTATCTGCTTTC------GCTTTGGCGCCCCGCCCCCGTGACACC------------------ATATAAATA
TGCTTCCGCGTGCGTGCGCAGGGTCGGATCAGAGCTCGGACACCCAGAGCGC---------------GACCATGGAGGAA
CACCGCTCCCGCTCCCCGGCGTCGTCCAACGT------GGTGGAGGCGCCGCGGCGGCGGTACCGCGGGGTGCGGCAGCG
GCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCGCACAAGGCGGCGCGCGTCTGGCTCGGCACCTTCGAGACGGCCG
AGGCCGCGGCGCGCGCCTACGACGACGCCGCGCTGCGCTTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGGACGCG
CGCCTGCACCCGGCCACCGTCGCCCCCGCCGCCGCGCCGGCCCGGGCGCCGATCGCCGCGGCATCGGCCTCGACGCCCGC
CGTGTACGCCGCCGCCGGGCCGGCCTCCGACTACCTGCGCTACCAGATGCTCCTGCAGGGCAGGGG---CGCCGCCGCCA
ACCAGGGCAACCTTCTCTCGTTCTACGGC------GGGGGCGGG---GGCGGCGCCATGTCCAGCTCGTACGGCGGCGG-
--CGGCGGAGTCATGAGCAGCTCTTATGGCGGCGGTGCCAGCGGCGG---------CACCATGAGCGGTTTCCTGGGCTC
CTACTACTCGTTCCCGTCCTCCTCCGTGTCGGTGGCCACCGTGCCGTCCTCCTCCTCGGCCTCCTCTGCGCCGGGCCACT
ACTACTCGTCGCCGCACGACTCG---------CAGCAGCAGCAGGGCGACGCGGCGGCGGAGTGGAGCTGGGAGAGCGCG
CTGGCGCCCTACCCGGGGACGACGGCGGCGGCCTCCTGGTCCGACTCGAGCCAGCAGCCGTACCACCCGCCGCACACCCA
ATAGCGCAGCAATCGCAAAACCAAAGCCAAGGCCAAGATTCTGCGCCGTCTCTGGAAGAAAGAATAAGTTGTGTACGGAT
GGCGACGGAGACGGGCGCAGCAGCAGCAAGCAGAAGATCGAGAAAAAAACAAGCAGAAGAAGATCGAGAATGATGGCGTC
ACTCGCTGA------------GGGGCATGTGTTGATTGACAGCTATGGACGGTGCTCATTTTGTTCGTTCGTTGATTATT
AGTTTGGGTGGTGGGGCGGGGTCGACCCGTTGTTAGTACTTTCTGTTTTGGTTATTA---CTGCAAATTAAGCGAAGAAA
TGGAGGT----------------------------------TTGGATACTTCAGGGGAGGTTAAATCAGTGTCTTTTGG-
----------------------GAAGCTTTAATCGTGTCGTTTGGGAAAAATAATGTTGCTGCGTAGATTTGTAGTGTGG
TCTCTACTG----------------------------------CAAAGCATGGCATGGATTAGCAGCTCCGATCGATTTT
TATTAGGAATGTATGATGATGCTATCTTAGAAGTGTCATGTAGGATACATGATGAGATGGAGGAGGAAGAACTCATACTA
AGACAGACTTGTCTTCTTTTATATTTAAAAGAAAACAAGAGATGATCTTTTAGCATAATGTCTCATCATGTTTTTAGAAA
TAACTACAGTAATTACTAAGAAATGATTCATTGTAGACATTTTTTTGTTCATCTCTAAATTATATGCAAGACTTAAAATA
AAATTATCTTATAATCATTGTATATGCCTTTAAAGAAACCACTGAATTCTAGTACAATGTTTGAACAAGAAGAGATCGTA
CTACG---------------------------------------------------------------------------
-----------------------ATACAAACGCGATCCATTCCACGGCCGGCCGATGGAAAAAAGATGGTGTCATGCTCG
GCCTTCATGCCATTT-----TTTTTTTTTTTGCATTTGTGTGTGATGCCATTATTTTCCTTCCACTGACCTCTTTGTACA
ATGTTTAATTTTTTTTACGGGAAATTAGGGCGGCCTGTGCCAGCCTGAACTTATATTTGCTGGGGAGAGATGACGACATT
CATGTAGTTACACAGGGTGAGGAAAAAGAAAGATTAAAGGGGAGGAGGGGGTACTGTTCAATTTGATGGGGGTTTTCATG
TTTGAAGATAAAAACATGTATATATGTACACCTCTATATGTGAAAACCACGTCAATACAATCTTTTGGCACAACTCTAGA
GCTCGAAGACAACTATTACACTTATATTAAAAGCGCACAGATGCAAGTGCATAGTCAATTCGGATCAAGTTTGCAAACCA
AAGGAATGTCGAAGTCTTAGCATTTTGAATCTTGTGAAGTATGCCACTGCTCTTCGTCTGTGATGGCTTTGGCTTGACTG
GGATGATCCACCGGGGCGTGGTGTGGTTTGGGGACGGCATGCACTAATGAGGATCGTGGCCTCTTCGCGGCAGCCACTAA
GGTGATGGAACTAAGGAAAATTTTCGGGAGTCCTCTTGGCTTGAGGGTCTCAAACCCAAAGACATTGCACTTAAGTTTTT
TGCGATATCCCGCAAGAAAAGATGATCTGCTGCTATGGCTTTGAGGGATGGACATTGGATAGCTCAAATTGACACCCAAA
TAAGCCTCTTTTTTGGCACATCCAACAATTCACGGCTCTAGGAGAAGCTTGCTAATGTCATCGTCCAACTGAGCATCAAG
GATATCATCATGTGGAAGTTCACCAAGGATGGAAACTACTTCACTACGACCGCCTACATGACCCCGTTTACTAGGCTCAC
CGGGTCTAGCTTACAAGCCACGATTTGGAAGGCTCCCCCTCCCCCTCGGGCAAATTCTTCGCTTGGCTACTCACTCAAAA
AAAGATGTGGGCGGCGGATAGACTCCAACGACGAGGATGGCCAAGTTATGCCCACTTTGCAACCAAGTGCAAGAATCTGT
GGCTCACCTTCTCTTCAAGTGTCGGTACTCTATATTTGTTTGGAATGATGTGTTCTTCTGGCATGATCTCCATATATCTC
AATAGTTCAATGGCACCGGTTTGACATGGTCAAATCTTAGTGGGTTGGGAACCCCTCGTCGAAGGGCCTCTCAATTTTTT
TACAATAAATCTACCGACCTTTTTTGCCGCCATCAAATGCACCCCTC---------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3A_1555
--------------------------------------------------------------------------------
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--------------GCTTTCGCCTCGGATTTGATATTGCTCCACCGAGCTTGT--GCACGCTCTGC--TTTTCCCCGATC
GCATTCTTGCATGCTACTCCAGCTCGAAACGTGTCAGGCATGGGCAAAATCTCCTTTTTTTTAGAGTATC----------
---------------------------------------TTTACATGCGATGCATTCAGAGGTTCATTACTAGTATCCTA
ATAAGCTTGTAAAATAAAGGAAATGTCTAAATCTATCGGTGCAAAACAACAAGTTAT-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------AGTAATATTTTACAAGAATATTTTAGAGGTAAAAAA-CTAATATCAGCACCCGGGGCGTACACCATTCTTCTTA
GGGCATGTACAATGGTGGCATATGGATACATATGCCCCATGCCAAAAAGTAATTTGAGGCATCTACATTTATTTTTTCTC
CCCAATGCAAGCTACCACTAGTGGGCCTTAGTAAGAAATAAAAAATAAAAACTCTAATATACATGCATCTCTACTTTTTA
CTTCAACCTTTTCAGCTTTTATCACCGGACCACACTTTTTCTCTTTAAGCACCCGCCTCCTGAAGAGGATCCCGCTTCCC
TATCCGAATCTACTTTACATCATATTCGATCCTACATGGCATGCAAGGCATCACCTTGAGGCTATGCATTGTACATGCCC
TTAATAGTAGCATAACTTAACTTAACCAATACAACAATCGATGAAGTTCGAACCTTTACGTTTCCAGCTCTGATCAGGTC
ATAAAGAATCGGTGAACACGTGTACTGCCAGTTTTGGTCAGTGCAGAGCCCTAGGCACAAAATGTGT--CACGAAAAGAG
TTTTTTCTTGGAAACAATAGAGGAAAATGCGTGCGGGACATGCAAGCGTAACAAACTG---------GGTCGTACGGACG
AACGGCACGTAGCTCAAAGTCGAAACGCCGGACGGAACCGAGGCGCTTGGATTCCTCGC--------AGCTGACATAAGG
AAAATGGAACAAACCCTATCT----------------GCACAGTTGTACGCCATTGAACCCAGTCTTGTACTAATCCACT
GCACCTCTGCAACGCAACAAAGATAGCACAAAGACACAGCCAAGTCTTGAGGTAG-------CATTTCATCGTACGTAC-
---AAAATACAGTGCATCGTCGTGTCGTGTG----------CATGCCAATATGTCATGGATGAGCTTGCGTGACGCCCAG
CCCAGGCGCCGACGAGAATACGGTCGAGAGGCTTCATTTCTTTCCTGAAAAGGCAGGACG-TTTCTTCATTTTCTTCTTT
CTTTTGCGACGACGAAAAGCGGTTCGAGTTCT-GAGCTGTTGCCTCTCGCTTTGCTGGA-GCATGGATGTCTTTTCTCTA
CTGCTACTGCCTACCAGTTCACATTCCTAAAATTAACCCCTCGGCGATCGGGACGGACGCGCTTTATTAACACCTTGCAA
ATCGCGTTCGGGTGCATGCACATACTACTGCACACTGCATGCGCGAGTGCACAACTTGGAACACGCTTGC--------GC
TTTGCATTCTTTCCGCTTTTCAATTCGCTT-GGCGCCTCGTCCCCGTGAGGCCGTGACATCGGTGGCCTCTGTATAAATA
TGCTTCCGCGTGCGTGCGCAGGGCCGGACCAGAGCTCGGAC---------------------------ACCATGGAGGAA
CACCGCTCCCGCTCCCCGGCGTCGTCGAACGT------GGCGGAGGCGCCGCGCCGGCGGTACCGCGGGGTGCGGCAGCG
GCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCGCACAAGGCGGCGCGCGTCTGGCTCGGCACCTTCGAGACGGCCG
AGGCCGCGGCGCGCGCCTACGACGACGCAGCGCTGCGCTTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGGACGCG
CGCCTGCACCCGGCCACCGTCACCCCCGCCGCCGCGCCGGCCCGGGCGCCGATCGCCGCGCAGTCGGCCTCGACGCCCGC
CATGTACGCCGGCTCCACCCAGGCCTCCGACTACCTGCGCTACCAGATGCTCCTGCAGGGCAGGGGCGCCGCCGCCGCCA
ACCAAGGCAACCTTCTCTCGTTCTACGGCGGGGGCGGGGGCGGG---GGCGGCGCCATGAGCAGCTCGTATGGCGGCGGT
GTC---------ATGAGCAGCTCCTATGGCGGCGG------CGGCGGCGGCGGCGGCACCATGAGCGGTTTCCTGGGGTC
CTACTACTCGTTCCCGTCCTCCTCCGTCTCGGTGGCCACGGTGCCGTCCTCCTCCTCCGCGTCCTCCGCTCCGGGCCACC
ACTACTCGTCGCCGCACGACCCGCAGCAGCACCAGCAGCAGCAGGGCGACGCGGCGGCGGAGTGGAGCTGGGAGAGCGCG
CTGGCGCCGGACCCTGGCACGACGACGGCGGCCTCCTGGTCCGACTCGAGCCAGCAGCCGTACCACCCGCCGCACACCCA
ATAGCGCAGCAATCGCGAAGCCAA--------CCAAGATTCTGCGCCGTCTCTGGAAGAAAGAATAAGATGCGTACGGAC
GGCGACGGAGACGGGCGCGGCAGCAGC------------------------AGCAGAGGAAGATCGAGAATGATGGCGTC
ACTCGTGGTCGGGTCGGGTCGGGCGCATGTGTTGATTGAGGACAGCCATGG--GCTCGTTTTGTTCGTTCGTTGATTA--
-GTTTGGGCGGTGGTGCGGGGCCGCCCCGTTTTTACTACTTTCTGTTCTGGTTATTATTACTGCAAATTAAGAAGAAGAA
AATGGAAGAGCGGGCGTGACGCTTGCAGTTGCAGGTGGAGATTGGATGCTTTTGGGGAGGGTTAATCAGAGTCATTTGGC
GAGGTTTAACCGCGTCATTTGGGAAAAATAATGAATGTTGCG---------------TGCTACCTGGACTTGTAGTGTGT
TTTCTACTTTCTTCATTTCAAATTACTCGTCGTGGTTTTTGTTCAAAACATGGCATGAATTAATGACTCG--GTATCAAT
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CATTAAAGAAGT---------------CAGTGTTCGAACAAGAAAAAATAGTA
CTCTCTACCATAATATATGTCGTTTTAGCAGCTTGGTATGGATCATGTCTTAGCTCAAACTAAACTGTTAAAACGACATA
TGTCATGGTATGGAGGGAGTATTATACAGACGCGGTCCATTCCACGGCCGGCCAATG-AAGAGAGATGGTGTCATGCTCT
GCTAAGCTCGGCTTTGATGCTTATTTGTTTTGCATTTGTGGC-GATGCCATTATTTCCCTTCTACTGACCTTTTTGAAGC
T-------------------------------------------------------------------------------
-------------------------------------------------------------TTTGATCGTTTTTATCCTG
TTTAACGAATCTATGCCACTACACTGCACTCAAACACTCGCCTCAATG-----AATACAATCTTTTGGCACACATCTAAA
TTCTTCCACCTAGGAGGAGATACTTCTCACTTCAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
----------SS------------------S--S---------------S------------SSSS-----S--------
------------S-------------------------------------------------------------------
--------------------SSSSS-----------------------------SSSSSS--------------------
--------------------------S--S-----------SSSSS-SSSSS--------S--------S----------
-------------S-------------SS------------------------------------------S--------
----------------------------------------------------------------S-----SS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-------------------------S-----------------------------S--
-----S-S---------SS---SSSSSSSSSSS-------------------S-------SS-SS---------------
--------S----------S----S-S-SSSS--S-SSSSS----------S----------------------------
-S-S----------------------------------S--S--------------------------------------
---------------------------------------------S----------------------------------
-----S-----------------S------------SSSSSS-S-SSSSSSS-------SS-------S-----------
-------------------SSSS--S-SSSS--SSSS-----------S-------S-----SS------------S---
----------------S--------S----------------S------------------------S------------
----------------SSSS----SSSSS---------------------------------------------------
-------------------S------------------------------------S---------S--------S----
---------SSS-------------------S------------------------------------------------
-----------------------------------------------------------S--------------------
----------------------S---------------S--S--------------------------------SSSSSS
SSSS---------------------------------------------------S--------S-S-------------
---S------------------------------------------------------------S-SS------------
S----S---------------------------------------------S-----SSSSSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-----------S----S---------------
----------------------------------S------S-SS-S-SS----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------------------------------S-------------------S-----S-----SS----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
------------------------S------------------------------------------SS--S---S----
--------------------------------------------------------SS--------------------S-
---------------------------S----------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------S-------------------------------SSSSSSS----------------S-
-------------------------------S-SSSSSSSS---------------------------------------
-------------------------------S------------------------S----------------S-S--S-
----------S-------------------------S----------------------S--------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------S---------------------------------------------------------------------
-----------S----------------------------------------SSSSSSSSSSSSSSS-------------
--------------------------------SSSSSS---------------------------S--------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-S--------------------------------S
---------------------------------------------------------------S----------------
-------------------------------------------SSSS-------S-------------------------
-----------------------S--------------------------------------------------------
----------------S-------------------------S-----S-------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------SS-------------------------------------------------------------------S
-------------------------S-S----------------------------------S-S---------------
----S-S-----------------------------------------S-------------------------------
--------S-----------S------------------------S----------------------------------
------------S--S---S--------S--SS-----------------------------------------------
---------------------------------------S----------------------------------------
------------------------------------------------------------------S---S------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----S-S-----S-----------------------------------------S-------------------------
----S---------------S-S---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S-----S--
-------------------S-S-----------------S-------S---------------------S----------
-----S--------------------------S--SSSSSS--S--SS-SSSSSSS-S--SS-SSSSSSS-SSSS--SS-
-SSSS-SS-S-S-SSSSS-SSSSSSSS--SSSSSSSSSS--SS-SSSS-SSS--SSSSSSSSSS-S-SS-SSSSSSSSSS
SS-SSSS-SSSSSSSSSSSSSS--SS-SSSSSS-SSSSSSSSSSS-S-SS-S-SS-SS-S-S-S-SS-SSS-SS-S-SSS
SS-SSSSSSSSSS-SSSSSSSSSSSS-SSSSS-SSSSS-SSS--S-SSSSSSSSSSSSSSSSSS-S---S-S-S-SSSSS
S-S-SSS-S--S-S-SSSS-SSSSSSSSSSSSSSS--SSSSS-SSS-SSSS-SSSS-SS-S-SSS--SSSSS-SSSSSSS
-S-S-SS-S-S-SSSSSSSSSS--SSSSSSSSSSS--S-SSSSS-SSS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_348
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAACGGACTGCTCCTCCTCA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_1890
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GAAGTGGCTCACCCCCTAAC-----------
--------------------------------------------------------------------------------
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-----------------------------------
>forward_590
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCGACCTGCGAACTGTGTAT--------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_2665
--------------------------------------------------------------------------------
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------------------------GTGCCAGTTTTGGTCAGTGC------------------------------------
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-----------------------------------
>forward_1909
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-------------------------------------------------GAAGTGGCTCACCCCCTAAC-----------
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-----------------------------------
>reverse_3199
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------------------------------------------------------------------------------CC
TTTTGCAACGAAAAGCGG--------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>forward_2223
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-------------------------------------------CTAATATTGGCACCCCGGGT-----------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_4412
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-----------GCAAAGCCAAGGCCAAGATT-------------------------------------------------
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-----------------------------------
>forward_3451
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------CTGCCTCGC
TTTGCATTCTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_5921
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CAACCTCCGTAACCCAGCAT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
