>input_sequence_78629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATGGCGAGCCCAATGGTGGCGACTC
CAATCCGCCTCAGCAGCCTCAGATACGCCCCTCCTTCCCCAGCACCCAGAGGACGATTCGTGGCGGCGAGGGTGAAGGCG
GAGGCGGA------GGCGATGGCGACGGAGAAGCTCGGCGTCAGGGTGGAGCGCAACCCGGCCGAGTCCCGCCTCTCCGA
GCTCGGCGTCCGCCAGTGGCCCAAGTAAGCCCCGCCCGATCTCTTCCGCTTAGTAGA-TCC-TCTTGTCTGGGCGTCGAT
GGTGATGCGATGGCGCC----TGCATGCAGGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACCTACTCGGCCAAGGAGA
CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTACCCGGACGGCGAGGAGGGGTTCGTGGAGATCGCGGCGGGGGACCTG
GTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2D_1_TraesCS2D01G311500
TGGCTACTTGCTAGTCATCACACATAGTTGACATGATTCACTCCCTAATCCTAGTAATTTATCTTTTCTAAACTTCATTA
GAGACCGTTAGTAAAACTGAACCAAATGGAAAACTGACATGGCAAACAAAAGTATCTACATAGCACGCCACATAAGCACG
GAGGTTTAACTTTCCAAAACAGCAAAAAGAAAAACAAAAAGAGGTTAAAAAAGGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCACCCCACACACACACACACACACACAAAAAGGAATAACATGGAGGAATTTTCCTTGA
ATAGGGTAAA----------------------------------------------------------------------
------------------------------------------------ACTTGTTACAAACATGAAACTCATAAATAATG
AAATTAGCC-TTTTATTTTTGGAATCATGCAACGTTTAT----TGACTCTCAGAAATCTTTAGGGGTATAGTTACATGAT
CATGAGGCACTCCAAGCTAAACATGATGGCCAAAATCTAAATAGAAAGCATGTCTAGCTAAATTATGAGTTTCCATCCGT
TTCGAAAAAAAAATTAT--GAGTTTCCACATTACTCTGCCTGCCTTCATTTTTTTCCTTTTTGAGGAATACCTGCCATGG
GTAGAATATAGCAGCACTCCTCAAAATCCTTCATTAACACACCCGC----------------------------------
----------AAAAAAAATCCTTCATTAACTCTT----------------------------------------------
-------------------------------------------------TTTTTTTTGCAGGAGGACGCGCCGCCGAGTG
GCGAAGATAAGAGACGAGTGGGCCTAGATTTTTGTATCAGTAGAGAAAAACCTGGGCCACTGATCGGC-----AATCGAG
AACCTTCCC--TTCGGCGCCTAATCTGC---ACTGCACTGCAGACCACACCGGCCCAGAGGA------------------
-----------CTCTG--------------------------------CAAAGGAATGGCGAGCCCAATGGTGGCGACTC
CAATCCGCCTCAGCAGCCTCAGATACGCCCCTCCTTCCCCAGCACCCAGAGGACGATTCGTGGCGGCGAGGGTGAAGGCG
GAGGCGGA------GGCGATGGCGACGGAGAAGCTCGGCGTCAGGGTGGAGCGCAACCCGGCCGAGTCCCGCCTCTCCGA
GCTCGGCGTCCGCCAGTGGCCCAAGTAAGCCCCGCCCGATCTCTTCCGCTTAGTAGA-TCC-TCTTGTCTGGGCGTCGAT
GGTGATGCGATGGCGCC----TGCATGCAGGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACCTACTCGGCCAAGGAGA
CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTACCCGGACGGCGAGGAGGGGTTCGTGGAGATCGCGGCGGGGGACCTG
GTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGCCTGC
ACCTACACCGCTGCACG----GCCGGCCGCTGTGCTGCCTGCTGCCGCTACTAGCACTAGACTGAGGTATTTGTAGCCGG
ATTATGTTGTGCTCGAGTGGATCTCTTCTCTTGTGGTGGAATAAAAACGCCAGATTAGTGGATTGTGCTTGTCCAACCTT
CTCTGTGGAAGCAAAC------------------------------CGTCCGTATTTTGTTT------------------
--------GCG-TTGCAACGGGGGCACATAGACATGTGGCCAAAAAATTCAGTGAGTTCTTTACATGATAACTGTGATTT
AACA-TAAAAGGGCTCTTTACCATCTATATCCTCCCAATATGCAAAACAATTA---------GAATGTATACATACCATG
CCAATTCAATTAGTAAAGCTCATGTCTAATTTCAGAAGCTAATGGCCAAGGAGCTGGCAATTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAACTCTTCACCTGCTTCTCTCTTACACTCAGCTCTGAAGTCGCCAC
ATCCT----C----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CAACTATTCTGAAATCTGACTGTTATCTGAAAACACGGGATTCACCAAGAGTATTG
ACAAT------------------------------------------------------------------------GAA
CATGATGATAGTTTGAAGTATAATGTATTCAAGCATATAACTCGCATATCTCACATAATTTGCAGTTCTCAACTGAGCCG
GGGCACAACAAATTAGTACTCTATCGGTCCGGAAATACTTGTCCCAAAAATAGATGTATCTAGACGTATTTTAGTTCTAG
ATACATCCATTTCTATTCATTTTCGTGACAAGTAATTACGGACGGAGGGAGTATTACCTTTGGACAATGGCACAATGCCA
TACTTTGTGGTAACAACTAACAACCTTATCGTTTTGGCCGAGATATTATGACCACTTTGGATCATTCCCTCTTAACAAAA
ATGCTAGTGATCTTTCTCTGACACTAGTAT----------------TTCAGTTTTGCTAAAA------------------
--------CACATCTAAGTCCCATGTTATTGATCTTATGTGGAGATTCGTGTGGGTATTTTCTTTTCCTTTTTATGCT
>chr2A_25
------------------------TAGTTGACATGATTCACTCTCTAATCCTAGTAATTTATCTTTTCTAAACTTCATTA
GAGATCGTTAGTAAAACTGAACCAAATGGAAAACTGACATGGCAAACAAAATTATCTACATAGCACGCCACATAAGCATG
AAGGTTTAACTTTCCAAAACAGC--------AAAAAAAAGGAGGTAAAAAAAGGTATCAGTTTAGTTAAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGTTACAAACGTGAAAGTCATAAATAATG
AAATTAGCC-TTTTATTTTTGGAGTCATGCAACGTTTATATATTGACTCTCAAAAATCTTTAGGGGTATAGTTACATGAT
CATGAGGCACTCCAAGCTAAACATGATGGCCAAAATCTAAATAGAAAGCATGTCTTGCT---------------------
----------AAATTAT--GAGTTTCCACATTACTCTGCCTGCTTTCAT-TTTTTCCTTTTTGAGGAATACCTGCCATGG
GTAGAATATACCAGCACTCCTCAAAATCCTTCATTAAAGCCCCGTTCGGCAACACTCCAGCTCCCGACTCCGTGGAGCTG
AATCAACAAAAAAAAAGATGGTTCATTTTTGAGGAGCAGCTATTCTGTCGCTCCTCGTTTCCAGCATCGAGCGGAGCGGA
GCGGAGGGAGTGGTCCGTTTCCGATCGGGGCCTAACTCTCTCTCTCTTCTTTTTTTTGCAGGAGGACGCGCCGCCGAGTA
GCGAAGATAAGAGACGAGTGGGCCT-GATTTTTCTATCAGCAGAGAAAAACCTGGGCCACTGATCGGCAATAGAATCGAG
AACCTTCCC--TTCGCCGCCTAATCTGC---ACT-CACTACAGACTACACCGGCCCAGAGGA------------------
-----------CTCCTGCAAACCCATCAGCGTCACCCGTGCTCTGCTTCAAAGGAATGGCGAGCCCAATGGTGGGAACCC
CAATCCGCCTCAGCAGCCTCAGATACGCCCCTCCTTCCCCAGCACCCAGGGGACGATTCGTGGCGGCGAGGGTGAGGGCG
TCGGCGGAGGCGATGGCGACGGCGACGGAGAAGCTCGGCGTCAGGGTGGAGCGCAACCCGGCCGAGTCCCGCCTCTCCGA
GCTCGGCGTCCGCCAGTGGCCCAAGTAAGCCCCGCCCGATCTCTTCCGCTTAGATCTTTCTTTCTTGTCGGGGCATCGAT
GGTGATGCGATGGCGCC----TGCGTGCAGGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACCTACTCGGCCAAGGAGA
CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTACCCGGACGGCGAGGAGGGGTTCGTGGAGATCGCGGCGGGGGACCTG
GTGGTGTTCCCCAAGGGCATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGCCTGC
ACCTACAGCGCTGCACG----GCCGGCCGCTGTGCTGCCTGCTGCCGTTGCTAGCACTAGACTGAGGTATTTGTAGCCGG
ATTGTGTTGTGCTCGAGTGGATCTCTTCTCTTGTGGTGAAATAAAAACGCCAGGCTA--GGATTGTGTTTGTCCC-----
----------------------GGGCTCTGGAAGCAAACCGTGTATCGTCCGTATTTTGTTTCTTACTAGTAAGTACTAA
TTGCCCGTGCG-TTGTAACTGGGGCACATAGACATGTCGCTGAAA-CTTCAGTGCGTTCTTTACATAATAACTGTGATTT
AACA-TAAAAAGGCTTTTTACCATCTATATCCTTCCAATATGCAAAACAATTA---------GAATTGATACATACCATG
CCAATTCAATTAGTAAAGCTCGTGTCTAATTTCACAAGCTAATGGCCAAGGAGCTGGAAATTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATCAAGGGAAAACCGTTGTCTAACTCTTCACCTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2B_458
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TAATATGGAGGAATTTTCATTAA
ATAGGGTAAA----------------------------------------------------------------------
------------------------------------------------ACTTGTTACAAACGTGAAACTCATAAATAATG
AAAATAACCTTTTTATTTTAGCAATCATGCAACCTTTAT----TGACTCCCATAGATGTTTAGGGGTATAGTTACATGAT
CATGAGGCACTC--------------------AAATCTAAAAAGAGAGCTTGTCTAGCT---------------------
----------AAATTTTACGAGCTTCCACGTTACTCTGCCTGCTTTTCAT--------------------------ATGG
GTATAATATAACAGCACTCCTCAAAATCCTTCTTTAAC------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTTTTTAGGAGGTCGCGCTGCCGAGTG
GCGAAGATAAGAGACGAGTGGGCCTAGATTTTTGTATCAGTAGAGAAAAACCTGGGCCACTGATCGGC-----AATCGAG
AACCTTCCCCCTTCGGCGCCTAATCTGCTGCACTGCACTGCGGACTACACCGGCCCATAGAACTCCTGCAAACCCATCAG
CATCACCCGTGCTCTG--------------------------------CAAAGGAATGGCGAGCCCAATGGTGGCAACCC
CAATCCGCCTCAGCAGCCTCAGATACGCCCCTCCTTCCCCAGCACCCAGAGGACGGTTCGTGGCGGCGAGGGTGAGGGCG
TCGGCGGAGGCGATGG------CGACGGAGAAGCTCGGCGTCAGGGTGGAGCGCAACCCGGCCGAGTCCCGCCTCTCCGA
GCTCGGCGTCCGCCAGTGGCCCAAGTAAGCCCCGCCCAATCTCTTCCGCTTAGTAGA-TCTTTCTTATCGGTTCATCGAT
GGTGATGCGGTGGCGCCTGCGTGCTTGTAGGTGGGGGTGCGATAAGAGCAAGTTCCCGTGGACCTACTCGGCCAAGGAGA
CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTACCCGGACGGTGAGGAGGGGTTCGTGGAGATCGCGGCGGGGGACCTG
GTGGTCTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCACCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGCCTGC
ACCTACAGCGCTGCACGCACGGCCGGCCGCTATGCTGCCTGCTGCCGCTACTAGCACTAGACTGAGGTATTTGTAGCCGG
ATTATGTTGTGCTCGAGTG--TCTCTTCTCTTGTGGTGGAATAAAAAGACCAGACTAGTGGATTGTGTTTGTCCAACCTT
CTCTGTGGTGTGTTCATGGCCTGGGCTCTGGAAGCAAACTGTGCATCGTCCGTATTTTGTTTCTTAGTAAG------TAA
TTGCCCGTGCGATTGCAACTGGGGTACATAGACATGTCGCTAAAA-TTTCATTGAGTTCTTTACATAATAACTGTGTTTT
AACATTAAAAAGGCTCTTTACCATCTATATC-TCCCAATATGCAAAACAATTAGAATTGAGCGAATTGATACATACCATG
CCGATTCAATTAGTAAAGCCCATGTCTAATTTCAGAAGCTAATGGTCAAGGAGCTGGCAATTTTGTTTCTGAAAAGAAAT
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAACTCTTCACCTGCTTCTCTCTTACACTTAGCTCTGAAGTCGCCAC
ATCCTTCCTCT-AAGGCCCGTGCAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGCCAAATATTCAGAAACCTGACTGTTATCTGAAAACACGGAATTCACCAAGAGTATTG
GCAACGAACAAAACACGGAATTCACCAAGAGTATTGGCAACGAACAAAACACGGAATTCACCAAGAGTATTGGCAACGAA
CATGATGATAATTTGAAGTATAAAGTATACAAGAATATAACACGCATGTCTCACATAATTTGCAGTTCCCAACTGAGCCG
GGGCACAACAAACTAGA---------------------------------------------------------------
----------------------------------------------------ATTACCTTTGCACAATGGCACAATACCA
TACTTCGTGGTAACAACTAACAACCTTATCGTTTTGGCCGAGATATTATAACCACTTTGGATCATTCCCTCTTAACAAAA
ATGCTAATGATCTTTCTCTGACTATAGTATCCTCACAAATTACTATTTCAGTTTTGCTAAAGAATATCTAGATGTGTCAT
AAATATTGCACATCTAAGTCCTATGCCATTGATCTTACGTGGAGATTCGTGTGGGTATTTTCTTTTTTCTTTTT----
>chr7B_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GCG-TTGCAAC-GGGGCACATAGACGTGTCACTAAAA-TTTCAGTGAGTTCTTTACATAATAACCG--ATTT
AACA-T-AAAAGGCTCTTTACCATCTATATCCTCCCAATATGCAAACCAAGTA---------GAATTGATACATACCATC
GCAATTCAATTAGTGAAGCTCATGTCTAATTTCAGAAGCTAATGGCCAAGGAGCTGGCAATTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAGCTCTTCACCCGCTTCTCTCTGACACTTAGCTACATAGTCGCCAC
ATCCT----CTGAAGTCATGTGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACAAAATATTCAGAAACCTTGCTGTTATCTGGAAACACAGGATTCAACAAGAGTATTG
GTTAT------------------------------------------------------------------------GAA
CATGCTGATAGTTTCAAGTATAATGTATACAAGCATATAACTCGCATGGCTCACATAATTTGCAATTCTCAACTGAGCCG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------TTTACCTCTGGACAATGGCACAATGCCA
TACTTTGTGGTAACAACTAAAAACTTTATCGTTTTGGCTGAGATATTGCGACCACTTTGGATCATTCCCTTTTAACAAAA
ATGCTAGTGATCTTTCTCTGA-----------------------------------------------------------
------------------------------------------------------------------------------
>chr3A_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GCG-TTGCAAC-GGGGCACATAGACGTGTCGCTAAAA-TTTCAGTGAGTTCTTTACATAATAACCG--ATTT
AACA-T-AAAAGGCTCTTTACCATCTATATCCTCCCAATATGCAAACCAAGTA---------GAATTGATACATACCATC
GCAATTCAATTAGTGAAGCTCATGTCTAATTTCAGAAGCTAATGGCCAAGGAGCTGACAATTTTGTTTATGAAGAGAAAT
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAGCTCTTCACCCGCTTCTCTCTGACACTTAGCTACATAGTCGCCAC
ATCCT----CTGAAGTCATGTGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACAAAATATTCAGAAACCTTGCTGTTATCTGGAAACACAGGATTCAACAAGAGTATTG
GTTAT------------------------------------------------------------------------GAA
CATGCTGATAGTTTCAAGTATAACGTATACAAGCATATAACTCGCATGGCTCACATAATTTGCAATTCTCAACTGAGCCG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------TTTACCTTTGGACAATGGCACAATGCCA
TACTTTGTGGTAACAACTAAAAACTTTATCGTTTTGGCTGAGATATTGCGACCACTTTGGATCATTCCCTTTTAACAAAA
ATGCTAGTGATCTTTCTCTGA-----------------------------------------------------------
------------------------------------------------------------------------------
>chr6B_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GCA-TTGCAAC-AGGGCACATAGACATG----TAAAA-ATTTAGCGAGTTCTTTACACAATAATCGTGATTT
AACA-TAAAAAGGCTCTTTACCATCTATATCCTCTCAATATACAAAACAATTA---------GAATTGATACATACCATG
CCAATTGAATTAGTAAAGATTATGTCTAATGTCAGAAGCTAATGGCCAAGGAGCTGGCAATTTTGTTTCTAAAGAGAAAC
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAACTCTTCACCTGCTTCTCTCTGACACTTAGCTCTGAAGTCGCCAC
ATCCTTCCTCT-AAGGCCCGTGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGCAAAATATTCAGAAACCTTGGTGTTATCTGAAAACACAGGATTCACCAAGAGTATTG
GCGAT------------------------------------------------------------------------GAA
CATGATGATAGTTTAAAGTATAGAGTATACAAGCATATAACTCGCATGCCTCACATAATTTGTAGTTCTTAACTGAGCCG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------ATTACCTTTGGACAATGACACAATGCCA
TACTTTTTGGTCACAACTAACAACTTTATCGTTTTGGCCGAGATATTATGACCACTTTGGATCATTCCCTTTTAACAAAA
ATGTTAGTGATCTTTCTCTGA-----------------------------------------------------------
------------------------------------------------------------------------------
>chr5B_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GTG-TTGCAAC-GGGGCACATAGACATGTTGCTAAAA-TTTCAGTGAGTTCTTTACATAATAACCG--ATTT
AACA-T-AAAAGGCTCTTTACCATCTATATCCTCCCAATATGCAAACCAAGTA---------GAATTGATACATACCATC
GCAATTCAATTAGTGAAGCTCATGTCTAATTTCAGAAGCTAATGGCCAAGGAGCTGACAATTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATCAGGGAAAAACATTTGTCTAGCTCTTCACCCGCTTCTCTCTGACACTTAGCTACATAGTCGCCAC
ATCCT----CTGAAGTCATGTGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACAAAATATTCAGAAACCTTGCTGTTATCTGGAAACATAGGATTCAACAAGAGTATTG
GTTAT------------------------------------------------------------------------GAA
CATGCTGATAGTTTCAAGTATAACGTATACAAGCATATAACTCGCATGGCTCACATAATTTGCAATTCTCAACTGAGCCG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------TTTACCTTTGGACAATGGCACAATGCCA
TACTTTGTGGTAACAACTAAAAACTTTAACGTTTTGGCTGAGATATTGCGACCACTTTGGATCATTCCCTTTTAACAAAA
ATGCTAGTGATCTTTCTCTGA-----------------------------------------------------------
------------------------------------------------------------------------------
>chr5B_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GCG-TTGCAAC-GGGGCACATAGACGTGTCGCTAAAA-TTTCAGCGAGTTCTTTACATAATAACCA--ATTT
AACA-TAAAAAGGCTCTTTACCATCTATATCCTCCCAATATGCAAACCAAGTA---------GAATTGATACATACCATG
GCAATCCAATTAGTGAAGCTCATGTCTAATTTCAGAAGCTAATGGCCAAGGAGCTGACAATTTTGTTTCTGAAGATAAAT
GCATTGCATGTAGATCAGGGAAAAACCTTTGTCTAGCTCTTCACCCGCTTCTCTCTGACACTTATCTCCATAGTCGCCAC
ATCCTTCCTCTGAAGTCATGTGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACAAAATATTCAGAAACCTTGCTGTTATCTGGAAACACATGATTCACCAAGAGTATAG
GTTAT------------------------------------------------------------------------GAA
CATGCTGATAGTTTCAAGTATAAAGTATACAAACATATAACTCGCATGGCTCACATAATTTGCAATTCTCAACTGAGCCG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------GTTACCTTTGGACAATGGCACAATGCCA
TACTTTGTGGTAACAACTAAAAACTTTATCGTTTTGGCTGAGATATTACGACCACTTTCGATCATTCCCTTTTAACAAAA
ATGCTAGTGATCTTTCTCTGA-----------------------------------------------------------
------------------------------------------------------------------------------
>chr4A_1681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------T------------------
--------GCG-TTGCAAC-GGGGCACATAGACATG----TAAAA-ATTTAGTGAGTTCTTTACACAATAACCGTGATTT
AACA-TAAAAAGGCTCTTTACCATCTATATCCTCCCAATATGCAAACCAATTGG--------------------------
--------ATTAGTAAAGCTTATGTCTAATTTCAGAAGCTAATGGACAAGGACCTGGCAATTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATCAGGGAAGAACTTTTGTCTAACTCTTCACCCACTTCTCTCTGACACTTAGCTCTGAAGTCGCCAC
ATCCTTCCTCT-AAGGCCCATGTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACAAAATATTCAGAAACCTTGTTGTTATCTGAAAACATGGGATTCACCAAGAGTATTG
GCAAT------------------------------------------------------------------------GAA
CATGATGATAGTTTGAACTATAGAGTATAAAAGCATATAACTCGCATGCCTCACATAATTTGCAGTTCTCAACTGAGCTG
GGGCACAACAAATTAGA---------------------------------------------------------------
----------------------------------------------------ATTACCTTTGGACAATGACACAATGCCA
TACTTTGTGGTCACAACTAACAACTTTATCGGTTTGGCCGAGATATTATGACCACTTTGGACCATTCCCTCTT-----AA
CTGCTAGTGATCTTTCTCTGATTGTAGTAT--------------------------------------------------
------------------------------------------------------------------------------
>chr5D_1757
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TAAAAAGGCTCTTTACCATCTATATCCTCCCAATATGGAAACCAATTA---------GAATTGTGTCGTACCATG
ACAACTGAATTAGTAAAGCTTATGTCTAATTTCACAAGCTAATGGCCAAGGAGCTGGCAGTTTTGTTTCTGAAGAGAAAT
GCATTGCATGTAGATTAGGGAAAAACCTTTGTCTAACTCTTCACCCGCTTCTCTCTTACACTTAGCTCTGAAGTTGCCAC
ATCCTTCCTCT-AATTCCCGTGTATCGCAAAACAAAACAATGTACATGGTAGGAAAGAATAACACAACCTGAATTATAAG
GCATAAAGGATCTTGCTGACAGCATACTCCCGATCCAGTGGTTAATTTAGCATAACAAAGCAACACAATGGATGTGGTAG
GAAAGAATACAACAACCTAAATTATAAGGCATAAAGGATCTCGCTGACAGCGTCAAGTGGGCACAATGAAAACTGAATCT
TCATAATTAGTGATTGAGGCCAAATCCTTAGAATACATTTGGCAGTGCTACTTACGCAAAAGTGGCAATTTTAATCTACC
TGGCCCTGATGCCTACCTCAATTTCAACAAATTATTATCAAGATTCATGTTAAACTTAATTTAGAACTATACCATATGAA
AAGTGGAAGAGGCAGGAGACTAAGGTTAATTGCCCATCATGTAAATCCATGTAAAATTTATAGAGTGTGTGTGTTCATAT
TATTTGGCAAAACCAATCAAATAGATACAACACAAGCTAACTCTTACAGGTTAATCAAAAGCTTACACAACCATGTTTCG
ACAAAATGAAGAGAAATTCCAATTGGGCAGCATGAAAACAGATGAAAGCATGCAGTTTAGTGATACTGATGTGGTGGATG
ATTGCATATGGCCAAGACATTAATAGAAGGGAAAGCGTTTTCTACAGAACACACATAACATATTTAGTACTTCTATTCTA
TTACCACGACTTCCATCTAAATGTGCTCTTACATCCCAAATTGCACAATCAATTTGCATTGCACTAATAGTAAAATGTGC
TTCAATTGTTCGGCATTATATCCCTATTAATTAACCCATAAAAAATTATGACGCAAGGCAATCGTTTCAGTCGTAGCAAG
ATTGTGATCAATAGTGTCATTTAATGGCAAAAATAGAGTAGCATCTCACAGGGATCCTTGCTCTCCTTACATGAACATGC
ACATAACCAGGTAAACAACACCACATGTCATGATTCAGAGGCAAATGCATCAGACCAAAAAATGTTTAGAAGCACTTAGC
AAATGAGTGGCATCACCTGGATGAATATAGTTTATTTCTTCTGACTTGGTGTTAAATGGACTACTTGCACTGTAAGTTAG
ATCTAGAGAGCACGATCTGATCGCAAAATATTCAGAAACCTTGCTGTTATCTGAAAACACAGGATTCACCATGACTATTG
GCAAT------------------------------------------------------------------------GAA
CATGATGATAGTTTGAAGTATAGAGTATACAAGCATATAACTCACAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSS-------------------S------------------------------------
----S----------------------------------------------S--------------------------S-
S----------------------SSSSSSSS---S----S-----S---------SSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------S--S-
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------S---------------------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------------S------------------------------------
----------S---------------------------S-S--SSS----------------------------------
----------------S--SS------SSSSSSS----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
---------------------------------------------------------------------------S--S-
---------------------------------------------------------------------------S----
SS-----------------S------------------------------------------------------------
------------------------------------------------------------S--------S----S-----
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
------------------------------------------------------S------------S------------
--------SSSSSSSS----------------------------------------------------------------
-------------------S-----------------S--S----S--------------------S-------------
----------S-------------------------------------------------------SS------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----S----S-----------------------------------------
S-------------------------------------------------------------------------------
----------------------------S------------------S--------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
--------------------------------------------------------------------------------
----------------------SS-------------------------------------S------------------
---------------------S---SS----------S----------------------------SSS----SSSSS
>forward_446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCACACACACACACACACAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2383
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CAGCTCTGAAGTCGCCAC
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
