>input_sequence_78640
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-----------------------------------------------ATGGCCGGCAAAGCTCGGGTGCTCATGTGCGCG
GCGCTCGTCGTCCTCCTGCTCCTTGTCGAGGTGATCACCTGATCCATGGCGCTA--GACTCTTCCAGAGTACATGCTTGC
TATA-----TATGGTTGCCTAGCTAAACTCTG-CCCTGTTCATTTTCCTCTTCCGCAGACCACCGCTCCGAGTGGACAAG
CTCACGCCGTCGGTAAGCACACGCGCAAGCAT----G----GGATTCATCTGCTAATCCGGCCGAGTTGATCGATCGGCA
CCAGAC-----GACTCATATATCTC--TCCGTCTAACTCTTACAACGATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATCTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGAAGTCTGCCCCTGCTACGCCAACATGACCACGCACAACGGCCGCCACAAGTGCCCGTGA---
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>chr1D_1_TraesCS1D01G270300
CTAAATGTCAATGGTTCATGGAATGTTGAACTTCTACAGACGATATTCTTGCCATGTGATGTTTTGAAAATAA-------
--GTGCATCGCCGAGGCAGGGAGATGATGTGTTGGCTTGGGG-CCAGGCAAACTTTGTACATTTTCAGTTAAGTCTGCAT
ATGACATGGCTTTTGAGGAGTCGTGCAGGGCGACTGCCCAAGCATCGAGTTGTGCGTCGGATGGACGACGAGCTTGCTGG
AAGCTAATATGGAC------------------------------------------------------------------
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------------------------------------------------------------ACTTGAAGTCTCTTCGAACG
ACTAGTATTGTTCATATCAAGCGTGGTCAAAATTTAGTTAGTGA--TTTTTAGCTAGTTTTGCTAGAACTGAGAGTAGAA
CTGTTGTTTGGTTGGGATCAGGACCCCAAGAGGTCATCGATTTATGTAAGCAGGATTGTACGTCTGATGCTTGAGTATTA
TAAGTTTATCTGGAAAAAAAACATATACACACCCGTGCACGCATGCACACAAGACACAAAATCAGGTACGTACACACACC
CGCAATG------------------------TTTTTTAGGAGTACTCCGCTAATTGATCGATATACAGCCTTTGTACGTG
GAGTAGCTTCGGCCTAGTATT----------------------------------TCCAGGCCATACAAAAAATCGACTG
CAACAGAAT-----------------------------------------------------------------------
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------------AAAGTTTCAGGTGACTGAAGAATAGCAAAAGCGATGGAAGTTTGGGAATACATGACACAATCCTGACC
TTCCTATTATCA----------------------------------CGAGATGTACAGGGGGAAACAATCCCAATTACAA
TCCTTCTTCATAATGGCCTGATTACACTAATTGCGACAGGCCCAAAGTATGGTAAGGGGTAACAGAATATCCTTGATATT
TTGTTGCCTAACATATGCCACCACTGTGCGCCCAATGCCAGTCTCGAATACTCA--------CCGGCGGGCCGGCCTAT-
AAAACATGGCCCGGCTCATCCCCTCGCTACAAGGCAAAGGTTTGAGGTTTCCACATTTCCCCTGGTG-AGGAGAAGCAAA
TCGGCAGAGAGCGAAGCAAACC----GGCGGTTCCTAGCCCCTCGCGATGGCCGGCAAAGCTCGGGTGCTCATGTGCGCG
GCGCTCGTCGTCCTCCTGCTCCTTGTCGAGGTGATCACCTGATCCATGGCGCTA--GACTCTTCCAGAGTACATGCTTGC
TATA-----TATGGTTGCCTAGCTAAACTCTG-CCCTGTTCATTTTCCTCTTCCGCAGACCACCGCTCCGAGTGGACAAG
CTCACGCCGTCGGTAAGCACACGCGCAAGCAT----G----GGATTCATCTGCTAATCCGGCCGAGTTGATCGATCGGCA
CCAGAC-----GACTCATATATCTC--TCCGTCTAACTCTTACAACGATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATCTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGAAGTCTGCCCCTGCTACGCCAACATGACCACGCACAACGGCCGCCACAAGTGCCCGTGATCC
AACCCATCTCATCTG-----CACGGTCGATCGACGACAA-----------------------------TAATATCCCATC
AAGCTAGCTACGATCAACGACAACTATA-GACTACGAGAGGCACGATCGATATGATATCATG--TACTCAAACTAGTGC-
TGCTACCTAGTACTATATATGTACCTTGTGCTCATCCAT-----TCGTGATCGAACCATCGTATAAAGCATATGTTTGCT
GTCTCATTCTCACTCACGCATTCGTAATTGCCGTGAATTGAGCTAC----TAAAATTACTGGTGCGTATGTTCATATGTG
CACGTGTGTATGTGCGCGATTATGTATGCGATCAACCGTATATGGAGGACCCTGATGGGTGCTACACATGATAACTCCGA
ACGTATTTTATAGTAAGTTTAGTGACGCGAGCATGACAACTTTACTTGTCAAGCCTGACAACTTTCTTTTTCAATGTCAA
GTTTCATTTTTTTTGGGTTTGTTTTTTCTTTTTGAATGACAATTTTAGTTGTAGAAAATGTCATTGTCAATGCTTTGTGT
CACACGTGATACTTATCATTTGGGTATATTAACCGGTGTTGCTTCTGTGGTCTTTTTTTTTGATATATCTGCAGGTGCAG
GGAGACTCCTGCTAGGTGGCAAAGTAGCAATATAGCTATGGCACGACTGAAAATCCATCTCTGCACCCGAGCTCATCTGC
ACCTGCCCTGATGAAAAAAATCAAAACAAATACTAGAAAAATTCAAAAAATCCCAAAAAAATGTGCTTTAGACAATTTGA
TGCGTGAGGTCCGTTTCAATTTTCAAATCATTTGGACATCTAAGGATCTCTCAGCAAAAAAGATAAATTGGGGGTCTGTA
AAAATATTTACTGGTCATTTACTGTTTTGGCCTGATTTGTTTTTTTTTTGTGAGAGCTGCTCAGATGTCTAAATGACTTG
AAATTTGAAGCGGGCCTCACCCATCAAATTGTCTATCGCATAAAAAAATTGAATTTTTTTGAATTGTTTTCGAATTTTTA
CGAT
>chr4A_1
CTAAATGTCAATGGTTCATGGAATGTTGAACTTCTACAGACGATATTCTTGCCATGTGATGTCGTGGAAATTTTGAAAAT
ACGTGCATCGCCGAGGCAGGGAGATGATGTGTTGGCTTGGGGCCTAGGCAAACTTGGTACATTTTCAGTTAAGTCTGCAT
ATGACATGGCTTTTGAGGAGTCATGCAGGGCGACTGCCCAAGCATCGAGTTATGCGTCGAATGGACGACGAGCTTGCTGG
AAGCTAATATGGGGAACAAATGTACCGCCCACAGTTAAGAATTTTGCATGGAGAGTTGTTGTTGATTCACTTCCTACATG
GCAGAATAAAAACAAGCGTGGATTAGAGGTAACAAGTTTATGTCCGGTGTGTGCAACTGAGCCTGAAGACAGTTTTCATG
CCCTGTGTCAATGCCCACTTGCAATGCCCACTTGCAGTGCAACTCTGGAAATGCATGAGTGAGGTCTGGCGCCTGCCGAA
ATTAAAGGAGGTGTCTAACATGGGTGTAGAATGGCTGCTGGAGGTTTTGTATCCTTTGGGAGATATTGAGCGAGCTATGT
TATTATTCACTTTATGGAGATGTTGGCATAATCGAAATGAGTTGGTACATAAGAAAATTCCAGCACCAATGGATGCTTCG
CGCCAGTATTTATG--------------CGTTAATTGCTATAGCTCAAAATTCTAATTATGATTTGGTGAAAGGTAAAGC
GGTGATATCTTATGATCCAACGGTAAATAGGCCACATGAAATATCAAGAATTGTGCCTCCTGTTAAGTGGCTTCCTCCTC
CTGAGGGTTGGGTGAAGCTCAATACGGATGGTTCCTGGACTAATGATGGAAGGGCTGGTGCTGGTATGGTGCTTCACGAT
AATCTAGGCAACATTATTTACTCATCTTGCAGGGAGTTATTTTCATGCCGAGATGTCCTTGAAGCAGAATTATGCGCATG
CATGGAGGGTTTATCCATTGCTATTCAACGGACGGAACTTTCAGTTTGTATCGAAATGGATTCACTTATAGCGGTGAACA
TGTTGAGGGACAAGGACATTGACAGGTCAATCTACGCGTCTTTGGTGGCAGAGATAAAGTACTTGAAGTCTCTTCGAACG
ACTAGTATTGTTCATATCAAGTGTGGTCAAAATTTAGTTAGTGA-TTTTTTAGCTAGTTTTGCTAGAACTGAGAGTAGAA
TTGTTGTCTGGTTGGGATCAGGA-CCCAAGAGGTCATCGATTTATGTAAGCAGGATTGTATGTTTGATGCTTGAGTATTA
TAAGTTTATTCGTAAAAAAAA-----------------------------------------------------------
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----
>chr2A_1
CTAAATGTCAATGGTTCATGGAATGTTGAACTTCTACAGACGATATTCTTGCCATGTGATGTCGTGGAAATTTTGAAAAT
ACGTGCATCGCCGAGGCAGGGAGATGATGTGTTGGCTTGGGGACCAGGCAAACTTGGTACATTTTCAGTTAAGTCTGCAT
ATGACATGGCTTTTGAGGAGTCATGCAGGGCGACTGCCCAAGCATCGAGTTATGCGTCGGATGGATGACAAGCTTGCTGG
AAGCTAATATGGGGAACAAATGTACCGCCCACAGTTAAGAATTTTGCATGGAGAGTTGTTGTTGATTCACTTCCTACATG
GCAGAATAAAAACAAGCGTGGATTAAAGGTAACAAGTTTCTGTCCGGTGTGTGCAACTGAGCCTGAAGACAGTTTTCATG
CCCTGTGTCG-------------ATGCCCACTTGCAGTGCAACTCTGGGAATGGATGAGTGAGGTCTGGCGCATGTCGAA
ATTAAAGGAGGTGTCTAACACGGGTGTAGAATGGCTGCTGGAGGTTTTGTATCCTTTGGGAGATATTGAGTGAGCTATGT
TATTATTCACTTTATGGAGATGTTGGCATAATCGGAATGAGTTGGTACATAAGAAAATTCCAACACCAATGGATGCTTCG
CGCCGGTATTTATGCAGCTACCTTGAGTCGTTAATTGCTATAGCTCAAAATTCTAATTGTGATCCGGTGAAAGGTAAAGC
GGTGATATCTTATGATCCAACGGTAAATAGGCCACATGAAATATCAAGAATTGTGCCTCCTGTTAAGTGGCTTCCTCCTC
CCGAGGGTTGGGTGAAGCTCAATACGGATGGTTCCTGGACTAATGATGGAAGGGCTGGTGCTGGTATGGTGCTTCGCGAT
AATCTAGGCAACAATATTTACTCATCTTGCAGGGAGTTATTTTCATGCCGAGATACCCTTGAAGCTGAATTATGCGCATG
CATGGAGGGTTTATCCATTGCTATTCAACGGACGGAAATTCCAGTTTGTATCGAGATGGATTCACTTATAGCGGTGAACA
TGTTGAGGGACAAGGACATTGACAGGTCAATCTACGCGTCTTTGGTGGCAGAGATAAAGTACTTGAAGTCTCTTCGAACG
ACTAGTATTGTTCATATCAAGCGTGGTCAAAATTTAGTTAGTGATTTTTTTAGCTAGTTTTGCTAGAACTGAGAGTAGAA
CTGTTGTCTGGTTGAGATCAGGACCCCAAGAGATCATCGATTTATGTAAGCAGGATTGTACGTTTGATGCTTGAGTATTA
TAAGTTTATCCGCAAAAAAAA-----------------------------------------------------------
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----
>chr6A_1
CTAAATGTCAATGGTTCATGGAATGTTGAACTTCTACAGACGATATTCTTGCCATGTGATGTCGTGGAAATTTTGAAAAT
ACGTGCATCGCCGAGGCAGGGAGATGATGTGTTGGCTTGGGGCCCAGGCAAACTTGGTACATTTTCAGTTAAGTCTGCAT
ATGACATGGCTTTTGAGGAATCATGCAGGGCGACTGCCCAATCATCGAGTTATGCGTCGTGTGGACGACGAGCTTGCTGG
AAGCTAATATGGGGAACAAATGTACCGCCCACAGTTAAGAATTTTGCATGGAGAGTTGCTGTTGATTCACTTCCTACATG
GCAGAATAAAAACAAGTGTGGATTAGAG-----AAGTTTCTGTCCGGTGTGTGCAACTGAGCCTGAAGACAGTTTTCATG
CCCTGTGTCG-------------ATGCCCACTTGCAGTGCAACTCTGGGAATGCATGAGTGAGGTCTGGCGCCTGCCGAA
ATTAAAGGAGGTGTCTAACACGGGTGTAGAATGGCTGCTGGAGGTTTTGTATCCTTTGGGAGATATTGAGCGAGCTATGT
TATTATTCACTTTATGGAGATGTTGGCATAATCGGAATGAGTTGGTACATAAGAAAATTCCAGCACCAATGGATGCTTCG
CGCCAGTATTTATGCAGCTACCTTGAGTCGTTAATTGCTATAGCTCAAAATTCTAATTGTGATCCGGTGAAAGGTAAAGC
GGTGATATCTTATGATCCAGCGGTAAATAGGCCACATGAAATATCAAGAATTGTGCCTCCTGTTAAGTGGCTTCCTCCTC
CCGAGGGTTGGGTGAAGCTCAATACGGATGGTTCCTGGACTAATGATGGAAGGGCCGGTGCTGGTATGTTGCTTCGCGAT
AATCTAGGCAACATTATTTACTCATCTTGCAGGGAGTTATTTTCATGCCGAGATGCCCTCGAAGCAGAATTATGCGCATG
CATGGAGGGTTTATCCATTGCTATTCAACGGACGGAACTTCCAGTTTGTATCGAGATGGATTCACTTATAGCGGTGAACA
TGTTGAGGGACAAGGACATTGACAGGTCAATCTACGCGTCTTTGGTGGCAGTGATAAAGTACTTGAAGTCTCTTCGAACG
ACTAATATTGTTCATATCAAGCGTGGTCAAAATTTAGTTAGTG-TTTTTTTAGCTAGTTTTGCTAGAACTGAGAGTAGAA
CTGTTGTCTGGTTGAGATCAGGACCCCAAGAGGTCATCGATTTATGTAAGCAGGATTGTACGTTTGATACTTGAGTATTA
TAAGTTTATCCGCAAAAAAAA-----------------------------------------------------------
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>chr3B_1
CTAAATGTCAATGATTCATGGAATGTTGATCTTCTAAGGACGATATTCTTGCCATGTGATGTTGTGGAAATTTTGAAAAT
ATGTGCATCGCCGAGGCAAGGAGATGATGTGTTGGCTTGGGGCCCAGGTAAACTTGGTACATTTTCAGTTAAGTCTGCAT
ATGACATGGCTTTTGAGGAGTCGTGCAGGGAGACTGCCCAAGCCTCGAGTTATGCATCGAATGGATGGCGAGCTTGCTGG
AAGCTAATATAGGGAACAAATGTACTGCCCACAGTTAAGAATTTTGTGTGGATAGTTGCTGTTGATTCACTTCCTACATG
GCAAAACAAAACCAAGCGTGGATTAGAGGTAACAAGTTTCTGTCCAGTGTGTGCAACTGAGCTGGAAGATAGTTTTCATG
ACATATGTCG-------------ATGCCCACTTGCTGTGCAACTCCGGGAATGCATGAGTAAGGTCTGGCGCCCACCGAA
ATTAAAGGAGGTGTCTAACACGGGCGTAGAATGGCTGCTGGAGGTTTTGTATCCTTTAAGAGACATTGAGCAAGTTATGT
TATTATTCACCTTATGGAGATGTTGGCATAATCGGAATGAGTTGGTACACAATAAAATTCCTGCACCGATGAATGCTTCG
CGTCATTATCTATGCAGTTACCTTGAGTCTTTAATTGCACTAGCTCAAAATTCTAATTGTGATCCGGTGAAAGGTAAAGC
GGTGATATCTTATGATCCATCAGTAAATAGGCCACATGAAATATCAAGAATTGCGTCTCCTGCTAAGTGGCTTCCTCCTC
CGGTGGGTTGGATGAAGCTCAATACGGATGGTTCCTGGACTAATGATGGAAGGGCTGTTGCTGGCATGGTGCTTCGTGAT
AATCTAGGCAACATTATTTACTCATCTTATAGGGAGTTATTTTCATGCCGAGATGCCCTTGAAGCGGAAATATGTGCATG
CATGGAAGGTTTCTCCATTGCTATTCAGCAGACGTAACTTCCAATTTGCATCGAGATGGATTCACTTACAGCGGTGAACA
TGTTGAAGGACAAGGACATTGACAGGTCAATCTATGCATCTTTGGTGGCAGAGATAAAGTAGTTGAAGTCTCTTTGAACG
ACTCGTATTGCTCATATCAACTGTGGTCAAAATTTAGTCAGTG-ATTTTTTAGCTAGTTTTGCTAGAACTGAGAGTAGAA
CTGTTGTCCGGTTGGGATCAGGACCCCCAGAGGTCATCGATTTATGTAAGCAGGATTGTACGGTTGATGCTTGAG---TA
TAAGTTTATCTGCAAAAAAAA-----------------------------------------------------------
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>chr1B_442
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-------------------AACATATACACACCCGTGCACGCATGCACACAAGACACAGAATCAGGTACGTACACACACC
CGCACGTTTGCATGCCCCCGCTGATTAATCTTTTTTTAGGGGTACTCCGCTAATTGATCGATATGCAGCCTTTGTACGTG
GAGTAGCTTCGGCCCAGTATT----------------------------------TCCAGGCCATAGAAAAAATCGACTG
CAACAGAATCTCTACTCTTAATGGACGAATTGGTTGAATAGTCCCCCCACTTTCAACCGGTTTATTTTCAACTGATTTAT
TTTCAACCGGTTTTTCTTCGTCCCACCTCCCACCAGCCCCTCCCACCGGTTTTTCTCTTTTCTCGTCTGACCGGCAACAC
CCAACGTATTTATGGTAATCAATCATAATTAATCCACGTATAGTAATAAATCAATCCAGGTATGGTAAGGTCATAACTCA
GGAAATTTTGAATATGGTAATTATATGGTAATTATATGGTAATAAATTTAAATTACCCCAAAGGCTATCAATCCAGGTAT
GGTAAGGCCATAACTCGGGAAATATCGAATATGGTAATAAATTTAAATTACCACCAGGTATGGTAAGGCTATCCACGTAT
AGTAATAAATCATATAGTAATAAATCATAATTAATCCATGTATAGTAATAAATCAATCCAGGTATGGTAAGGTCATAACT
CAGGAAATTTTGAATATGGTAATTATATGGTAATAAATTTAAATTACCCCAAAGGCTATCAATCCAGGTATGGTAAGGCC
ATAACTTGGAAAATATCGAATATGGTAATAAATTTAAATTACCACCAGGTATGGTAAGGCTATCCACGTATAGTAATAAA
TCATATAGTAATAAATCATAATTAATCCACATATAGTAATAAATCAATCCAGGTATGGTAAGGTCATAACTCAGGAAATT
TTGAATATGGTAATTATATGGTAATAAATTTAAATTACCCCAAAGGCTATTAATCCAGGTATGGTAAGGCCATAACTCGG
GAAATATCAAATATGGTAATAAATTTAAATTACCACCAGGTATGGTAAGGCTATCAATCCAGGTATGGCACGCCCTCACC
TGATCACCTATCACAATCTCCAGCCCCACGCACGCACCAAAGAACCCACCCGGCACCAAACGCAGCTCCTCTCGATCCCC
TCGAGTAAACGCCGCCGCCGTCATGCGATCTTCCTGACACAGACGCCGTCGCCGCCTCCTTCCCACCTACGGCGTCCCCC
ACGTCCATGGTGACGGTGCTCGCGTCCTACACTGACCCTCCGCCTCATATAGGTTGGTCGTTGATGGAGTGGGATGTGCC
GCTGCGGTTTGGGGAGGCGCAATCATGATCTGGTTGGGATCTCAGTGTGGAATCGTTCTCTGCAATGAAGGATGGCGCTG
CCTCCCTGGCAAATGGGATCGGAGGAAGGGGCTCTACGTCGTGAATGTCGGCGAGGCAGCGGCCGAAGGCGAGCCCGACG
GTGAGCACGGGTGTTCGTCCCATGAAATAGGCGGCCACGGAGGGCGGATCTGAGGCCACCCCAATCGCCGGTGGCCCTTC
CTCCCATCGATCATCGCCTCCATTCTCTCTCTCCTCTAAATCTTTGTCGCCCCTGCCTGATTCTGGCCGACGCCATCCGG
CTCTCGCATCGACCACCACCAGCACGGCTGCGGACGAGGCGCAACCGCAGACGCCGCCGCCGCCATCCTCATCCACCTCC
TCCACCATCCTTCCCAGCCGTCGTCGGGGGCACCCGCCATCTGCGCTCTAGCCCACCCGCTCCCTCCTATCCCCTCCCCC
TGCCTGCCAGCCCCGTGATCCATCGCACAGATGGCAGGTACTACAGTGACCTCCTCCCCAGCGGATCCGGCCTCCTCCGA
TGGAGATCCATCCTGGGCACCGCCTTATTCTCATGCGTGCACGTCTATATCGACGTCTCATTCCACCTCACCTGAGCCTT
TACCTTCCCACCTCTGCTTCAGATCCACATCACTTTGCAAGGTATGTGCTTGATTGTTCCGAACTGGATCGGTGGATTGT
GCAAGGTACTTTGGGTGTCGTCATTGACGGCAATTGTCATGCCATGCTACCATCAGAGGGGTCCCTCATCGATGATTAGG
GTCTTCCGAACTGCACGAGCTCCATTGAGCTAATGTCTTCTTATAGATAGTAGCTGCTGAAGTGGTGATCAAAGTTGTTC
ACTATAAGGAAACAACCATGATAACAAAAGTATATATTCCCTGACCTTTGACCTGAAGTACTTTTTCATTAGAAACTTGC
AACAGCCAGGCATTGAAGTTAGCAACAGCTTCGTACGTACTGAACTAATTTGCAGCAACACGTACTGAACTAAGTTAGGT
TATGCTCATCGTTCCAACATGCTTAGTGATAACCACCTAGCAAGCTGATCAAACATGAAAAAATTGAAGTGCTACTGCTA
ATCGTACTATTCTGAATGTGAAAATCTATTTAATTGGCTCTTCTCTAATTGTACACTTGCATAAATCTCAGATCTTGCAA
ATTACAGTATAACCATAAAAGTCATGCTTTGACTCCTATAGGGCCTTTTGCACTTTAATATGACTAATAGTTTGCCTTAA
TATCACAGATTGTATTACTACCTTTCTAAGTGAATGACATTCAAGAAGGTCATTAAATAAAACCAAGAAATCCTTCTGGT
ATTGGAGTGTAGGAAAGTTGAGACTATAAAACCAAAAGGTTATATTTACGTTTATTAGAGAAGGTTCTTTACTTTTTATA
GGAAAACACAAAATGTTGCGATGTAGAGTCTAGGTGGTGGACCTCCTTGATCCACTTGGTGGATGAGGGCGACTCCGGTC
CTGGCACCTATAGTGCCAGTGATCCAAAAATCATAGGGCCTGGATATAGCTCTAGCAGACGTATGCGGCTTGCGCATCGA
GCTTGGTCGTCTCGAGCATGGAGATAGGCGAGTTGTAGACCAAGAGCTGGTACAGAGATAGGCGAGTTGTAGACAAGAGC
TGGTGGGCAGCAAGAAACGCATGCACACCAAGGAACAAATCTGAGTCACATGCCTACTTCTATTGGTTTCTACAAAGAGC
GGCTAGCTTAGATCTTAGACCAGTCGGTCACTGTCGAGGTCGCCAAGGTGATCTTACAGCACCGCCGTGGAGATTTCTCA
TGATTTTATGTAGGCAAGCCGCAAGCGGTGGTGGTGATTGGCTGGGTGGTGTCGCTGCCTTGGGAAGAGACGAAGTGATG
GTAAAAGTAAGCAGGATCCGATGATTTTTCCGTGGGGATAGCCAAAGTCAAGGTGTCGACTACAGACTCGTCCCAGACTT
GCAGTGAACCTGGATGCGGCGAGCCTGATTTGTGGATCGATGGCGGGTCTTGACTTTGTTAGGCTGGGATTGGATGGTTG
CGGAGGGTGGTGTGCTTGGTTGGGTTCCCATGGAAGAATGCGACCTCCTCGTGGATCTGGTCATGCCCATCCTAGAGAAC
ATTGTGTCCCTAGCTCCCTCGAGGAGCAAGGACAGTGCAAGCGGCAGCAGGGGGTAGGGGTAGATGTGGGGAGGGATGTC
GGCGGCTGCTCGAGGTCATCATGATGAAACCCTTGACGTCCCATCTTTATCAATGGAAGTGGAAGAGCACGAAGTCGAGA
TTGGATAGGAGTTTGAGTTCTTTTTGGCACCGATCGGTTCCCCACTTTAGAGATGTATTTTTTTTTGCGTGCGAGCAAAC
AGTGGGTTGATTCTAAAAGGGATAGGCACTTTTTAATAGAAGTGCATGACGGACCAAAAATATGACCTCATTTTATTCGT
TTGATAGATATCGTATTATTCGTTGTTGTTCGTTCGGTGAAATTTCCTAATATTTGATTGTTCTGTTTCTAATTAGAGCA
CCCATAATCACCCAATATGAGGGGATGATAAATAAAAGATACCGATTATAAATTTTGAAGAGCCCGTGGCAACGCACGGG
CGTTATACTAGTAAAGTTTCAGGTGACTGAAGAATAGCAAAAGCGATGGAAGTTTGGGAATACATGACACAATCCTGACC
TTCCTATTATCACATATATAAGACTATATATATATAGCAGATTCCACGAGATGTACA--GGGAAACAATCCCAATTACAA
TCCTTCTTCATAATGGCCTGATTACACTAATTGCGACAGGCCCAAAGTATGGTAAGGGGTAACAGAATATCCTTGATATT
TTGTTGCCTAACATATGCCACCACTGTGCGCCCAATGCCAGTCTCGAATCCTCA--------CCGGCGGGCCGGCCTAT-
AAAACGTGGCCCGGTTCATCCCTTCGCTACAAGGCAAAGGTTTGAGGTTTCCGCATTTCCCCTGGTG-AAGAGAAGCAAA
TCGGCAGAGAGCGAAGCAAACC----GGCGGTTCCCAGCCCCTGGCGATGGCCGGCAAAGACAGGGTGCTCATGTGCGCG
GCGCTCATCGTCCTCCTGCTCCTTGTCGAGGTGATCCCCTGATCCATGGCGCTATAGACTCTTCCACAGTACATGCATTC
TAGAATA---TTGGTTGCCTTGCTAAACTCGGTCCCTGTTCATTTTCCTCTTCCGCAGACCACCGCTCCGAGTGGACAAG
CTCACGCCGTCGGTAAGCACCCACGCACGCAT----G----GGATTCATCCGCTAGTCCGGCCGAGTTGATCGATCGGCA
CCATC-------ACTGATATATCTC--CCCTTCTAACTATTACAACGATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATCTGTGCAACAGGGCGTGCAACGCGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGAAGTCTGCCCCTGCTACGCCAACATGACCACGCACAACGGCCGCCACAAGTGCCCATGATCC
AACTG--CTCATCTC-----CACGGTCGATCGACGGCAA-----------------------------TAATATCCCATC
AAGCTAGCTACGATCAACGACAACTAGACTATCAGAG--------------------TCATG--TACTCAAACTAGTGC-
TGCTACCTA------TATATGTACCTTATGCTCATCCATA---TTCGTGATCGATCCATCGTGTAAT-CATATGTTTGCT
ATCTGATTCTCAC----GCATTCGCAACTGCCGTGAATTGCTCTACGTACTAAAAAAAGTGGTGCGTATGTTCGTATTTG
CACGTGTGTATGCGCTA-------TATGTGCTCAAGCGTATAT-------------------------------------
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>chr1A_537
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----------------------------------------------------------CGATATAGAGCCTTTGTACGTG
GAGTAGCTTCGGCCCAGTATTGCTAGCCTAGCCAGTTACATGGACAGTGGGCTGTTCCAGGCCATAGTAAAAATTGACTG
AAACAGAAT-----------------------------------------------------------------------
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------------ACATTTTCAGGTGACCGATGAATAGCAAAAGCAATGAAAGTTTGGGAATAGACGACACAATCCTGACC
TTCCTATTATCTCATA----------TACATATATAACATATA-CACGAGATGTACA--GGGAAACAAACGCAATTACAA
TCCTTCTTCATAATGGCCTGATTACGCTAATTGCGACAGGCCCAAAGTATGGGAAGGGATAACAGAATATCCTTGAT---
-------------------------------------------------------CGCTGCTCCGGCCGCCCGGCCTAT-
AAAACGTGGCCCTCGCCCCCTC-GCTACCAAAGCCAAGAA-------TTCCCACATTTCCCCTGAG-AAAGAGAAGCAAA
TCGGCAGAGAGCGAAGCAAACCAGCCGGCGGTTCCTGGCCCCTCGCGATGGCCGGCAAAGCTAGGGTGCTCATGTGCGCG
GCGCTCGTCGTCCTCCTGCTCCTTGTCGAGGTGATCACCTGATCCATGGCGCTA--GCCTCTTCCACAGTACATGCATGC
TATA-----TATGGTTGCCTAGCTAAACTCTGAGCCTGTTCATTTTCCTCTTCCGCAGACCACCGCTCCCACTGGACAAG
CTCACGCCGTCGGTAAGCACACTCGCATGCAT----G----GGGTTCATCTGCTAGTCCGGCCGAGTTGATCGATCGGCA
---------------GATATATCTA--CGCTTCTAACTCTTACAACTATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATCTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGGCGTCTGCCCCTGCTACGCCAACATGACCACGCACAACGGCCGCCACAAGTGCCCGTGATCC
AACCG--G-CATCTCATCTCCACGGTCGATCGCGA-----------------------------CAATAAATATCACATC
AAGCTAGCTACGATCAATGACTACTAGCAGACTACCAGAGGCACGATCGATATGATATCATG--TACTCAAACTAGCGCT
TGCTACCTA------TATATGTACCTTGTGCTCATCCATAATATTCGTGATCGATCCATCGTATAAT-CATATGTTCGCT
ATCTTATTCTCAC----CCATTCGCAAAGGCCGTGAATTGCTCTACGTACTAAAAAAAGTGGTGCGTATGTTCGTGTTTG
CATGTGTGTATG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_823
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---------------TGCCACCACTGTGCGCCTAGTGCGAGTCTCGAGTCCTCA--------CCGCT------GCCTAT-
AAAACGTGGCCCTCGACCCCTCCGCTAGCAAAGGCAAAGGTTTC----TTCCACATTTCCACTGAGCAAAGAGAAGCAAA
TCGGCAGAGAGCGAAGCAAACC----GGCGGTTCCTGGCCCCTCGCCATGGCCGGCAAAGCTAGGGTGTTCATGTGCGTG
GCGCTCGTCGTCCTCCTGCTCCTTGTCGAGGTGACCACCTAATCCATGGCGTTA-AGACTCTCCCACAATACATGCATGT
TATG-----TTTGGTTGCCTAGCTAAACTCTGCCCTTGTTCATTTTCGTCTTCCGCAGACCACCGCTCCGAGTGGACAAG
CTCACGCCGTCGGTAAGCACCCACGCACGCAT----G----GGATTCATCCGCTAATCCGGCCGAGTTGATCGATCGGCA
CCATC-------ACTGATATATCTC--CCCTTCTAACTATTACAACGATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATCTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGACGTCTGCCCCTGCTACGCCCACATGACCACGCACGACGGCCGCCACAAGTGCCCATGATCC
AACCG--C-CTTCTC-----GACGACCGATCGAGGCTAATGCATGCTCGAT---CATGGCGTCTCAGTTAATATCCCATC
AAGCTAGCTACAACCAACGATAACTA---GACTACCAGTGGCACGATCGATATGATATCATG--TACTCAAGCTAGTGC-
TGCTACCTA------T----CTACCTTGTGCTCATCCAT-----TCGTGATTGATCCATCGTGTAAG-CAT--GTTTGCT
ATCTCATTCTCAC----GCAGTGGTAATTGCTGTCAATTGC-------ACTAAAA-------------------------
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>chr1B_823
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---------------TGCCACAACTGTGCGCCCACTCCGAGCCTGGAGTCCTCACCGCTGCTCCGGCGTTCCGGCCTATA
AAAACGTGGCCCTCGTCCCCTCCGCTAGCAAAGGCAAAGGCTTC----TTCCACATTTCCACTGAGCAAAGAGAAGCAAA
TCGGCAGAGAACGAAGCAAACCGGCCGACGGTTCCTGGCCCCTCGCCATGGCCGGCAAAGCTAGGGTGTTCATGTGCGTG
GCGCTCGTCGTCCTCCTGCTCCTTGTCGAGGTGATTACCTGATCCATGGCGTTA--GGTTCTTCCAGAGCACATGCATGC
TATG-----TTTGGTTGCCTAGCTAAACTCGGTTCCTATTCATTTTCGTCTTCCGCAGACCACCGCCCCGACTGGACAAG
CTCACGCCGTCGGTAAGCCCACGCACGCATTCATGGG----TGACTCATTTGCTAGTCA----GACTTGATCGACGGGCA
TGCATGCGCCAGACTGATATATACGTATCCTTCTATACGCT-----GATTTGCAGATTGCGGCGGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGTCGACCGAATCTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCAACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGACGTCTGCCCCTGCTACGCCCACATGACCACGCACGACGGCCGCCACAAGTGCCCATGATAC
AACCG--C-CATCTC-----CACGGTCAATCAAGACTACTACATAGTCGATCGTCATGGCCTCTCAATTAATATCACATC
TA--------CGATCAGCGACAGCTA---GACTACCAGAGGCACGATCTATATGATACATGTACTACTCAAGCTAGTGC-
TGCTACCTA------T----GTACCTTGTGCTCATCCAT-----ACGTGATCGACCCATCGTGTAAG-CAT--GTTTGCT
ATCTCATTCTCAC-------------------------------------------------------------------
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>chr1A_823
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---------------TGCCACCACTGTGCGCCACTGCGAG---------CCTCACCGCTGCTCCGGCGGCCCGGCCTAT-
AAAACGTGGCCCTCGCCCCCTC-GCTAGCAAAGGCAAAGGTTTC----TTCCACATTTCCCCTGAGCAAAGAGAAGCAAA
TCACAAGAAAGCGAAGCAAATC----GGCGG---------------GATGGCCGGCCAAGCTAGGGCGTTCATGTGCGTG
GCGCTCGTCGTCCTCCTGCTCCTCGTCGAGGTGATCACCTGATCCATGCCCTTA--GAATCTTCCAGAGCACATGCATGC
TACGTACGTTTTGGTTGCCTAGCTAAACTCGGTTCCTGTTCATTTTCCTCTTCCGCAGACCACCGCCCCGAGTGGACAAG
CTCACGCCGTCGGTAAGCGCACACGCATGCAT----GCATGGGGTTCATTTGCCAATCCAGCCGACTTGATCAATCGGTA
CCAGAC-----GACTGATATGTGA-TATCCTTCTAACTCTTACAACTATTTGCAGATTGCGGCAGCGCGTGCTCGTACCG
GTGCAGCAAGTCGAGCCGGCCGAATTTGTGCAACAGGGCGTGCAACACGTGCTGCCGGCGATGCGACTGCGTGCCGCCCG
GCACCGCCGGCAACGAGGACGTCTGCCCCTGCTACGCCCACATGACCACGCACGACGGCCGCCACAAGTGCCCATGATTC
AACCG--C-CTTCTC-----GACGGCCGGTCGAGGCTAATGCATACTAGAT---CATGGCGTCTCAGTAAATATCCCATC
AAGCTAGCTACAGCCAACGATAACTA---GACTACCAGGGGCACGATCGATATGATATCATG--TACTCAAGCTAGTGC-
TGCTGCCTA------T----GTACCTTGTGCTCATCCAT-----CCGTGATCGATCCATCGTGTAAG-CAT--GTTTGCT
ATCTCGTTCTCAC----GCAGTGGTAATTGCCGTCAATTGC-------ACTAAAACAATTAGTGCGTATG----------
--------------------------------------------------------------------------------
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----
>SNPs
---------------------------------------------------------------S--S----SS-------
-------------------------------------------------------S------------------------
---------------------------------------------------S----------------------------
------------SS------------------------------------------------------------------
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-------S-------------------------------------------------------S----------------
------------S---------------------------------------------S---------------------
----SSS---------------------------------S---------------------------------------
--------------S---------------------------------------------------S-------------
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---------------------------------------------------------SS---------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-----S--------S------------------------------------------------------S----------
--------------------------------------------------------------S-----------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
---------------S--------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----SSS-------S--------------------S--------------------------------------------
--------------------------S--------S--------------------------------------------
---------SSSSSS---------------------------------------S-----------SS------------
S------------SSSS-----------------------SS-------------SS-S--------------S---S--
------------S--SSSSSSSSS----S-S----S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_1339
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---------------------------------------CGCATGCACACAAGACACAA---------------------
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----
>reverse_6879
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------------------------------------------------------------------------------AG
GGAGACTCCTGCTAGGTG--------------------------------------------------------------
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----
