>input_sequence_21996
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-----------------------------------------------A-------------TGGTGAGGCTCCCGTACCT
GACCGCGCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCACTTCCGCGACTTCTTCCGCCGGATCCTCG
ACGCCGGCAAATCCAGCAACCTCAAGGTCCGTCCGTTACTTCAGATTCGCCGTCTTCTTCTCCCCCCCGGTGCTGACGCT
GCTCGTGCTGCTGACTCCGTAGGGTTACGCGCCCATTTGCCTGGGGTACGAGGATTTCTACACGCGCCGCCTCTACCTCC
GCATCCAGGTGAGATCTCCTCCCCACTTTGACGATTCACAGAATTACAACTTGTTTTTTCTCTGAAGGTGGGCTTGGATC
ATGTGATTCTGAGTTAGTTGACTTGAGTTGCCTAGTGGTGGTGGGCGTGGTAAATTTAGTGCCTGCTTAGGTAGATCACA
TGATGGAGACTTGGAAACTGTCCCAACTGAAAATTCATTTGATCTGTTGTTGTGCTTGCTAGCTTTTTTTAGCC-TTTTT
TTCTTTGCCTTTTATGTACAATACATAAACCCCAATTTTTATGCCAGAGCCATGAGATCTCAACTGAAACTTTGGTCCAT
TCTTCTAATTAATGGTTGAATGAAGTGAAAGGGTTGCTTGTTTTGAGCCATCTTGAATGTGTCATTCATTCTTCTGCATT
TTTCTGTGCTATTCCACTCCAATGTG-CAGAATAAATAGTTATCAGAAAGAACTAATCTTTTGTCTGAGTAGATGTGTGT
GAAACCATATCTCTACAATGCGTCCAATGATTTTT--TATGGAGAGTGATGTGTGGGATGATGCTTCGCTATGATATGTG
CACCCTCAGGAATGACATGTTTATCACTTCTTTTGTTTACCTTTCCTTGTTGGGTGGGCAGGACTGTTTTGGCCGACCTA
TTGCCAGTGCGCCCGATGCTTGGTTCGATGTAGTTGAGCGTCACTCAAATGACGGCAACAAGACACTTCAGTATGTTTTT
CTCACATTTGACTCCACACCTAATTAGCATAAGCAAATGTTATCCCAGGATGAATGCTAGTCTCTAATTCAGTGCATCTT
TAACGCAGACGTACCACAAAAACATCCAAGTGTCTTAACTTGGGTTCCTACAACTACCTTGGTTTTGCTGCAGCAGATGA
GTACTGCACTCCTCGTGTTATTGAGTCACTCAAGAAATATTCTGCCAGTACTTGCAGTGCCAGAGTTGATGGAGGTAGGT
GCTTATATGTCCATGCCATAGTTTGCCTCCATTTAATACTTCAATAGTATGGTGAAACTAACGCTAATTGATCTGTGTAT
AATCTTAGGAAATACTAAGCTGCACACGGAGCTCGAGGAACTAGTTGCACGATTTGTTGGCAAGCCTGCGGCTATTCTTT
TTGGCATGGGTTATGTGACAAATTCTGCGATCATTCCTATTTTGATTGGGAAGGTCTGTGGTGAGCAGAGTATTTTATTT
GTCTTATTTTTTTCTGATACATGCTGGACTAATGTATTTTAATGATACCAGGGGGGACTCATAGTTAGCGATTCATTGAA
CCATATTTCTATAGTGAATGGAGCCAGGGGTTCAGGGGCTACTGTCCGGGTTTTTCAACATAACAGTAAGCTCACTAACA
GCTGCATCTCATGATGTGTACTTAACGATGAGGCAGGAAGTTTAATGTTTCCCTTATTTTCTTCCAGACCCTGCACATCT
GGAAGACGTACTGAGGGAGCAGATTGCAGGGGGGCAACCTCGTACACACAGGCCATGGAAGAAGATAATTGTGATTGTTG
AGGGAATTTATAGCATGGAAGGGGAGTTATGCAACCTTCCTGAGATTATGGCTGTCTGCAAGAAATACAAGGTGTGAGAA
TTGCGCATACCGACTCCTTGTTCTGTT-ATCAGTAATGAAAAACTGTAGTTCCTTTGCACGCTAGAAGTGGTACTTATGT
CATACATAGTATTCCCTCCGATCCATAATAAGTGTCGCAGTTTTGAACTAAGGTTGAACTAACCTTTGTTCAAAGTTGAC
ACTTATTTTGGATCGGAGGGAGTACTGCACTTCACAAGCTGTTCAAAAATTTCAAACTGGTAGTGATGTATCA-------
-GTGTATTGACTTGGAGTTCTTATAAACATCTTAATAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTT
GGAAAGACTGGAAGAGGTGTATGTGAACTACTAGGAGTGGATCCAGCTGATGTTGACATCATGATGGGAACATTTACAAA
ATCGTTTGGATCGTGCGGAGGTTATATTGCAGCATCAAAAGTATGAAAGGTCCACCTACCAATTCTTGACTCAACGA--T
ATATATTTGATAAATCTGACCCATATGCCATTCTATATTCTTAGGAGATCATTCACCATCTCAAGCACGCATGCCCAGCC
CATATTTATGCAACATCCATGTCGCCTCCAGCAGTCCAGCAGGTCATCTCTGCGATAAAGGTCGTCCTTGGGGAAGATGG
ATCTAACAGAGGTATATCAGGAAGGATTTAATGCTTTTAT-GGCTTCCATGTGTCTCTTGTCTTGGGGAAATTCCTAACG
CAGTCGTTGCTGTAAATAGGGGCAAAGAAACTTGCTCAGATTCGGGAGAACAGCAATTTTTTCCGTTCAGAGCTTCAGAA
AATGGGTTTTGAGGTGCTGGGAGATAATGACTCACCTGTCATGCCTATCATGCTTTACAATCCTGCTAAAATTCCTGCAT
TCTCAAGGGAGTGCTTGAGACAAAATGTGAGTTTTCATATGTAGCGGCCATCCATTAGATGCACGTCATCCTCTGTTTAT
TACAT-------TTGCATGAGAATTTCTCAAGCAGTTCATGTTTATGTTTTTATTTGGCGAAGTTCTGATTTTCTTTTCG
CTAATGTGGCATGTTCTGTAATTCTAGGTTGCTGTTGTGACTGTTGCATTTCCTGCAACGCCGCTACTACTTGCCAGAGC
TAGGATATGTATCTCAGCTTCTCAATCAAGGGAGGATCTAATTAAAGGGTTGGAGGTAAAGTCAACACTCTTATCAATGC
CCCTACATGCTTTGTTGCGACATTTTCACTTTAATACCAAATACAGAGTACAATTGATCTGAATCCATGGCATGTGAATG
CATTTGTAGATTATGCGTTGTGTACACAATACATCCCCTGATCATAATTTCATGCAAATTGTTCAGGTTATCAGCAAAGT
TGGTGATCTCATCGGAATCAAGTACTTCCCCGTTGAGCAAGAGAAGGTTGCATCTGTTGACAAACTTAAGAAGCTTGAGT
GA------------------------------------------------------------------------------
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--------------------------------------------------
>chr3D_1_TraesCS3D01G435900
TCTAATTCCCGCGGAATAAACCCTCGCAATTCCGGAAGCCTCTTAATTTCCAGCATGAGATGTCCATGATCAGATTTGTC
GAACGACTAATTCGTTAATGCAGCGACCAATAACAGAACAGTTAGATTGAATTATAACTGAAAGATCTGACCTCTGTAAC
CAGAATGAAATGAAGTTGTGTCCATGTTTGACCAATCAAGGATGGACAAGGACACAATCAAAATACGTCGGTGCCTCCCC
AAAGAATGTTGCGATGATGGATGATGGCCTTGACGTTTAAGCCGCAACACTTGCATATGTTGTTCGAGGATTTATAATTT
AAAACGGGGGCAATGCCTTCGATTAAAGAAATTATGGATTGCTCAAAACCAATCTTTTAGGGGATCCTATTACAATTTTT
CTAGAAC---TTTTTCTTGTATCTTGTACTCCCTCCGTCTTATAATATAAGAAATTTTTTGACACTATCGTGGTGTAAAA
AACACTCTTATATTACGGGGTGGAGGGAGTAATATATAAAAGCTGATAAACCTATTCTGTTAGCAGTTAATACTCCCTCC
GTAAATAAAGAAATATAAGAGCTTTAGTACTACTAATCGCCTCTCTGGAAGTAGGACTCGGTCGTCCTGAAAAATATTTT
GCAATAATCGGAGAATTTTCTCTTGAAACGAAATTACCTCGAAATCAACGGAGGTGAGGTGCGGTGCGATGCTCCGCGGG
TGAGCTGGAGTCGGACCCCC-CACCGTGCCCCTGACGCGCTGCGTCCGTCGTCGCCGTCCACGTTCAAACGCGCGTCGCC
ACCGCCCCGTTAGCCTCACCCCCCACCCTAATCCCAAAGATTCCAATTTT-CCAATCTAGCCAGTCGCCATCGGAAACCA
TTGGCCGGTCGCCACCCCACGCCGCCGTTGACGACCCCGTCGCGCGCCCAGGCGGCCAATAAACACCGCTCCCGCCCCC-
-CGCCCCCCGCCCCCCGCCGCGTGCCGCGTCGAAGGGAGCGAGGAGGA-------------TGGTGAGGCTCCCGTACCT
GACCGCGCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCACTTCCGCGACTTCTTCCGCCGGATCCTCG
ACGCCGGCAAATCCAGCAACCTCAAGGTCCGTCCGTTACTTCAGATTCGCCGTCTTCTTCTCCCCCCCGGTGCTGACGCT
GCTCGTGCTGCTGACTCCGTAGGGTTACGCGCCCATTTGCCTGGGGTACGAGGATTTCTACACGCGCCGCCTCTACCTCC
GCATCCAGGTGAGATCTCCTCCCCACTTTGACGATTCACAGAATTACAACTTGTTTTTTCTCTGAAGGTGGGCTTGGATC
ATGTGATTCTGAGTTAGTTGACTTGAGTTGCCTAGTGGTGGTGGGCGTGGTAAATTTAGTGCCTGCTTAGGTAGATCACA
TGATGGAGACTTGGAAACTGTCCCAACTGAAAATTCATTTGATCTGTTGTTGTGCTTGCTAGCTTTTTTTAGCC-TTTTT
TTCTTTGCCTTTTATGTACAATACATAAACCCCAATTTTTATGCCAGAGCCATGAGATCTCAACTGAAACTTTGGTCCAT
TCTTCTAATTAATGGTTGAATGAAGTGAAAGGGTTGCTTGTTTTGAGCCATCTTGAATGTGTCATTCATTCTTCTGCATT
TTTCTGTGCTATTCCACTCCAATGTG-CAGAATAAATAGTTATCAGAAAGAACTAATCTTTTGTCTGAGTAGATGTGTGT
GAAACCATATCTCTACAATGCGTCCAATGATTTTT--TATGGAGAGTGATGTGTGGGATGATGCTTCGCTATGATATGTG
CACCCTCAGGAATGACATGTTTATCACTTCTTTTGTTTACCTTTCCTTGTTGGGTGGGCAGGACTGTTTTGGCCGACCTA
TTGCCAGTGCGCCCGATGCTTGGTTCGATGTAGTTGAGCGTCACTCAAATGACGGCAACAAGACACTTCAGTATGTTTTT
CTCACATTTGACTCCACACCTAATTAGCATAAGCAAATGTTATCCCAGGATGAATGCTAGTCTCTAATTCAGTGCATCTT
TAACGCAGACGTACCACAAAAACATCCAAGTGTCTTAACTTGGGTTCCTACAACTACCTTGGTTTTGCTGCAGCAGATGA
GTACTGCACTCCTCGTGTTATTGAGTCACTCAAGAAATATTCTGCCAGTACTTGCAGTGCCAGAGTTGATGGAGGTAGGT
GCTTATATGTCCATGCCATAGTTTGCCTCCATTTAATACTTCAATAGTATGGTGAAACTAACGCTAATTGATCTGTGTAT
AATCTTAGGAAATACTAAGCTGCACACGGAGCTCGAGGAACTAGTTGCACGATTTGTTGGCAAGCCTGCGGCTATTCTTT
TTGGCATGGGTTATGTGACAAATTCTGCGATCATTCCTATTTTGATTGGGAAGGTCTGTGGTGAGCAGAGTATTTTATTT
GTCTTATTTTTTTCTGATACATGCTGGACTAATGTATTTTAATGATACCAGGGGGGACTCATAGTTAGCGATTCATTGAA
CCATATTTCTATAGTGAATGGAGCCAGGGGTTCAGGGGCTACTGTCCGGGTTTTTCAACATAACAGTAAGCTCACTAACA
GCTGCATCTCATGATGTGTACTTAACGATGAGGCAGGAAGTTTAATGTTTCCCTTATTTTCTTCCAGACCCTGCACATCT
GGAAGACGTACTGAGGGAGCAGATTGCAGGGGGGCAACCTCGTACACACAGGCCATGGAAGAAGATAATTGTGATTGTTG
AGGGAATTTATAGCATGGAAGGGGAGTTATGCAACCTTCCTGAGATTATGGCTGTCTGCAAGAAATACAAGGTGTGAGAA
TTGCGCATACCGACTCCTTGTTCTGTT-ATCAGTAATGAAAAACTGTAGTTCCTTTGCACGCTAGAAGTGGTACTTATGT
CATACATAGTATTCCCTCCGATCCATAATAAGTGTCGCAGTTTTGAACTAAGGTTGAACTAACCTTTGTTCAAAGTTGAC
ACTTATTTTGGATCGGAGGGAGTACTGCACTTCACAAGCTGTTCAAAAATTTCAAACTGGTAGTGATGTATCA-------
-GTGTATTGACTTGGAGTTCTTATAAACATCTTAATAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTT
GGAAAGACTGGAAGAGGTGTATGTGAACTACTAGGAGTGGATCCAGCTGATGTTGACATCATGATGGGAACATTTACAAA
ATCGTTTGGATCGTGCGGAGGTTATATTGCAGCATCAAAAGTATGAAAGGTCCACCTACCAATTCTTGACTCAACGA--T
ATATATTTGATAAATCTGACCCATATGCCATTCTATATTCTTAGGAGATCATTCACCATCTCAAGCACGCATGCCCAGCC
CATATTTATGCAACATCCATGTCGCCTCCAGCAGTCCAGCAGGTCATCTCTGCGATAAAGGTCGTCCTTGGGGAAGATGG
ATCTAACAGAGGTATATCAGGAAGGATTTAATGCTTTTAT-GGCTTCCATGTGTCTCTTGTCTTGGGGAAATTCCTAACG
CAGTCGTTGCTGTAAATAGGGGCAAAGAAACTTGCTCAGATTCGGGAGAACAGCAATTTTTTCCGTTCAGAGCTTCAGAA
AATGGGTTTTGAGGTGCTGGGAGATAATGACTCACCTGTCATGCCTATCATGCTTTACAATCCTGCTAAAATTCCTGCAT
TCTCAAGGGAGTGCTTGAGACAAAATGTGAGTTTTCATATGTAGCGGCCATCCATTAGATGCACGTCATCCTCTGTTTAT
TACAT-------TTGCATGAGAATTTCTCAAGCAGTTCATGTTTATGTTTTTATTTGGCGAAGTTCTGATTTTCTTTTCG
CTAATGTGGCATGTTCTGTAATTCTAGGTTGCTGTTGTGACTGTTGCATTTCCTGCAACGCCGCTACTACTTGCCAGAGC
TAGGATATGTATCTCAGCTTCTCAATCAAGGGAGGATCTAATTAAAGGGTTGGAGGTAAAGTCAACACTCTTATCAATGC
CCCTACATGCTTTGTTGCGACATTTTCACTTTAATACCAAATACAGAGTACAATTGATCTGAATCCATGGCATGTGAATG
CATTTGTAGATTATGCGTTGTGTACACAATACATCCCCTGATCATAATTTCATGCAAATTGTTCAGGTTATCAGCAAAGT
TGGTGATCTCATCGGAATCAAGTACTTCCCCGTTGAGCAAGAGAAGGTTGCATCTGTTGACAAACTTAAGAAGCTTGAGT
GAATAGTGACAATGGACAATTGGAAGAATTCTGCTGCTGTTATGCTAGATCTACTGGGTCATCTTGGTAGTGCACCATGC
CTTGGTTTTGCTCTTTTGTGCACCTCAGGACCCTTCATTTTCCTTTGTCTGAAGTGGTTTTGATTTTGTACAGACTGTAT
TATCATCCATCATAGTTTGAAACTTAACACGGCTCTATACACTGTTTTGTCGAATTCAAGAAAAAAGAAATCCCTGTACA
ACCTTGTAAGTGACTGAAATCATGTAGATACTAATTCCCTTCTTATTACTGACTTCCTTTCAAGGCGCAATATTAGCTGC
ATCGACCATGTCCGAAACCAGCTTGACAAAAAATATCTGAGAATCAGTATCTGTCAAATCTAGTTTATGTGACTTGATAC
TGGTGGGTC--TAGTTTCATAAACCTAGTGTCAGAACGGTTGAAACAAGATTGGATCTTAAAATCTCCCAAGTGCTCCGC
GTGTGTGGTTAAACACTCTTCTAGTGATCAGTGTGTAGGATAATACTGTTGTTTGATCATATTGAATTATCTCAACATGG
CTCCGCATCAGGTGCAGCTGTGTAGGTTTTACAGCTGTGTTTTTTCT-TTTTCTTTTGAGACCTCTCCTTT-AAGTACAG
CTGTAGACTGCTAGACTGTAGTATGGTTTTACAGTTGTGCTGCAAGGACATGCAGATATTATGGTGAACTGGTATGGCAA
GTCAGAAGAGGAACTTGGCCTTTTGCCAAT-GAGAAGAAACTAGTTGGGCCTTGGGCCCTTGGTTAATTTATGGATGTGA
GCAATGTGCATATCAAGGGAGGACAGTCACTCAAGTGCCACCATCATCAGGAGGCAGGTAAGGGAAATGCTGTGCCATGC
TGCTGGGACTGCACAAGCATGTGATTCAATTCAACTGGAGCAACACTGTCTCC---CTGGTCCAATGTGCCTCTGCTTGT
CTTGTTATGTTTTGGCTGCTAGCAAGATCAAGGAAGAGAAGAGAAAAGAG
>chr3A_155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTAAC
CAGAATGACATGAAGTTGTGTCCATGTATGGCCAATCAAGGATGGACAAGGACATAATCAAAATACGACGGTGCTTTCCC
AAAGAACGTTGCGATGATGGATGATGGCCTCGACGTTTAAGCCCCAACACTTGCATATGTTGTTCGAGGATTTATAATTT
AAAACGGGGGCAATGCCTTCGCTTAAAGAATTTATGGATTGCTCGAAACCAAA-TTTTAGGGGATCCTATTACAGTCCTT
TTCTAGATTTTTTTTCTTGTATCTT-------------------------------------------------------
----------------------------GTAATATATAAAAGCTGATAAACCTATTATGTTAGCAGTTAATACTCCCTCC
GTAA-TAAAGAAATATAAGAGTTTTAGTACTACTAATCGCCTCTCTGGAAGTAGGACCCGATTCTCCTGAAAAATATTTT
GCAAGAATTGGAGAATTTTCTCCTCAAACGAAATTACCTCGAAATCAACGGAGGTGAGGCGCGGTGCGGTGCTCCGCAGG
TGAGCTGGAGCCGGACCCCCCCACCGTGTCCGTGACGCGCAGCGCCCGTCGTTGCCGTCCACGTTCAAACGCGCGTCGCC
ACCGCCCCGTTAGCCTCACCCCCCACCCTAATCCCAAAGATTCCAATTTT-CCAATCTAGCCAGTCGCCATCGGAAACCA
TTGGCCGGTCGCCACCCCACGCCGCCGTTGACGACCCCGTCGCGCGCCCAGGCGGCCAATAAACACCGCTCCCGCCCCC-
-C------CGCCCCCCGCCGCGTGCCGCGTCGAAGGGAGCGAGGAGGAGGAGCGAGGAGGATGGTGAGGCTCCCGTACCT
GACCGCGCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCACTTCCGCGACTTCTTCCGCCGGATCCTCG
ACGCCGGCAAATCCAGCAACCTCAAGGTCCGTCCGTTACTTCAGATTCGCCGTCTTCTTCTCCCCCT-GGTGCTGACGCC
GCTCCTGCTGCTGACTCCGCAGGGTTACGCGCCCATTTGCCTGGGGTACGAGGATTTCTACACGCGCCGCCTCTACCTCC
GCATCCAGGTGAGATCTCCTCCCCACTTCGACGATTCGCAGAATTAGAACTTTTTTTCCCTCTAAAGGTGGGCTTGGATC
ATGTGATTCCGAGTTAGTTGACTTGAGTTG-CTAGTGGTGGTGGGCGTGGTAAATTTAGTGCCTGCTTAGGTAGATCACA
TGATGGAGACTTGGAAACTGTCCCAACTGAAAATTCATTTGATCTGTTGTTGCACTTGCTAGCTTTTTTCAGCCTTTTTT
TTCTTTGCCTTTTATGTACA-TACATAAACCCCAATTTTTATGCCAGAACCATGAGATCTCAACTGAAACTTTGGTCCAT
TCGTCTTATTAATAGTTGAATGAAGTGAAAAGGTTGCTTGTTTTGAGCCATCCTGAATGTGTCATTCATTCTTCAGCATT
TTTCTGTGCTATTCCAGTCCCAAGGAACAGAGTAAATAATTATCAGAAAGAACCAATCTTTAGTCTGGGTAGATGTGTGT
GAAACCATATCTCTACAATGCAACCAATCTTTAGTCTGGCA--------------------------------ATAT--G
CACCCTCTGGAATGACATGTTGATCACTTTTTTTGTTTACCTTTCCTTGTTGGGTGGGCAGGACTGTTTTGGCCGACCTA
TTGCCAGTGCGCCCGATGCTTGGTTTGATGTAGTTGAGCGTCACTCAAATGACGGCAACAAGACACTCCAGTATGTTTTC
CTCACATTTGACTCCACACCTAATTAGCATAAGCAAGTGTTATCCCAGGGTGAATGCTAGTCTCTAATTCAGTGCATCTT
TAACGCAGACGTACCACAAAAACATCCAAGTGTCTTAACTTGGGTTCCTACAACTACCTTGGTTTTGCTGCAGCAGATGA
GTACTGCACTCCTCGTGTTATTGAGTCACTCAAGAAATACTCTGCCAGTACTTGCAGTGCCAGAGTTGATGGAGGTAGGT
GCTTATATGTCCATGCCATAGTTTGCCTCAATTTAATACTTCAATAATATGGTGAAACTAACGCTAATTGATCTCTGTAT
AATCTTAGGAAATACTAAGCTGCACACAGAGCTCGAGGAACTAGTTGCACGATTTGTTGGCAAGCCTGCAGCTATTCTTT
TTGGCATGGGTTATGTGACAAACTCTGCGATCATTCCTATTTTGATTGGGAAGGTCTGTGGTGAGCAGAGTATTTTATTT
GTCTTCTCTTTTTCTGTTACATGCTGGACTAATGTATTTTAATGATACCAGGGGGGGCTGATAGTTAGTGATTCACTGAA
CCATATTTCTATAGTGAATGGAGCCAGGGGTTCAGGGGCTACTGTCCGGGTTTTTCAACATAACAGTAAGCTCACTAACA
GCTGCATCTCATGATGTGCACTTAACGATGAGGCAGGAAGTTTAATGTTTCCCTTATTTTCTTCCAGACCCTGCACATCT
GGAAGACGTACTGAGGGAACAGATTGCAGGGGGGCAACCTCGTACACACAGGCCATGGAAGAAGATAATTGTGATTGTTG
AGGGAATTTATAGCATGGAAGGGGAGTTATGCAACCTTCCTGAGATTATGGCTGTCTGCAAGAAATACAAGGTGTGAGAA
TTGCGCATACTGACTCCTTGTTCTGTT-ATCAGTAATGAAAAACTGTAGTTCCTTTGCACGCTATAAGTGTTACTTATGT
CATACATAGTATTCCCTCCGATCCATAATACATGTCGCAGTTTTGAACTAAGGTTGAACTAACCTTAGTTCAAAGTTGAC
ACTTATTTTGGATCGGAGGGAGTACTGCAGTTCACAAGCTGTTCAAAAATTTCAAACTGGTAGTGATGTATCA-------
-GTGTATTGACTTGGAGTTCTTATAAACATCTTAATAGGCCTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTT
GGAAAGACTGGAAGAGGTGTATGTGAACTACTAGGAGTGGATCCAGCTGATGTCGACATCATGATGGGAACATTTACAAA
ATCGTTTGGATCGTGCGGAGGTTATATTGCAGCATCAAAAGTATGAAAGATCCACCTACCAATTCTTGACTGAATGATAT
ATATATTTGATAAATCTGACCCATATGCCATTCTATATTCTTAGGAGATCATTCAACATCTCAAGCACGCATGCCCAGCC
CATATTTATGCAACATCCATGTCGCCTCCAGCAGTCCAGCAGGTCATCTCTGCGATAAAGGTCGTCCTTGGGGAAGATGG
ATCTAACAGAGGTATATCAGGAAGGATTTAATGCTTTTAT-GGCTTCCATGTGTCTCTTGTCTTGGGGAAATTCCTAACG
CAGTCGTTGCTGTAAATAGGGGCCAAGAAACTTGCTCAGATTCGGGAGAACAGCAATTTTTTCCGTTCAGAGCTTCAGAA
AATGGGTTTTGAGGTGCTGGGAGATAATGACTCACCTGTCATGCCTATCATGCTTTACAATCCTGCTAAAATTCCTGCAT
TCTCAAGGGAGTGCTTGAGACAAAATGTGAGTTTTCATATCTAGCGACCATCCATTAGATGCACGTCGTCATCTGTT---
----T-------TTGCATGAGAATTTCTCAAGCAGTTCATGTTTATGTTTTTATTTGGCGAAGTTCTGATTTTCTTTTCG
CTAATGTGGCATGTTCTGTAATTCTAGGTTGCTGTTGTGACTGTTGCATTTCCTGCAACGCCACTACTACTTGCCAGAGC
TAGGATATGTATCTCAGCTTCTCAATCAAGGGAGGATCTAATTAAAGGGTTGGAGGTAAAGTCAACACTCTTGTCAATGC
CCGTACATGCTTTGTTGCGATATTTTCACTTTAATTCCAAATACAGAGTACAATTGATCTGAATCCATGGAATGTGAATG
CATTTGTAGATTATGCGTTGTGTACACAATACATCCCCTGATCATAATTTCATGCAAATTGTTCAGGTTATCAGCAAAGT
TGGTGATCTCATCGGAATCAAGTACTTCCCCGTTGAGCAAGAGAAGGTTGCATCTGTTGACAAACTTAAGAAGCTTGAGT
GAATAGTGACAATGGACAATTGGAAGAATTCTGCTGCTGTTATGCTAGATCTACTGGGTCATCTTGGTAGTGCACCATGC
CTCGGTTTTGCTCTTTTGTGCACCTCAGGACCCTTCATTTTCCTTTGTCTGAAGTGGTTTTGATTTTGTACAGACTGTAT
TATCATCCATCATAGTTTGAAACTTAACACGGCTCTATACACTGTTTTGTCGAATTCAAGAAAAAAGAAATCCCTGTACA
ACCTTGTAAGTGACTGAAATCATGTAGATACTAATTTCCTTCTTATTACTGACTTCCTTTCAAGGCGCAAGATCAGCTGC
ATCGACCATGTCCGAAACCAGCTTGACAAAAAATATTGT---ATCAGTATCTGTCAAATCTAGTTT--GTGACTTGATAC
TGGTGGGTC--TAGTTTCATAAACCTAGTGTCAGAACAGTTGAAACAAAATTGGATCTTAAAATCTCCCAAGTGCTCCAC
ATGAGTGGCTAAGCACCCTTCTAGTGATCAGTGTGTAGGATAATACTGTTGTTTGATCATATTGAATTATCTCAACATGG
CTCCCCATCAGGTGCAGCTGTGTAGGTTTTACAGCTGTGCTTTTTTTCTTTTCTTTTGAGACCTCTCCTTTGAAGTACAG
CTGTAGACTGCTAGACTGTAGTATGGTTTTACAGTTGTGCTGCAAGGACATGAAGATATTATGGTGAACTGGTATGGCAA
GTCAAAAGAGGAACTTGGCCTTTTGCCAAT-GAGAAGAAACTAGTTGGGCCTTGGGCCCTTGGTTAATTTATGGATGTGA
GCAATGTGCATATCAAGGGAGGACAGTCACTCAAGTGAG--CATCATCAGGAGGCAGGTAAGGGAAATGCTGTGCCATGC
TGCTGGGACTGCACAAGCATGTGATTCAATTCAACTGGAGCAACACTGTCTTT---CTGGTCCAATGTGCCTCTGCTTGT
CCTGTTATGTTTTGGCTGCTAGCAAGATCAAGGAAGAGAAGAGAAAATAG
>chr3B_585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TACTACTAGTCGCCTCTCCGGAAGTAGGACTCGATCGTCCTGAAAAATATTTT
GCAATAACCGGAGAATTTTCTGTTGAAACGAAATTACCTGGAAATCAACGGAGGTGAGGCGCGGTGCGGTGCTCCGCGGG
TGAGCTGGAGCCGGACCCCCC-ACCGTGTCCGTGACGCGCTGCGCCCGTCGTCGCCGTCCACGTTCAAACGCGCGTCGCC
ACCGCCCCGTTAGCCTCACCCCCCACCCTAATCCCAAAGATTCCAATTTTTCCAATCTAGCCAGTCGCCATCGGAAACCA
TTGGCCGGTCGCCACCCCACGCCGCCGTTGACGACCCCGTCGCGCGCCCAGGCGGCCAATAAACACCGCTCCCGCCCCCT
CC------CGCCCCCCGCCGCGCGCCGCGTCGAAGGGAGCGAGGAG---GAGCGAGGAGGATGGTGAGGCTCCCGTACCT
GACCGCGCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCACTTCCGCGACTTCTTCCGCCGGATCCTCG
ACGCCGGCAAATCCAGCAACCTCAAGGTCCGTCCGTTACTTCAGATTCGTCCTGTTCTTCTCCCCCCCGGTGCTGACGCT
GCTCCTGCTGTTGACTCCGCAGGGTTACGCGCCCATTTGCCTGGGGTACGAGGATTTCTACACGCGCCGCCTCTACCTCC
GCATCCAGGTGAGATCTCCTCCCCACTTTGACGATTCACAGAATTACAACTTTTTTTTTCTCTGAAGGGGGGCTTGGATC
ATGTAATTCTGACTTAGTTGACTTGAGTTGCCTAGTGGTGGTGGGTGTGGTAAATTTAGTGCCTGCTTAGGTAGATCACA
TGATGGAGACTTGGAAACTGTCCCAACTGAAAATTCATTTGATCTGTTATTGTGCTTGCTAGCTTACTTTATCC-TTTTT
TTCTTTGCCTTTTATGTACA-TACATAAACCCCAATTTTTATGCTAGAACCATGAGATCTCAAGTGAAACTTTGGTCCAT
TTTTCTCATTAATAGGTGAATGAAGTGAAAGGGTTGCTTGTTTTGATCCATGTTGAGTGTGTCATTCATCCTTCAGCATT
TTTCTGTGCTATTCCACTCCAATGTG-CAGAATAAATAGTTATCAGAAAGAACTAATCTTTAGTCTGAATAGATATGTGT
GAAACCATATCTCTGCAATGCGTCCAATGATTTTTTTTATGGAGAGTGATGTGTGGGATGATGCTTCACTATGATAT--G
CACCCTCTGGAATGACATGTTGATCACTTTTTTTGTTTACCTTTCCTTGTTGGGTGGGCAGGACTGTTTTGGCCGACCTA
TTGCCAGTGCGCCCGATGCTTGGTTCGATGTAGTTGAGCGTCACTCAAATGATGGCAACAAGACACTCCAGTATGTTTTC
CTCACATTTGACTACACACCTAATTAGCATAAGCAAATGTTATCCCCGGATGAATGCTAGTCTCTAATTCAGTGCATCTT
TAACGCAGACGTACCACAAAAACATCCAAGTGTCTTAACTTGGGTTCCTACAACTACCTTGGTTTTGCTGCAGCAGATGA
GTACTGCACTCCTCGTGTTATCGAGTCACTCAAGAAATATTCTGCCAGTACTTGCAGTGCCAGAGTTGATGGAGGTAGGT
GCTTATATGTCCATGCCATAGTTTGCCTCAATTTAATACTTCAATAATATGGTGAAACTAATGCTAATTGATCTGT-TAT
AATCTTAGGAAATACTAAGCTGCACACAGAGCTCGAGGAACTAGTTGCACGATTTGTTGGCAAGCCTGCGGCTATTCTTT
TTGGCATGGGTTATGTGACAAATTCTGCGATCATTCCTATTCTGATTGGGAAGGTCTGTGGTGAGCAGAGTATTTTATTT
GTCTTCTTTTTTTCTGATACATGCTGGACTAATGTATTTTAATGATACCAGGGGGGGCTGATAGTTAGTGATTCATTGAA
CCATATTTCTATAGTGAATGGAGCCAGGGGTTCAGGGGCTACTGTCCGGGTTTTTCAACATAACAGTAAGCTCACTAACA
GCTGTATCTCATGTAGTGTGCTTAACGATTAAGCAGGAAGTTTAATGCTTGCCTTATTTTCTTCCAGACCCCGCACATTT
GGAAGACGTACTGAGGGAGCAGATTGCAGGGGGGCAACCTCGTACGCACAGACCATGGAAGAAGATAATTGTGATTGTTG
AGGGAATTTATAGCATGGAAGGGGAGTTATGCAACCTCCCTGAGATTATGGCTGTCTGCAAGAAATACAAGGTGTGAGAA
TTGTGCATACTGATTCCTTGTTCTTTTAATCAGTACTGAAAAACTGTACTTCCTT-GCATGCTTGAAATGTTACTTGTAG
CATATTTATTGAAGTATTGGTGTTCAAAATTTGTGCCTGAAAAACTCA--------------------------------
----------------------------AGTTCACAAGCTGTTCAAAAATTTCAAACTGGTAGAGTGGTAGTGATGTATT
GGTGTATTGACTTGGAGTTCTTATAAACATCTTAACAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTT
GGAAAGACTGGAAGAGGTGTATGCGAACTACTAGGAGTGGATCCAGCTGATGTGGACATCATGATGGGAACATTTACAAA
ATCATTCGGATCGTGTGGAGGTTATATTGCAGCATCAAAAGTATGAAAGGGCCACCTACCAATTCTTGACTGAACGT---
-TATATTTGATAAATCTGACCCATATGCCATTCTATATTCTTAGGAGATCATTCACCATCTCAAGCACGCATGCCCAGCC
CATATTTATGCAACATCCATGTCCCCTCCAGCAGTCCAGCAGGTCATCTCTGCGATAAAGGTTGTCCTTGGGGAAGATGG
ATCTAACAGAGGTATATCAGGAAGGACTTAATGCTTTTTAGGGCTTCCACGTGTCTCTTGTCTTGGGGAAATTCCTAACG
CAGTTGTTGCTGTAAATAGGGGCCAAGAAACTTGCTCAGATTCGGGAGAACAGCAATTTTTTCCGTTCAGAGCTTCAGAA
AATGGGTTTTGAGGTGCTGGGAGATAATGACTCACCTGTCATGCCTATCATGCTTTACAATCCTGCTAAAATTCCTGCAT
TCTCAAGGGAGTGCTTGAGACAAAATGTGAGTGTTCATATGTAGCGATGATCCATTAGATGCACGTCGTCATCTGTT---
----TATTACATTTGCATGAGAATTTCTCAAGCAGTTCATGTTTATGTTTTTATTTGGTGAAGTTCTTATTTTCTTTTCG
CTAATGTGGCATGTTCTGTAATTCTAGGTTGCTGTTGTGACTGTTGCATTTCCTGCAACGCCACTACTACTTGCCAGAGC
TAGGATATGTATCTCAGCTTCTCAATCAAGGGAGGATCTAATTAAAGGGTTGGAGGTAAAGTCAACACTCTTGTCAATGC
CCCTACATGCTTTGTTGCGACATTTTCACTTTAATTCCAAATACAGAGTACGATTGATCTGAATCCATGGAATGTGAATG
CATTTGTAGATTATGCGTTGTGTACACAATACACCCCCTGATCATAATTTCATGCAAATTGTTCAGGTTATCAGCAAAGT
TGGTGATCTCATCGGAATCAAGTACTTCCCCGTTGAGCAAGAGAAGGTTGCATCTGTTGACAAACTTAAGAAGCTTGAGT
GAATAGTGACAATGGACAATTGGAAGAATTCTGCTGCTGTTATGCTAGATCTACTGGGTCATCTTGGTAGTGCACCTTGC
CTTGGTTTTGCTCTTTTGTGCACCTCAGGACCCTTCATTTTCCTTTGTCTGAAGTGGTTTTGATTTTGTACAGACTGTAT
TATCATCCATCATAGTTTGAAACTTAACACGGCTCTATACACTGTTTTGTCGAATTCAAGAAGAAAGAAATCCCTGTACA
ACCTTGTAAGTGACTGAAATCATGTAGATACTAATTCCCTTCTTATTACTGACTTCCTTTCAAGGCGCAAGATTAGTTGC
ATCGACCATGTCAGAAACCAGCTTGACAAAAAATGTCTGAGAATCAGTATCTGTCAAATCTAGTTTATGTGACTTGATAC
TGGCGGGTCTATAGTTTCATAAACCTAGTGTCAGAACAGTTAAAACAAAATTGGATCTTAAAATT--CCAAGTGCTCCGC
GTGTATGGTTAAACACCCTTCTAGTGATCAGTGTGTAGGATAGTACTGTTGTTTGATCATATTGAATTATCTCAACATGG
CTCCCCGTCAGGTGCAGCTCTGTAGGTTTTACAGCTGCGCTTTTTCT-TCTTCTTTTGAGACCTCTCCTTTGAAATACAA
CTGTAGACTGCTAGAATGTAGTATGGTTTTACAGTTGTGCTGCAAGGACATGAAGATATAATGATGAACTGGTATGGCAA
GTCAAAAAAGGAAGTTGGCCTTTTGCCAACCGAGAAGAAACTAGTTGGGCCTTGGGCCCTTGGTTAATTTATGGATGCGA
GCAATGTGCATATCAAGGGAGGACAGTCACTCAAGTGCTAGCATCATTGGGAGGCAGGTAAGGGAAATGCTGTGCCATGC
TGCTGGGATTGCACAAGCATGTGATTCAATTCAACTGGAGCAACACTGTCTTTCTGCTGGTCCAATGTGCCTCTGCTTGT
CTTGTTATGTTTTGGCTGCTAGCAAGATCAAGGAAGAGAAGAGAAAAGAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------S------------------S--S-----------------------S------------S------S-S---
------S-----------------------S------------S------------------------------------
---------------------S--------S-------------S-------SS--------------------S-SS--
S-SS-SS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S-----------------------
----S----------------S--------------------------------------S-------------------
-----------------------------------------------------------S--------S-----------
----------S-----------------S--S------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SSSSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S--------------S------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------------------S-------------------------------
------S------S------------------------------------------------------------S-----
-------------------------------------------------------------S------------------
-------------------------------------------------------------------S---------SS-
-------S-------------S-------S--------------------------------------------------
-------------------------------------------------------------------S-----------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S----------------S---------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------S--S--------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------------------------------------------------S---------
------------------------------SS----------------------------------S-------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------------S--S------SSS
SSSS----------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------------S-------
-----------------------------------S----------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-------------------------------------S----------S-------------------------------
----------------S---------------------------------------------------------------
----S----------------------------------S----------------------------------------
----------------------------------------------------S---------------------------
----S---------------------------------------------------------------------------
--------------------------------------S-S---------------------------------------
---------------------------------------------------SS---------------------------
--------------------------------------------------
>forward_25
-----TTCCCGCGGAATAAACCCTC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1838
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GTG
CACCCTCAGGAATGACA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_37
-----------------AAACCCTCGCAATTCCGGAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>reverse_1839
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TG
CACCCTCAGGAATGACAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_38
------------------AACCCTCGCAATTCCGGAAG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>reverse_2000
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
CTCACATTTGACTCCACACCT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CGGTGCCTCCCC
AAAGAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>reverse_2287
--------------------------------------------------------------------------------
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----------------------------------------------GTATGGTGAAACTAACGCTAATTGA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_2270
--------------------------------------------------------------------------------
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----------CCATGCCATAGTTTGCCTCC--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>reverse_3983
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------GCTACTACTTGCCAGAGC
TAGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>forward_3070
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------GATCGGAGGGAGTACTGCAC--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>reverse_5045
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----GAAGAGGAACTTGGCCTTTTGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
