>input_sequence_78678
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-ATGGCTTCCCAGCTCTCCGCCATGACCACCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGG
CCACGCTGCCGTCCTTGAGGAGGAAGAGGTCTCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGA
TCACACGCA---TACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTAC--TATG
CGGATGCAGATCATGGTGACGACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAA
GGCGACGGCGGGGCTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACA
CGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTAGACCAG
ATCATCGGCTAG--------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G253200
CTCACTTCTCAGGATAGAGGCGTGAAAACATGATATACCTGACAATGTAAATCAATCAGGAACGTATGTTGTTCAATACC
GGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATGTAC
ATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCAT-GCCGTGCTGTTATAATATCAGGTC
ATGTTGTTGATGATCAATCATTC-TCATTATCACAGTGATGCCAGGATGGGTATTCAGTGTGGA-----GTACTACCGTC
ATGGT---GTATGTGACCTTACAACTTTGGAAGATGCATCACAC--TTTATTTTCATTGGCAAATTCGTGCATGCCACGT
AAAACCAAGA-TTTTTTGTTTTGAATTTGCAGGTTGCAAATATA------------------------------------
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---------------------------------------------------------------GTTATTTATTTATTTAA
CAGCAACGAAAAGAGCTA--------------------------------------------------------------
---------------------------TATTATTTTACTGAACCGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCA
GCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACGGTGGTGTTTCTTATCCGAACTGGCAGGCACTCCCTAACCAGG
GGGCGCCACGTCGGTGGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCC
GCTCCACAAGATTTAAGAAAGGAACTCGTTGAGCATTGCACCTGAGCAATCGCAGCATCCACAACACACGAATCCGCAGC
CATGGCTTCCCAGCTCTCCGCCATGACCACCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGG
CCACGCTGCCGTCCTTGAGGAGGAAGAGGTCTCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGA
TCACACGCA---TACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTAC--TATG
CGGATGCAGATCATGGTGACGACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAA
GGCGACGGCGGGGCTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACA
CGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTAGACCAG
ATCATCGGCTAGAACCTTCCTTTTCCGTCGATAGCTGTTCTGCATCCACATCGCGCGCTCCATGTAGTGGATCAATTAAT
GCTCCCTTTGTGATTTGATGATGTGGTGTAGTACAATGTATGT----GTATGCATCTTTGGTTCAGCGGGACGTACCGCC
GCGCCGGTGTGGCAACTGCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACACGGTGAAGATCGTCTTGTGC
TATAGAAAGAGCAACATAGAGTCCAAAAACTAAATTAGTACTCCCTCCGTGAAGAAATATAAGATCGTTTAGATTA----
---------CTACTTAGATCAGTTAGTGATCT---------------TCTTTACAGAGAGAGTAACAATAAAAGCGCAAA
ATAACCTGCGTCGCCTCCTCTCACGGCTCGAGGGAGAAACCAGCGACGCCTCCTCTTCCACCCCCCTCCCCTTCCTCCCC
CCGCCGCCACCAGAGGTGTTGCCGACGAATCTCGGCTGACTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGTGGCTG
CTTCCCGGAGGGGTCG-CCTCGGTGCGGCGTCGTCGACCGGCGTTAGAGTTGTGCCGAATATTATGTACGAGGTAGTTTA
TAGTTAGACTCTGTGTCGTACATCGTGTAGACAGGGTATGTCGTGGTGCCCTAGTAGGACTCTTGTATCCTATAGACACA
CGA-----------------------------------------------------------------------------
-------AGTAACAACCTATGCCAACATAACATGACATACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATG
GAGAGGAGCATCCATAGTCAGGCTCAGGGATGTAGCCGATATTCGGTGAACCTCATTAGCAAATCTCCGTGTCGTGCCTC
GTGTGATTTGCTTAGTTATCAGTGGATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGCTCGT
AGATTATTGATCTAGAGGAAGGGTGCCAATTTCGTATGGTTCACTTGGAAGCAGGAGAGAAGTGAGGGAAATATGCCCTA
GAGGCAATA
>chr2A_1
CTCACTTCTCAGGATAGAGGCATGAAAACATGATATATCTGAGAATGTACGTCAATCAGGAACGTATGTTGTTCAATACC
GGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGTCAGCTTGTTTGATCCTTTTGTTCTTCT
---AAAGAACCAACACACAAGAGCTAGTGGCCCTTGTGACTCTG-TTTTTTTTACATGTCTC------------------
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---------------------------------------------------------------------ATGAAATGTAT
ATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCAT-GCCATGCCGTCATAATATCAGGTC
ATATTGTTGATGATCAATCATTCCTCTTTATCGTAGTGATGTCAGGATTGGTATTCGGTGTGCTCTGAGGTACTACCGTC
ATGGT---GTATGTGACATTACGACT-TGGAAGACGCATCACACACTTTATTTTCATTGGCAAATTCGTGTGTGCCACGT
AAAACCAAGTTTTTTTTGTTTTGAATTTGCAGGTTGCAAATATACTCCCTTCGGTCCTTTTTACTCCGCATATTAGAGTT
GTGTCAAGTCAAATTTTGTAAACTTTGACTAAATTTATATTAAAAAATAACAACATCTACAATACCAAATATATATACCA
TGAAACTACATTTCATAATGAATCCAATAATATTAATTTGACATTGTGAATGTTGATACTTTTTTCTATAAATTTAGTTA
AAATAGACATGCTTTGACTTTGAATAAAACTTATATACAGACTAAAAAGGATCGGAGGAAGTAGTTATTTATTTATTTAA
CAGTAACGAAAAGAGCTA--------------------------------------------------------------
----------------------------ATTATTTTACTGAACCGTTTCATGCCGGTGATGC-------------CGTCA
GCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACGGTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGG
GGGCGCCACGTCGGTGGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCG
GCTCCACAAGATTTAAGAAAGGAGCTCGTTGAGCATTGCACCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGC
CATGGCCTCCCAGCTCTCCGCCATGACCTCCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATAG
CCACGCTGCCGTCCTT---GAGGAAGAGGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGA
TCACACACATAGTACTACGTATACATGCGAATGGGTCAGGCATTGATTGTTTATTTGGTTAAAATAATTACTACTATACG
CGGATGCAGATCATGGTGACGACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAA
GGCTACGGCGGGGCTCAAGTTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACA
CGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAG
ATCATCGGCTAGAACCTTCCTTTTCCGTCCATAGCTGTTCTGCATTCGCATCGCGCGCTCCATGTAGTGGATCAATTAAT
GCTCCCTTCGTGATTTGATCATGTGGTGTAGTACAATGTATGT----GTATGCATCTTTGTTTCAGCGGGACGTACCGCC
GCGCCGGTGTGGCAACTCCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACATGGTGAAGATCGTCCTGTGC
TATAGAAAGAACAACATAGAGTCCAAAAACTAAATAAGTACTCCCTCTGTGAAGGAATATAAAATTGTTTAAATCA----
---------CTACTTAGACCAGTTAATGATCTAAACGATCTTATATTTCTT--CACAGAGAGTAACAATAAAAGTGCAAA
ACAACTCGTGTCGCCCCCTCTCACGGCTTGA-GGAGAAACCAGCGACGCCTCCTCTTCCACCCC--TCCCCTTTCTCCTC
CCGCCGTCACCAGAGGTGCCGCCGCCGAAGCTCGGCTGGCTTTGAGGAGCTTCTTTGGCCGTGTGGCGTGGTAGTGGCTG
CTACCCGGAGGGGTCG-CTCGGTGCGGGTGTCGTCGGCTGGTGTTAGAGTTGTGCTGAATATTGTGTACAAGGTAGGTTA
TAGTTAGACTCTGCGTCGTATGGTGTGTAGACAGAGTATGTTGTGGTGTCATAGTAGGACTTTTGTATCTTATAGACACA
CGA-----------------------------------------------------------------------------
-------AGTAACAACCTATGCCAACATAACAGGACATACATGCAGGGGAGCTGGTGTGTGGTATTGTAGCGGTATCATG
GAGATGAGCATCCATAGTCAGGCTCAGGGATGTAGCCGATGTTCGGTGAACCTTGTTAGCAAATCTCACTGTCGTGCCTC
GTGTGA-TTGCTTAGTCATCAGTGGATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGGTCGC
AGATTGTTGATCTAGAGGAACGGTGCCAATCTTGTATGGTTCGCTTGGAAGCAGGAGAGAAG------------------
---------
>chr2B_1
CTCACTTCTCAGGATAGAGGCGTGAAAACATGATATACCTGACAATGTAAATCAATCAGGAACGTATGTTGTTCAATACC
GGTGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGCCAGCTTGTGTGATCCTTTTGTTCTTCT
TCTAAAGAACCAACACATAAGAGCTAGTGGCCCTTGTGACTCTGTTTTTTTTTACATTTCTC------------------
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---------------------------------------------------------------------ATGAAATGTAC
ATAGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAATTACAGCTTGCGCATGGCCATGCCGTCATAATATCAGGTC
ATATTATTGATGATCAATCATTCCTCTTTATCACAGTGATGTCAGGATTGGTATTCAGTGTGCTCTGAGGTACTACCGTC
ATGGTTGTGTATGTGACCTTACAACT-TGGAAGATGCGTCACACACTTTAGTTTCATTGGCAAATTCGTGCGTGCCACGT
AAAACCAAGTT-TTTTTGTTTTGGATTTGCAGGTTGCAAATATAGTTATTTATTTACTCCCCCGTCCTAAAATTC-----
-------------TTGTCTTAAATTTGTCTAAATACGGATATATCAAGTCATGTTTTAGTATTAGATACATCCGTATCTA
GACGAATTCAAGACAAGAATTTTGGAACGGGGGGAG--------------------------------------------
-------------------------------------------------------------------------TATTTAA
CAGCAACGAAAAGAGCTACTCCCTTCTTTTCATAATATAAGAGCGTTTTTGACACTACACTAGTGTTAAAATATAAAAAG
CGCTCTTATAGTATGGGACGGAGGGAGTATTATTTTACTGAACTGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCA
GCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACGGTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGG
GGGCGCCACGTCGGTTGCAAGGATCCGAAACCTATCCTCGAGTGGCCGCCGTTCACCACGCGATTCCCCGTGTGGCTCCC
GCTCCACAAGATTTAAGAAAGGAGCTCGTTCAGCATTGCGCCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGC
CATGGCTTCCCAGCTCTCCGCCATGACCTCCGTGCCGCAGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGG
CGACGCTGCCGTCCTT---GAGGAAGAGGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAATATCGTAAGA
TCACACACA---TACTACGTATACATGCGAATGAGTCAGGCATTGATTGTTTGGTTCGTTGACATAATTACTACCATATG
CGGATGCAGATCATGGTGACCACGACGACCCTGATGCTGTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAA
GGCGACGGCGGGGCTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGCTTCACTCTCGCCGACA
CGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTCGGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAG
ATCATCGGCTAGAACCTTCCTTTTCCGTCGATAGCTGTTCTGCATCCGCATCGCGCGCTCCATGTAGTGGATCAATTAAT
GCTCCCTTTGTGATTTGATGATGTGGTGTAGTACAATGTATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCGCC
GCGCCGGTGTGGCAACTGCTTCATCCCATGCGTTTTTCATCATCTATAGTATCTTTCACATGGTGAAGATCGACTTGTGC
TATAGAAAGAGCAACATAAAGTCCAAAAACTAAATTAGTACTCCCACTGTGAAGAAATATAAGATCGTTTACATCAGTAA
TTGATCTCACTACTTAGATCAGTTAGTGATCTAAACTATCTTATATTTCTTTATAGAGAGAGTAACAATAAAAGCGCAAA
ATAACCCGCGTAGCCTCCTCTCACGGCTCGA-GGCC-------------------------------CCCCTTCCTCACC
CCGCCGCCACCA-AGGTGCCGCCGACGAAGCTCGACTGGCTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGCGGCTG
CTTCCCTAAGGGGTCGCCTCGGTGCGGGCGTCGTCGGCTGGCGTTAGAGTCGTGC---ATATTGTGTACAAGGTAGGTTA
TAGTTAGACTCTGCATGGTACGATGTGTAGACAGGGTATGTTGTGGTGTCCTAGTAGGACTCTTGTATCCTATAAATAGA
CGAAGTACTCCCTCTGTTCCATATTACTCGTCGCTGATTTAGTACAACTTTGTACTAAATCAGTGACGAGTTATATGGAA
CGGAGGGAGTAACAACCTATGCCAACATAACAGGACATACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATG
GAGAGGAGCATCCATAGTCAAGCCCAGGAATTTAGCCGATGTTCGGTGAACCTCGTTAGCAAATCTAAGTGCCGTGTCTC
GTGTGA-TTGCTTAGTCATCAGTGAATCGCCTCAAATTATTCTAACAAGTGGTATCATGAGTAAGTTTCAAGGAGGTCGT
-GATTGTAGATCTAGAGGAAGGGTGCCAATTTCGTATGGTTCGCTTGGAAGCAGGAGAGGAG------------------
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>SNPs
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----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-----------------------------------------------------------S---S--S-------------
--S-----------------------S--------------S------S-------------SS----------------
--------------------------S--------------------------------------------S--------
---------S----------------------------------------------------------------------
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---------------------------------------------S----------------------------------
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-----------------------S---------------------------------------S-----S----------
----------------------------S---------------------------------------------------
----------------SSS------------S------------------------------------------------
------S-------------------------------------------------------------------------
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-------------------------------------------------------------------------S------
-----------------------------------------------S--------------------------------
------------------------------------------------------------S-------------------
------------------------------------------------------------S-------------------
-----------------------------------------------S-----------------------S--S-----
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------S------------------------S--------------------------------SS--------------
------------------SS---------S--------S-----------------------------------------
------------------SSS-SSSS----------S-S----------------S-------S-----S------S---
-------------S-------SSS-----------------S------S-------------------------------
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--------------------------------S-----------------------------------------------
----------------------------------------S-------------S------------S------------
------S---------S----------------------------------------------------------S----
-----S------------------------------------S-------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_1344
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--------------------------------------------AGCAATCGCAGCATCCACAA----------------
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>reverse_2350
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-----------------------------TCTCGGCTGACTTTGAGGAG-------------------------------
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