>input_sequence_78643
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-ATGGGTGCCCACCCGTATTCTCCTCCCCAGTTCTATATCCCTTTGCCCCAGCTAGCTACTTCCAT--------CTGCCT
CTTCCTGCTCAGAGAGCGAGGTACCATCTT-GTTTCTGTTATCCATGTCCAGTATCACTTTGTCCAGCCGT----TGCCG
GTAGAATTCAGCTACTTCAGCAACTGGCAACTTGCTTATTTTTTGCCTTTCTTGCAGGGAATTTCATCTGTGCGAAGAGG
GATCGATCGATGGTGATGATGGGGCAGCTGGGGAGGCTCGTGGACGGGCTGAGGTCCAAGATGCGGGCCGGCGGCG---G
TGGGAAGAAGGGGGCGGGGAAGAAGGCAGCGGCAGCGTCGGCGTACGAGCAGATGGGCAAGACGGAGAGCATGAGGGTGG
AGATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATAG---GCCGCAGGAGCAGG
AACAAGCGCTTCTTCCTCGCCTTCTAG-----------------------------------------------------
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>chr2B_1_TraesCS2B01G539100
CCCGTAACGCCCGTGAGCCATCAAACCGGGGCCCCATGTGGCTCCACCAACACCGTTAGCGTGTTGGCAGTGGGTGGGTT
CTAGCTAAAAACTAAAAACAACGACGTATGTGAAGAGAATCAAATACATCAAATGGTAAAGATACATAGTAGGTGTCAGC
GTGTGTTGGCTGAAAGGACTCCGATAATTTTTTTACCAGTGCCCTAAAAAAGTGTTCCACGAAACACTGCTATATATATG
GTGCTCCTGTGATGTGACCATATCTTACAAGGTTGTTCAAAGAAGCTGTTGCAGACGTAGGCAAATTTGCATGCT-----
--TAAAGATGTATACGTATGAATGAC-------TCGATTGTAATCAAACTTCAGA-----GAAAGAAACAACAGGAAGTT
GACAAATGGCGCGCACGTACCGTACCGTTGCGAGTAGGCGCCACATACAAGGGTCCGAGCACACTTGTCCAAGGACGGCT
AACATCATCCACAGCCCACAAGCGTCTGCATCCTCCTGTTTTGACCCGCCACACGG------------CATCCAATCAAC
CCATCCCAATTTCAAACCGCAGAGAAAATAATGGGCGGGCGTCACTTTCTCGTGCAGAGAGAAATCAACCGATCCTCGCA
GATTTGCCTGGATACCAAAGAAGCCATGGAGCTGCCGTTCATCGGTTGATCTCTCAACTCAAGTCTGAACGCTGCATACG
CCTCACACCGGCCGGCACAGTGCGTGGTTGCGACGGTACTACGTGGTTATAGCGCTTTGTAGGGCTGGTGAAGCAGCTAG
CTGCACCATCCATATTCCCTACGCAATCCAAGATATTATTCCTCGCGCCGATTTCATTTCCCATTGATCAGTGGTCATTA
TTCATCTCGTCAACTCAACGGCCGGTGTGTGTTTGTGTCTGTCTGTCCGTCT-------TTTCCCTCCAATCAAGAGCTA
GAGCCATTTCAGGTCGTTTTCTATGACTACGTCGCC---CCGCCGGCTTTTCCGTTGCATGGTTCTATATATGTAACCAC
CATGGGTGCCCACCCGTATTCTCCTCCCCAGTTCTATATCCCTTTGCCCCAGCTAGCTACTTCCAT--------CTGCCT
CTTCCTGCTCAGAGAGCGAGGTACCATCTT-GTTTCTGTTATCCATGTCCAGTATCACTTTGTCCAGCCGT----TGCCG
GTAGAATTCAGCTACTTCAGCAACTGGCAACTTGCTTATTTTTTGCCTTTCTTGCAGGGAATTTCATCTGTGCGAAGAGG
GATCGATCGATGGTGATGATGGGGCAGCTGGGGAGGCTCGTGGACGGGCTGAGGTCCAAGATGCGGGCCGGCGGCG---G
TGGGAAGAAGGGGGCGGGGAAGAAGGCAGCGGCAGCGTCGGCGTACGAGCAGATGGGCAAGACGGAGAGCATGAGGGTGG
AGATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATAG---GCCGCAGGAGCAGG
AACAAGCGCTTCTTCCTCGCCTTCTAGCTGTCAGCGTTCTTCAAAAGGAGGAGCTGTGTCCTGTTCTAACATGTGAGCTT
TAGATAGTACAGTACGTACCGTTGCGTAGTGAATGTAAAGAAACCTCAAGAAAGCAACCGCATACAGCGGGAAGCTCTCT
GTTACCACCTGTAACCACACATGCAGTACTAT---CTGTCTCATCCGTGAACTTGCTACTTAGCAATCCTGATATTAGAA
GTGACGCGAAT---------------------------------------------------------------------
----------------------------CACGAATTACAAATAGCTGAAAAAGCTTTATTGCTATCTTTAGAGGTAATTC
ACATTGATGTGATGAAAGCGAAGGACCCACAACAATGATAGAACACCCCGAGTAATCAACCTGTTTCCCAAGCAGAGTCT
CGCGGAACCTTTCCTCTTGACCTTCCTTTTGGTTCGCACAA---AAAAAATGATAAGAAAATAAGGGATTATTTCAACA-
---TATACAAAAGTCACTTCTTCAGAAATGCTTGTCGAAGAAATGAATGTATCTA-ACCTATTTTAGTTCTAGATACATC
TA-TTTTATCAAGTACATGCTATATAAT----TAAGTTGTTTCGGTCATATAAGATGACTTTATGGACTCCCTTAAAACT
GGATTTCGCCCCGCTTTATATAAAGCAACAATCGAAAAAGTACACGGCTGA-CGATACGAGATGATGAGGTAGCCCTCAT
ACAAC----ATCCCAAAATAACCGGAGCACACAGAACGCAAGCGACCATGCTACCAAAAGAGTACAAATGAAGACAAAGT
ACAACGAGACGCTACGCCCTATAACACCTAAGCTCCATGACAACACCCACATGACGGAGAATTGTGTTGAGCGTCACTGT
TGCCGAGTCCAGGACGGACAAGGGTCTTCACCCGGAGCCCTGACACGAAAAGGGGCACCACGACAACGTCATTGAGAAGA
GAGTGTCGTCCACGAGTGTCGTTGTCGCCGGCGACAAAGCTCAGAGCTTTTGCTCGGTAGCTCCCCCGTGAGACCATGAG
GTTTCCAGAACAAGCACGACGAGAC
>chr2A_273
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--------------------------------TTGTTCATAGAAGCTGATGCAGACGTAGGTAATTTTTTTTTTTTGCAT
ACTTAAAATGTACACGTATCAACGACTCGATTGTCGATTGTAATCAAACTTCAGATCGGAGAAAGAAACAGCAGGAAGTT
GACAAATGGCGCGCACGTACCATACCCTTGCGAGTAGGCGCCACATACAAGGGCCCGAGCACACTTGTCCAAGGACGGCC
AACATCATCCACAGT-CACAGGCGTCTGCATCCTCCTGTTTTGACCCGCCACACGGCATCCTCGCTCCCATCCAATCAAC
CCCTCCCATTTTCAAACCGAAGAGAAAATAATGGCCGCGCGTCACTGTCTCGTGCAGAGAGAGATCAACCGATCCTCGCA
GATTTGCCTGGATACCAAAGAAGCCATCGAGCTGCCGTTCATCGGCTGATCTCTCC---CAAGTCTGAACGCTGCATACG
CCTCACACCGGCCGGCACAGTGCGTGGTTGCGACGGTACGACGTGGTTATAGCGCTTTGTAGGGCTGGTGAAGCGGCTAG
CTGCACCATCCATATTCCCTACGCAATCCAGGATATTATTCCTCGCGCCGGTTTCATTTCCCATTGATCAGTGGTCATTA
TTCATCTCGTCAACTCAACGGCCGGTGTGTGTTTGTGTCTGTCTGCCCGTCT-------TTTCCCTCCAATCAAGAGCTA
GAGCCATTTCAGGTCGTTTTCTGTGACTACGTCGCC---TCGCCGGCTTTCCCGTTGCATGGTTCTATATATGTAACCAC
CACGGGTGCCCACCTATGTTCTCCTCTCCAGTTCTATATCCCTTTGCGCCAGCTA----CTTTGATTTGATCTGCTGCCT
CTTCCTGCTCAGAT----AGGTACCATCTT-GTTTCTGTTATCCATGTCTAGTACCAGCTTGTCCCGCCGT----TGCCG
GTAGAATTCAGCTAGTTCAGCAACTGGCAACTTGTTTATTTTTCGTTTTTCTTGTAGGGAATCATACCTGTGCGAAGGAG
GATCCGTCGATGGTGATGATGGGGCAGCTGGGGAGGCTGGTGGACGGGCTGAGGTCCAAGATGAGGGCCGGCGGCG---G
---GAAGAAGGGGGCGGGGAAGAAGGCGGCGGCGGCGGCGGCGTACGAGCAGATGGGGAAGACGGAGAGCATGAGGGTGG
AGATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATAG---GCCGCAGGAGCAGG
AACAAGCGCTTCTTCCTCGCCTTCTAGCTGCCGGCGTTCTTCAGAAGGAAGAGCTGTGTCCTGTCCTAACATGTGAGCTT
TAGACAGTACAGTACGTACCGTTGCGTAGCGAATGTAAAGAAACCTCAGGAAAGCAACCGCATACAGCGGGAAGCTCTCT
GTTACCACCTGTAACCACACATGCAGTACTAT---CTGTCTCACCCGTGAACTTGCCACTTAGCAATCCTGACATTAGAA
GCGACGCGTTTTGTGATTAAATCACGAATTACAGTCTCTGAACTGTGTAAGAAGGACCTAGGTCCTGACTGATGAAATAA
ATATCCCTTCCACCCGCAAAGAAAAAAACACGAATAACAAATAGCTGAAAAAGCTTTATTGCTATCTTTAAATGTAATTC
ACGTTGATGTAATGAAAGCGAATGACCCATAACAATGACAGAACGCCCCGAGTAATTGACCTGTTTCCCAAGCAGAGTGT
TGTGAAACCTTTCCTCTTTACTTTCCTTTTGGTTTGCACAACCCAAAAAATGATT--AAAAAAAGGGATTGTATCAACAA
TTATATACACAAGTTCCTCCGTCCGAAAATATTTGTTGAAAAATGGATGTTTCTA-------------------------
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>chr2D_273
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--------------------------------TTGTTCAAAGAAGCTGATGCAGACGTAGGTAA--TTTTTTTTTTGCAT
ACTTAAAATGTACACGTATCAATGACTCGATTGTCGATTGTAATCAAACTTCAGATCAGAGAAAGAAACGGCAGGAAGTT
GACAAATGGCGCGCACGTACCATACCCTTGCGAGTAGGCGCCACATACAAGGGTCCGAGCACACTTGTCCAAGGACGGCC
AACATCATCCACAGCCCACAAGCGTCTGCATCCTCCTGTTTTGACCCGCCACACGGCATCCTCGCTCCCATCCAATCAAC
CCGTCCCAATTTCAAACCGAAGAGAAAATAATGGCCGCGCGTCACTGTCTCGTGCAGAGAGAGATCAACCGATCCTCGCA
GATTTGCCTGGATACCAAAGAAGCCATCGAGCTGCCGCTCATCGGCTGATCTCTCG---CAAGTCTGAACGCTGCATACG
CCTCGCACCGGCCGGCACAGTGCGTGGTTGCGACGGTACGACGTGGTTATAGCGCTTTGTAGGGCTGGTGAAGCAGCTAG
CTGCACCATCCATATTCCCTACGCAATCCAGGATATTATTCCTGGCGCCGATTTCATTTCCCATTGATCAGTGGTCATTA
TTCATCTCGTCAACTCAACGGCCGGTGTGTGTTTGTGTCTGTCTGTCCGTCT-------TTTCCCTCCAATCAAGAGCTA
GAGCCATTTCAGGTCGTTTTCTATGACTACGTCGCC---CCGCCGGCTTTTCCGTTGCATGGTTCTATATATGTAACCAC
CACTGGTGCCCACCCGTATTCTCCTCTCCAGTTCTATATCCCTTTGCGCCAGCTA----CTTTGAT--------CTGCCT
CTTCCTGCTCAGAT----AGGTACCATCTT-GTTTCTGTT----------------------------------------
-TAGAATTCAGCTAGTTCAGCTACTGGCAACTTGCTTATTTTTTGCCTTTCTTGCAGGGAATTTAACCTGTGCGAAGGAA
CATCGATCGATGGTGATGATGGGGCAGCTGGGGAGGCTGGTGGACGGGCTGAGGTCCAAGATGCGGGCCGGCAGCGGCGG
---GAAGAAGGGGACGGGGAAGAAGGCGGCGGGGGCGGCGGCCTACGAGCAGATGGGCAAGACGGAGAGCATGAGGGTGG
AAATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGATTCCATAG---GCCGCAGGAGCAGG
AACAAGCGCTTCTTCCTCGCCTTCTAGCTGTCGCCGTTCTTCAAAAGGAAGAGCTATGTCCTGTTCTAACATGTGAGCTT
TAGAT-----AGTACGTACCGTTGCGTAGTGAATGTAAAGAAACCTCAAGAAAGCAACCGCATACAGCGGGAAGCTCTCT
GTTACCACCTGTAACCACACATGCAGTACTATGATCTGTCTTACCCGTGAACTTGCCACTTAGCAATCTTGACATTAGAA
GTGACGCCTTTCGTGATTAAATCATGAATTACA-----------------------------------------------
---------------------------------------AACAGCTGAAAAATCTGTATTGCTATCTTTAGAGGTAATTC
ATATTGATGTGATGAAAGTGAAGGACCCACAACAATGACAG--CACCCCGAGTAATCCACCTGTTTCCCAAGCAGAGTCT
CGTGAAACCTTTCCTCTTTACCTTCCTTTTGGTTCGCATAACCAAAAAATTGA-T--AAAAAAAGGAATTATTTCAACAA
TTATATACAAAAGTCC------CAAAAATACTTATCGGAAAAATGGATGTATCTAGACTTATTTTAGTTCTAGATACATA
TATTTTTATCAAGTACAGGCTATATATAATTATAAGTTGTTTCAGTCGTACGAAATGACTTTATGGACTCTCTCAAAACT
GGATTTCGCCCTACTTTATATAAAGGAACAACCGAAAAATTACCCGGCTTGCCGATACGAGATGGTGAGGTAGCCCTCAT
ACAACGCCGATCCCAGAATAACCGGAGCACACAGAGCACAAGCGACCACGGTACCGAAAGAGTACAAATGAAGACGGAGT
ACAACGACACGCTACGCCCTATAACAGCTAAGCTCCATGACAACACCCTCAGGACGGAGAACGGTGTTAAGCATCACCGC
TGCCGAGTCCAGGATGGACAAGGGTCTTCACCCGGAGCCCTGACATGAAAAGGAGCACCACGACAACGTCATTGGGAAGA
GAGTGTCGTC-ACGAGTGGCATTGTCGTCAAGGACAAAGCTCGAAGCTTTTGCTCGGCAGCTCCCCCGTGCGACCATGAG
GTTTCCAGGACAAGCGTGACGAGAC
>chr2D_875
TGTCT---------------------------------------------------------------------------
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------------------------------------GTTTGTCTGTCCGTTTGTCTGTCTTTCCCTCCAATCAAGAGCTA
GAGCCATTTCAGGTCATTTTCTATTGCTACGTCACCAACTCGCCGGCTTTTCCGTTGCATGGTTCTATT----TAACCAC
CACGGATACCCACCTGTATTCTCCTCCTCACTTCTGTATGCTTCGTG------------CTTTCAT--------CTGCCT
CTTCCTGCTCAGGT----ATCTAGCTTGCTCGTTTCTGGTATCCATGTCCAACATGTGTTTGTCGCGCCGTCGGCTGCCG
GTGGAATTCAGCTAAT---------------TTGCTTATTTTTTGTACGTGC-GTAGAGTTTTTCGTCCGGGGGAAGGGG
GATCCATCCATGGTGATGATGGGGCAGCTGGGGAAGCTGGTGGACGGGCTCAGGTCCAAGATGCGGGCCGGTGGCGGCGG
---GAAGAAGAA---------------GGCGGCGGCGGCGGCATACCAGCAGATGGGCAAGACGGACAGCATGAGGGTGG
AGATCAAGAGCCGGCAGGCCCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATGGGCCGCCGCAGGAGCAGG
AACAAGCGCTTCTTCCTCGCCTTCT-------------------------------------------------------
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>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S------------S--S---SSS-SS------
---S--S-----S------S--------------------------------------------------S---------
---------------------S----S----------------------------------------------------S
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--S----------------S--------------S--S--------S---------------S-----------------
---------------------------S-----------------S---------SSSS---------------------
---------------------------------------S----------------------------------------
------------------------------S-------------------------------------------------
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--S--------------------------------------------S-------SSSS---S-----------------
-------------SSSSS---------------------------------------S-------S--------------
--------------S--------------------------------------------------------------S--
--------------------------------------S-----------------------------------------
SSS------------------------S-----S---S------------------------------------------
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--------------------------------S----------------S------------------------------
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-------------------------------------------S------------S---------------S-------
--------SS----------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------S------------------S----------------------
--S-S-------------S-----------------------------------SSS----S------------------
---------------S--S-S--------S---S---S-S-----S------------S--------------------S
-----------------S--------SS---------------S---S--SS-S----------------S--S------
-----------SS------------S-----S-------S---S-----SS-------------S---------------
---------------S-------------------S-S----------S-S----S-------------------SS---
-------S------------------S---------------------S--S---------SS-----S---S----S-S
--------------S------------------------------S-------S--------------------S-----
----------S-------S-S------S-SSS----------SS-------------S------------S---------
--------S------SS--------
>forward_184
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----GTTGGCTGAAAGGACTCCGA--------------------------------------------------------
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>reverse_1103
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--------------------------------------------------------------CCATCTGCCTCTTCCTGC
TC------------------------------------------------------------------------------
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>forward_258
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------------------------------------------------------------------------------TG
GTGCTCCTGTGATGTGAC--------------------------------------------------------------
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>reverse_2284
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-------------------------------------------ACGGCTGACGATACGAGATG-----------------
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