>input_sequence_78627
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-------------------------------------------ATGGCCTCCCAGCTCTCCGCCATGACCTCCGTGCCGC
AGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATAGCCACGCTGCCGTCCTTGAGGAAGA---GGTCCCAGGGC
ATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGATCACACACATAGTACTACGTATACATGCGAATGGGTCA
GGCATTGATTGTTTATTTGGTTAAAATAATTACTACTATACGCGGATGCAGATCATGGTGACGACGACGACCCTGATGCT
GTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCTACGGCGGGGCTCAAGTTGGAGGCGCGCGAGTCCG
GGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACACGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTC
GGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAG--------------------------
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-------------------------------------------
>chr2A_1_TraesCS2A01G252600
TGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGTCAGCTTGTTTGATCCTTTTGTTCTTCT--
-AAAGAACCAACACACAAGAGCTAGTGGCCCTTGTGACTCTG-TTTTTTTTACATGTCTC--------------------
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-------------------------------------------------------------------ATGAAATGTATAT
AGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCATG-CCATGCCGTCATAATATCAGGTCAT
ATTGTTGATGATCAATCATTCCTCTTTATCGTAGTGATGTCAGGATTGGTATTCGGTGTGCTCTGAGGTACTACCGTCAT
GGT---GTATGTGACATTACGACT-TGGAAGACGCATCACACACTTTATTTTCATTGGCAAATTCGTGTGTGCCACGTAA
AACCAAGTTTTTTTTGTTTTGAATTTGCAGGTTGCAAATATACTCCCTTCGGTCCTTTTTACTCCGCATATTAGAGTTGT
GTCAAGTCAAATTTTGTAAACTTTGACTAAATTTATATTAAAAAATAACAACATCTACAATACCAAATATATATACCATG
AAACTACATTTCATAATGAATCCAATAATATTAATTTGACATTGTGAATGTTGATACTTTTTTCTATAAATTTAGTTAAA
ATAGACATGCTTTGACTTTGAATAAAACTTATATACAGACTAAAAAGGATCGGAGGAAGTAGTTATTTATT---------
--------------------------------------------------------------------------------
-----------------------------------TATTTAACAGTAACGAAAAGAGCTA--------------------
----------------------------------------------------------------------ATTATTTTAC
TGAACCGTTTCATGCCGGTGATGC-------------CGTCAGCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACG
GTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCGGTGGCAAGGATCCGAAACCTATCCT
CGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCGGCTCCACAAGATTTAAGAAAGGAGCTCGTTGAGCATTG
CACCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGCCATGGCCTCCCAGCTCTCCGCCATGACCTCCGTGCCGC
AGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATAGCCACGCTGCCGTCCTTGAGGAAGA---GGTCCCAGGGC
ATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGATCACACACATAGTACTACGTATACATGCGAATGGGTCA
GGCATTGATTGTTTATTTGGTTAAAATAATTACTACTATACGCGGATGCAGATCATGGTGACGACGACGACCCTGATGCT
GTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCTACGGCGGGGCTCAAGTTGGAGGCGCGCGAGTCCG
GGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACACGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTC
GGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAGAACCTTCCTTTTCCGTCCATAGCTGT
TCTGCATTCGCATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTCGTGATTTGATCATGTGGTGTAGTACA---
-ATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCGCCGCGCCGGTGTGGCAACTCCTTCATCCCATGCGTTTTTC
ATCATCTATAGTATCTTTCACATGGTGAAGATCGTCCTGTGCTATAGAAAGAACAACATAGAGTCCAAAAACTAAATAAG
TACTCCCTCTGTGAAGGAATATAAAATTGTTTAAATC-------------ACTACTTAGACCAGTTAATGATCTAAACGA
TCTTATATTTCTT--CACAGAGAGTAACAATAAAAGTGCAAAACAACTCGTGTCGCCCCCTCTCACGGCTTGA-GGAGAA
ACCAGCGACGCCTCCTCTTCCACCCC--TCCCCTTTCTCCTCCCGCCGTCACCAGAGGTGCCGCCGCCGAAGCTCGGCTG
GCTTTGAGGAGCTTCTTTGGCCGTGTGGCGTGGTAGTGGCTGCTACCCGGAGGGGTCG-CTCGGTGCGGGTGTCGTCGGC
TGGTGTTAGAGTTGTGCTGAATATTGTGTACAAGGTAGGTTATAGTTAGACTCTGCGTCGTATGGTGTGTAGACAGAGTA
TGTTGTGGTGTCATAGTAGGACTTTTGTATCTTATAGACACACGAAGTA-------------------------------
-----------------------------------------------------ACAACCTATGCCAACATAACAGGACAT
ACATGCAGGGGAGCTGGTGTGTGGTATTGTAGCGGTATCATGGAGATGAGCATCCATAGTCAGGCTCAGGGATGTAGCCG
ATGTTCGGTGAACCTTGTTAGCAAATCTCACTGTCGTGCCTCGTGTGA-TTGCTTAGTCATCAGTGGATCGCCTCAAATT
ATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGGTCGCAGATTGTTGATCTAGAGGAACGGTGCCAATCTTGTATG
GTTCGCTTGGAAGCAGGAGAGAAGA-TCATATCACGTTCAGAG
>chr2D_1
TGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATGTACAT
AGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAAATACAGCTTGCGCATG-CCGTGCTGTTATAATATCAGGTCAT
GTTGTTGATGATCAATCATTC-TCATTATCACAGTGATGCCAGGATGGGTATTCAGTGTGGA-----GTACTACCGTCAT
GGT---GTATGTGACCTTACAACTTTGGAAGATGCATCACAC--TTTATTTTCATTGGCAAATTCGTGCATGCCACGTAA
AACCAAGA-TTTTTTGTTTTGAATTTGCAGGTTGCAAATATA--------------------------------------
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-------------------------------------------------------------GTTATTTATT---------
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-----------------------------------TATTTAACAGCAACGAAAAGAGCTA--------------------
---------------------------------------------------------------------TATTATTTTAC
TGAACCGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCAGCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACG
GTGGTGTTTCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCGGTGGCAAGGATCCGAAACCTATCCT
CGAGTGGCCGCCGCTCGCCACGCGATCCCCCGTGTGGCTCCCGCTCCACAAGATTTAAGAAAGGAACTCGTTGAGCATTG
CACCTGAGCAATCGCAGCATCCACAACACACGAATCCGCAGCCATGGCTTCCCAGCTCTCCGCCATGACCACCGTGCCGC
AGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGGCCACGCTGCCGTCCTTGAGGAGGAAGAGGTCTCAGGGC
ATCCGCTGCGACTACATCGGCTCCTCCACCAACATCGTAAGATCACACGCA---TACTACGTATACATGCGAATGAGTCA
GGCATTGATTGTTTGGTTCGTTGACATAATTACTAC--TATGCGGATGCAGATCATGGTGACGACGACGACCCTGATGCT
GTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACGGCGGGGCTCAAGCTGGAGGCGCGCGAGTCCG
GGCTGCAGACGGGCGACCCGGCCGGCTTCACGCTCGCCGACACGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTC
GGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTAGACCAGATCATCGGCTAGAACCTTCCTTTTCCGTCGATAGCTGT
TCTGCATCCACATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTTGTGATTTGATGATGTGGTGTAGTACA---
-ATGTATGTGTATGCATCTTTGGTTCAGCGGGACGTACCGCCGCGCCGGTGTGGCAACTGCTTCATCCCATGCGTTTTTC
ATCATCTATAGTATCTTTCACACGGTGAAGATCGTCTTGTGCTATAGAAAGAGCAACATAGAGTCCAAAAACTAAATTAG
TACTCCCTCCGTGAAGAAATATAAGATCGTTTAGATT-------------ACTACTTAGATCAGTTAGTGATCT------
---------TCTTTACAGAGAGAGTAACAATAAAAGCGCAAAATAACCTGCGTCGCCTCCTCTCACGGCTCGAGGGAGAA
ACCAGCGACGCCTCCTCTTCCACCCCCCTCCCCTTCCTCCCCCCGCCGCCACCAGAGGTGTTGCCGACGAATCTCGGCTG
ACTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGTGGCTGCTTCCCGGAGGGGTCG-CCTCGGTGCGGCGTCGTCGAC
CGGCGTTAGAGTTGTGCCGAATATTATGTACGAGGTAGTTTATAGTTAGACTCTGTGTCGTACATCGTGTAGACAGGGTA
TGTCGTGGTGCCCTAGTAGGACTCTTGTATCCTATAGACACACGAAGTA-------------------------------
-----------------------------------------------------ACAACCTATGCCAACATAACATGACAT
ACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATGGAGAGGAGCATCCATAGTCAGGCTCAGGGATGTAGCCG
ATATTCGGTGAACCTCATTAGCAAATCTCCGTGTCGTGCCTCGTGTGATTTGCTTAGTTATCAGTGGATCGCCTCAAATT
ATTCTAACAAGTGGTATCATGAGCAAGTTTCAAGGAGCTCGTAGATTATTGATCTAGAGGAAGGGTGCCAATTTCGTATG
GTTCACTTGGAAGCAGGAGAGAAG-------------------
>chr2B_1
TGTTGCAATTTGTTGGTTTGTAGTGTGTATTTTGTAGGATTTGTAGCGTGCCAGCTTGTGTGATCCTTTTGTTCTTCTTC
TAAAGAACCAACACATAAGAGCTAGTGGCCCTTGTGACTCTGTTTTTTTTTACATTTCTC--------------------
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-------------------------------------------------------------------ATGAAATGTACAT
AGGGTTTTCAGAGTGTGAGAGAGTGGTGTTGTATTCAATTACAGCTTGCGCATGGCCATGCCGTCATAATATCAGGTCAT
ATTATTGATGATCAATCATTCCTCTTTATCACAGTGATGTCAGGATTGGTATTCAGTGTGCTCTGAGGTACTACCGTCAT
GGTTGTGTATGTGACCTTACAACT-TGGAAGATGCGTCACACACTTTAGTTTCATTGGCAAATTCGTGCGTGCCACGTAA
AACCAAGT-TTTTTTGTTTTGGATTTGCAGGTTGCAAATATA--------------------------------------
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-------------------------------------------------------------GTTATTTATTTACTCCCCC
GTCCTAAAATTCTTGTCTTAAATTTGTCTAAATACGGATATATCAAGTCATGTTTTAGTATTAGATACATCCGTATCTAG
ACGAATTCAAGACAAGAATTTTGGAACGGGGGGAGTATTTAACAGCAACGAAAAGAGCTACTCCCTTCTTTTCATAATAT
AAGAGCGTTTTTGACACTACACTAGTGTTAAAATATAAAAAGCGCTCTTATAGTATGGGACGGAGGGAGTATTATTTTAC
TGAACTGTTTCATGCCGGTGATGCTTGTCAGTCGCCACGTCAGCAAAAGAATAGCGACAGACGGAGAGGAGCTAGACACG
GTGGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACGTCGGTTGCAAGGATCCGAAACCTATCCT
CGAGTGGCCGCCGTTCACCACGCGATTCCCCGTGTGGCTCCCGCTCCACAAGATTTAAGAAAGGAGCTCGTTCAGCATTG
CGCCTGAGCAATCGCAGCATCCACAGCACACAAATCCGCAGCCATGGCTTCCCAGCTCTCCGCCATGACCTCCGTGCCGC
AGTTCCACGGCCTCAGGAGCTACTCCTCGCCCAGGTCCATGGCGACGCTGCCGTCCTTGAGGAAGA---GGTCCCAGGGC
ATCCGCTGCGACTACATCGGCTCCTCCACCAATATCGTAAGATCACACACA---TACTACGTATACATGCGAATGAGTCA
GGCATTGATTGTTTGGTTCGTTGACATAATTACTACCATATGCGGATGCAGATCATGGTGACCACGACGACCCTGATGCT
GTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACGGCGGGGCTCAAGCTGGAGGCGCGCGAGTCCG
GGCTGCAGACGGGCGACCCGGCCGGCTTCACTCTCGCCGACACGCTCGCATGCGGCTCCTTCGGCCACATCTTGGGCGTC
GGCATCGTGCTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAGAACCTTCCTTTTCCGTCGATAGCTGT
TCTGCATCCGCATCGCGCGCTCCATGTAGTGGATCAATTAATGCTCCCTTTGTGATTTGATGATGTGGTGTAGTACAATG
TATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCGCCGCGCCGGTGTGGCAACTGCTTCATCCCATGCGTTTTTC
ATCATCTATAGTATCTTTCACATGGTGAAGATCGACTTGTGCTATAGAAAGAGCAACATAAAGTCCAAAAACTAAATTAG
TACTCCCACTGTGAAGAAATATAAGATCGTTTACATCAGTAATTGATCTCACTACTTAGATCAGTTAGTGATCTAAACTA
TCTTATATTTCTTTATAGAGAGAGTAACAATAAAAGCGCAAAATAACCCGCGTAGCCTCCTCTCACGGCTCGAGGCC---
-----------------------------CCCCTTCCTCACCCCGCCGCCACCA-AGGTGCCGCCGACGAAGCTCGACTG
GCTTTGAGGAGCTTCTTTGGCCGTGTGGCGCGGTAGCGGCTGCTTCCCTAAGGGGTCGCCTCGGTGCGGGCGTCGTCGGC
TGGCGTTAGAGTCGTGC---ATATTGTGTACAAGGTAGGTTATAGTTAGACTCTGCATGGTACGATGTGTAGACAGGGTA
TGTTGTGGTGTCCTAGTAGGACTCTTGTATCCTATAAATAGACGAAGTACTCCCTCTGTTCCATATTACTCGTCGCTGAT
TTAGTACAACTTTGTACTAAATCAGTGACGAGTTATATGGAACGGAGGGAGTAACAACCTATGCCAACATAACAGGACAT
ACACGCAGGGGAGCCGGTGTGTGGTATTGTAGCGGTATCATGGAGAGGAGCATCCATAGTCAAGCCCAGGAATTTAGCCG
ATGTTCGGTGAACCTCGTTAGCAAATCTAAGTGCCGTGTCTCGTGTGA-TTGCTTAGTCATCAGTGAATCGCCTCAAATT
ATTCTAACAAGTGGTATCATGAGTAAGTTTCAAGGAGGTCGT-GATTGTAGATCTAGAGGAAGGGTGCCAATTTCGTATG
GTTCGCTTGGAAGCAGGAGAGGAGATTCATATCGCGTTCAGAG
>SNPs
--------------------------------------------------S--------S--------------------
---------------S---------------------------------------S------------------------
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-----------------------------------------------------------------------------S--
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------------------------------SS----------------------S-------------------------
---------------S----S-----------S-----------------------------------S-----------
--------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
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---------------------------------------------S----------------------------------
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-----------------------------------------S--------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------------SSS---------------------S----
--------------SS--S---S-S-----------S---S---------------------------------------
---------------------------------------------S---------------S------------------
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-----------------------------------------------------------------------S--------
-------S------------------------------------------S----------S------------------
-----------------------------------------------------------S--------------------
------------------------------------S---------------S------------------------S--
----------------S-------S--S-----S--------------------------S------S----------S-
-----------------S------------------S------S---S--S------S------------S---------
-----------------------------------S----S-------S-----------------S-------------
------------------------------S-------------S-------------------------S---------
---S-------------S--------------------------------------------S-S-----------S---
------------S----------S-------S------------------------------------------------
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---S----------S-------------------------------S---------------------------------
---------------S--------------S-------------------------------------------------
-----------------------------------------S--------------------S---------S-S-----
---------------------------------S---------
>forward_628
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------------------------------------------------TCGGTCCTTTTTACTCCGCA------------
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>reverse_2277
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------------------------------------TGCAAAACAACTCGTGTCGC------------------------
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