>input_sequence_78600
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------------ATGTCCACGGCGCCGCCGCAGCCGAACCA---GCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGT
GCGGCGCGTGTTCGACCTCTTCGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCC
TGGGCCTCGCCCTGGGCGAGCAGGCGGACGGGCTCCTCGCCACCTACGTCGCGCCC---------GGCATGCCCGGCCTG
CGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGCCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGC
CTTCGCCGTGTTCGACGAGAACGGCGACGGGTACATCTCCGCCGCCGAGCTGCAGGCCGTCCTGGCGCGGATGGGGGTGC
CGGAGGCGGCGTGCATGGCGCGGGTGCGCGACATGATCGCCGCGCATGATCGGGACAGCGATGGCCGCGTCGACTTCCAT
GAGTTCAAGGCCATGATGGCTGCCGGTATGTAA-----------------------------------------------
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>chr5B_1_TraesCS5B01G342800
ATCCCTGTGAGCACCTTCAAAAGACTGAGCCGGCATATCATCTTGAGATTTACAAAGTCACCGTAGGCGCCTCGCCGTCG
ATGGGAACGTCTCCTCCCACTGAAAGCATGTCATCGGAAATCCTGAAATAAATTCAAGAATAATGCGAGCAGCAGGACCT
GAACACTGGGGGTGGACATGTTTTTGGGTGAGATGGAATGGCGAACGTGTAAGTGGCTACGGTCCGGGCGTCGACAAAGC
CCCATTGATTTGCGTCCGGTTTGCTGGGAAATGGACGTCTGGACGATCCACGTACTGATAGAGTATCGCGTTGGATTGCA
AAATCCGTCCGGACCGCTATGTTA---------------GTTTGAAGGTCCGTGTTGAAGATGTACATAAAGATTGATTT
GCAGGAAAAAGACGGCACCTATTGTTGGTTGGTAGTTGTAGCCTGGTAGGAGAAACTAACTATTGTTGATTTGAAAAACA
GTCATTTCCAAAATAGACAGATCACTATTC-TCATCTTTTAACGGTATAAAA---GGAGCCCATTTGCAGG-----TCC-
------------ATAAGTCCCGTTTTATTTTTCC----------TTTTCCTCCTTCTCACCCGTTTCAGCGTCAAGACCG
TGTGCTTGCCGCGTTGACAGCTTACAACTTGCATCACCCACGACAAAGCTCCGTCGATAACGGTTGGAGCCGGCGTATAC
AGCAAGCAAGTACCATATGTCACAACGCGTTGCGTGTATAAACAATCGACTGGATCAGTTTAATTACGTACTCC-TACTT
TTGATTGTGGAATAGGAAATGATGACCTCCCCAGACTACAAGGTTGACATCGATAGGAGCCCATCGTATTTGGTCAAGTC
GTTCTCTGTGGAGCGCCGTACGTCTATCCTTTTCATCTGGCAAACAATGGCTGGCTGGCTTATATATACGCCCCCTGGCA
ACTTCAGTCGCTCTCACAAGCAAACAAACACTCGCAAT----CCTCCCAAGCTTTACGAACTTCTTCTTCTTGCGTATAG
CACTAGCACGCAATGTCCACGGCGCCGCCGCAGCCGAACCA---GCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGT
GCGGCGCGTGTTCGACCTCTTCGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCC
TGGGCCTCGCCCTGGGCGAGCAGGCGGACGGGCTCCTCGCCACCTACGTCGCGCCC---------GGCATGCCCGGCCTG
CGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGCCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGC
CTTCGCCGTGTTCGACGAGAACGGCGACGGGTACATCTCCGCCGCCGAGCTGCAGGCCGTCCTGGCGCGGATGGGGGTGC
CGGAGGCGGCGTGCATGGCGCGGGTGCGCGACATGATCGCCGCGCATGATCGGGACAGCGATGGCCGCGTCGACTTCCAT
GAGTTCAAGGCCATGATGGCTGCCGGTATGTAAATGTAATGGCTTAGCTAAAC---GAATCTGGTTTCTCGTTCCAAGTG
ATG-----------TACTAC------------------------------------------------------------
-----------------------------------------------------------TACGTGCTAGCTATACGTACA
AGCTAGTCA-GTCATGGTTTTTCTTTTCTTTTTTTGGAGGCCAAGCTAATCTGTCATGTGAATACTGCATAACTGTCAAA
AA---AATGTGCATAGTCATGTACCTTTTGTAAGCAACGTCTCCTGTAGCCTCTGGATTTTTCCTCTCTGTTTCAGGTTG
TGTGTGTAGTTCCTTTTCATTTTTTTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTACAAAAG
GAAATAGAATTATTCCCCACAAAAAGAAACATAATTTCTTGTCTGGCAGGTTTAAAAGGTTTTCACAGTTCTTAAAAAAA
ATCAATGTAGGTTCTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTAGAAGTGCCCACGTCTTTAAAATAT
ATTTTTGTAGTTTTAGAAAAGTGTTCATACATTAAAAATGATTTTTA-TACTTTTCAATAAATTATGTATACTTCCTTCA
AACAAAAATAAGTGGA-AAAATGGTAAACATCCAAAAAAATAACATAGATATGAAA-AAGAAAAGAAAAACACAACAAGA
AAGAAGGAATGAAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAACATTTATATATTATATAAAA----AGG
CTTTCTTCAAAAAATAGAAAAAGGAGACAAGAAAATG-TTTATATATTTTATGAAAAGGCTTTATTGAAAATGACAAA-A
GA--AGAAAAGGGGGAAAGAAAATACATTGGTACCATAAGAAAATAATACATGAATTGTTGATCGTCACAAACCAATCTG
TGGTTTGATAGTTAGGAGAACAGTGGTATCCCCGCCCATCAGTGTTCAAGTCTTAAACTTAACACAATAGCGACTTCGTC
AATCTCAAGATGATGTGCCGGCTCAGTCTCTCAAAAATGCTCACAAAGGTAGGGTGTGCAT
>chr5A_44
-------------------------------------------TGAGATTTACGAAGTCACCGTAGGCGCCTCGTCGTCG
ACGAGAACATCCCCTCCCACTGAAAGGACGTCACCGGAAATCTTGAAATAAATCCATAAATAATGCGAGCATCAGGACTT
--------GGGGTGGACAGGTTTTGGGGTGGGATGGAATGGCAGACGTGTAAGTGGCTACGGTCCGGACATCGGCAAAGC
CCCCTTGATTTGCGTCCGGTTTGCGGGAAAATAGACGTCTGGACGATCCACGGATTGATAGGGGATCGCGTTGGATTGCA
AAATCCGCCCGAACCGCTATGTCCAAATTGTTGCAGGCGGTTTAAAGGTTCGTGATGAAGATGTACCTAAAGATTGATTT
GCAGGAAAAGGACGGCGCCTATTGTTGGTTGGTAGT--------GGTAGGAGAAACTAACTATTGTTGAATTGAAAAACA
GTCATTTCCTAAATAGACAGATCGCTATCCTTCATCTTTTAACGGCATAAAA---GGAGCCCGCAAAAAAAAAAGGAGCC
CATTTCCAAGTTGTAAGTCCCGTTTTATTTTTCC---------TTTTTCATCCTTCTCACCCGTTTCAGCGTCAAGACCG
TGTGCTTGCCGCGTTGACGGCTTACAACTTGCATCAGCCACGACAAAGCTCCATTGATAACGGTTGGAGCTGGCGTACAC
AGCAAGCAAGTACCATATGTCACAACGCGTTGCGTATATAAACAACCGACTGGATCAGTTTAATTACGTACTCC-TACTT
TTGATTGTGGGATAGGAAATGATGACCTTCCCGAACTACAAGGTTGACATTCATAGGAGCCCATCGTATTTGGTCAAGTC
GTTCTCTGTGGAGCGC----TGTCTATCCTTTTCATTTGGCAAAACAA---TGGCTGGCTTATATATACACCCCCTAGCA
ACTTCATTCGCTCTCACAAGCAAACAAACACTTGCAAC----CC------------CAAACTTTAACTTCTTACGT----
--GTAGCACACAATGTCTACGGCGCCGCCGCAAGCGAACC------AGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGT
GCGGCGCGTGTTCGACCTCTTCGACCACGACGGCGACGGGGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCC
TGGGGCTCGCCCTGGGCGCGCAGGCGGACGGGCTCGTCGCCGCCTACGTCGCGCCCGGCATGCCCGGCATGCCCGGCCTG
CGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGCCGGGGGAGGCGAGGAGGACGAGGAGGCGGAGATGAGGGAGGC
TTTCGCCGTGTTCGACGAGAACGGCGACGGGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGAGCGGATGGGGGTGC
CCGAGGCGGCGTGCATGGCGAGGGTGCAGGACATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCAT
GAGTTCAAGGCCATGATGGCTGCCGGTATGTAAATGTAATGGCTTAGTTATAAGAAGAATCTGATTTCTCGTTCCAAGTG
ATG-----------TACTGC------------------------------------------------------------
-----------------------------------------------------------TA-------------------
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>chr5D_274
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---------------------------------GACGTCTGGACGATCCACGGACTGATAGGGTATCACGTTGGATTGCA
AAATCCGTCCGGACC-CTATGTCCAGATGGTTGCAGGCGGTTTAAAGGTCCGTGTTGAAAATGTACCTAAAGATTGATTT
GCAGGAAAAGGACGGCACCTATTGTTGGTTGGTAGT--------GATAGGAGAAACTAACTATTGTTGATTTGAAAAACA
GTCATTTGCTAAATAGACACTTCATTATTCTTTATTTTTTAATTGTATAAAATATGGAGCCCATTTGCAGCGATGTTCC-
------------GTAAGTCCTGTTTTATTTATTTATTTTTCCTTTTTTCCTCCTTCTCACCCGTTTCAGCGTCAAGACCG
TGTGCTTGCCGCGTTGACAGCTTACAACTTGCATCAGCCACGACAAAGCTCCATTGATAACGGTTGGAGCTGGCGTATAC
AGCAAGCAAGTACCATATGTCACAACGCGTTGCGTGTATAAACAATCGATTGGATTAGTTTGATTACGTACGTATTACTT
TCGATTGTGGAATAGGAAATGATGACCTTCCCAGACTACAAGGTTGACATCTATAGGAGCCCATCGTATTTGGTCAAGTC
GTTCTCTGTGGAGTGC----CGTCTATCCTTTTCATTTGGCAAACAATGGCTGGCTC-CTTATATATACTCCCCCAAGCA
ACTTCATCCGCTCTCACAAGCAAACAAACACTCGCAATTAATCCTCCCAAACTTTACAAACTTCTTCTTTTTACGTAGAG
CAGTAGCACACAATGTCCACGGCGCCGCCGCAAGCGAACCACCAGCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGT
GCGGCGGGTGTTCGACCTCTTCGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCC
TGGGGCTCGCCCTGGGCGCGCAGGCGGACGGGCTCGTCGCCGCCTACGTCGC---------GCCCGGCATGCCCGGCCTG
CGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGGCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGC
GTTCGCCGTGTTCGACGAGAACGGCGACGGGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGAGCGGATGGGGGTGC
CGGAGGCGGCGTGCATGGCGCGGGTGCAAGGCATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCAT
GAATTCAAGGCCATGATGGCTGCCGGTATGTAAATGTAATAGCTTAGTTATAAGAAGAATCTGATTTCTCGTTCCAAGTC
ATGTACTACTAGTTTACTAC------------------------------------------------------------
-----------------------------------------------------------TACGTGCTAGCTATATGTACA
AGCTAGTCTTGTCATGTTTTTTCTTTTCTTTGTT-GGAGGCAAAGCTAATCTGTCATGTGCATACTGCATAACTGTC---
-AAAAAATGTGCATAGTCATCTACCTTTTGTAAGCAACGTCTCCTGTAGCCTCTGGATTTT-CCTCTCTGTTTCAGGTTG
TGTGTGTAGTTCCTTTTCATTTTTCTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTATTTATAAAAC
GAAATAGAATTATTCCCCA-AAAAAGAAACAGAATTTCTTGTCTGGCAGGTTTATAAGGTTTTCACAGTTCTTACAAAAA
ATCAATGTAGGTTTTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCACGTCTTTAAAATAT
ATTTTTGCAGTTTTAGAAAAATGTTCATACATTAAAAAT-ATTTTTA-TACTTTTCAATAAATTATTTATACTTCCTTGA
AACAAAAATTAGTGGTTAAAATGGTAAGCATCCAAAAAA-TAACATAGAAATGAAAAAA-AAATGAAAAACACAACAAGA
AAGAAGGAATGAAAAATAAACAGAAAAGGAAATTGAGTGTATTTGTTGAGAAAAACTTACATATTATATAAAA----AGG
CTTTCTTCGAAAAATAGAAAAAGGAGACAAGATTTTTTTTAATATATTATATGAAAAGGCTTTATTGAAAATGACAAAGA
GAAGAGAAAAGGGGGAAAGAAAATACATTGGTACCATAAGAAAATGATACATTAATTGTTGGTCATCACGAACTAATCTG
TGGTTGGACAGTTAGGAAAACAGTGGTATCCCCGCCCATCAGGGTTCAAGTCTTAAACTTAACACCATAGCGACTTCGTC
AATCTCAAAACGATGTGCCAGCCCAGTCTCTCAAAGATGCTCACAAAGGTAGGGTGTGCAT
>chr5D_983
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--------------------------------------------------------------------------GTATAG
CACTAGCACACAATATTCACGGCGCCGCGGCAACCGAACCAC---------CAGCAGCAGCGCCACCGGAGGCTGCAGGT
GCGGCGCGTGTTCGACCTCTTCGACCACGATGGCGACGGCGTCATCACCGCCGCTGAGCTCTCGGGCGCGCTGGGGCGCC
TGGGGC------TGGGCGCGCAGGCGGACGGGCTCGTCGCCGCCTACGTCGCA---------CCCGGCATGCCCGGCCTG
CGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGCCGGCGGAGGCGAGGAGGGCGAGGAGGCGGAGACGAGGGAGGC
CTTCGCCGTGTTCGACGAGAACGGCGACGGATACATCTCCGCGGCGGAGCTGCAGGCCGTCCTGGCGTGGATGGGGTTGC
CGGAGGCGGCGTGCATGGCGCGGGTGCGCGACATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCAT
GAATTCAAGGCCATGATGGCTGGCGGTATGTAAATGTAATAGCATAGTTATAAGAA---TCCGATTTCTCGTTTCAAGTC
ATGTACTACTACTAGTCTACTAATATTCACTCCGTTCGAAAAAACTTGTCCCTTAAATAGATGTATTTAACACCAAATTA
GTGCGAGATACATTCATTTGAGGAATAAGCTTAGGACAAGCATTTTCGGATGAAGGGAGTACGTGCTAGCTATACGTACA
AGCTAGT-TTGTCATGTTTTTTCTTTTCCTTTTTTGGAGGCAAAGCTAATCTGTCATGTGCATACTGCATAACTGTCAAA
AAAAAAATGTGCATAGTCCTGTACCTTTTGTAATCAACGTCTCCTGTAGCCTCTGGATTTT-CCTCTCTGTTTCAGGTTG
TGTGC--AGTTCCTTTTGA-TTTTCTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTATGATAT
GAAATATAACTATTCCCCATAAAAAGAAACAGAATTTCTAGTCTGGCAGGTTTAAAAGGTTTTCACAGTTCTTGCAAAAA
ATCAATGTAGGTTTTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCACGTCTTTAAAATTT
TCTTTTGCAGTTTTAGAAAAATGTTCATACATTAAAAAATA-TTTTTGTACTTTTCAATAAATTATTTATACTTCCCTCA
AACAAAAATATGTGGG-AAAATGGTAAGAATCCAAAAAAATAACATAGAAATGAAA-AA-AAAAGAAAAACACAACAAGA
AAGAAGGAATGGAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAAAAATTACATATTATATAAAA----AGG
CTTTCTTCGAAAA-TAGAAAAGGGAGACAAGA------------------------------------------------
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>chr2A_1739
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-------------------TTTTTCTAGTTGGACATCTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTATAAAAT
TAAATATAATTATTCCCCACAAAAAGAAACAGAATTTATTGTCTTGCAGGTTTAAAAGGTTTTCATAGTTCTTTCAAAAA
AT-AATTTAGGTTTAAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCGCGTCTTTAAAATAT
ATTTTTGTTGTCTTAGAAAAATGTTCATACAGTAAAAAT-GTTTTTTATAATTTTCAATAAATTATTTATACTTCCTTGG
AACAAAAATAAGTGCG-AAAATGTTAAACATCCACAAAAATAACATAGAAATGGGG-AA-AAATGAAAAACACAACAAGA
AAAAAGGAATGAAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAACATTTATATATTATATAAAATTAAAGG
CTTTCTTTGAAAAATAGAAAAAGGAAACAAGAAAATG-TTTATATATTATATGAAAAGGATTTATTGAAAATGAAAAGGA
GA--AGAAAAAGGGGA-AGAAAATGCATTTGTACCATAAGAAAATGATACATTAATTGTTGATCGTCACGAACTAATATG
TGGCTGGACAGTTAGGAGAACAGTGGTATCCCTACCCATCAGGGTTTAAGTCTTAAACTTAACACCATAGCGACTTCGTC
AATCTCAAGACGATGTGCTGGCTCAGTCTCTCAAAGATACTCAGAAAGATAGGGTGTGCAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--------------------S-----
-S-S----S--S--------------S-S----S--------S----------S--SS-------------S------S-
SSSSSSSS----------S-----S-----S-----------SS-----------------------S-S---S------
---S--------------------S--S----S-------------------S--------S------------------
----------------------SS-------------------S----------------------S-------------
---------S--------------------------SSSSSSSS------------------------------------
---------S------------------------------------------------------------S---------
------------S-------------------------------------------------------------------
------------------------------------S---------------S-S---------------S---------
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----------------------------S----------------------S----------------------------
----------------SSSS----------------S--------------------------------S------S---
------S-------------------------------------------S------S--------------S-------
---------S----------------------S-----------------------------------------------
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----S-------------S----------------S-----S--------------------------------------
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------------------------------------------S--S----------------------------------
-------------------------------------------------S------------------------------
-----------------------------------------------S--S-S----------S----------------
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--------S-------S------------------------S------------------S-------------------
-------------------------------------------------------------S------------------
------------------------S-------------------------------------------------S----S
-------------------------------S------------------------------------------S-----
-------------S------------------------------------------S-----------------------
--------------------S------------------S--------------------------S-------------
---------------S---------------------------------S---------S--------------------
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--------S---------------------------------------S-------------------------------
---------------------------------------------S------S----------------S---S------
-----S--S---------------------------------S----------------------S--------------
----------S------------------------S-------------------------
>forward_1011
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-------------------------------ACACTCGCAATCCTCCCAAG-----------------------------
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>reverse_2676
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-----------------------------------AATGCTCACAAAGGTAGGGTGT----
