>input_sequence_78598
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-----------------------------------------------------------------------ATGGGGCAG
GAAGAGGAAGCCCTGACCGTGGCCTTCGAGTGGGAGCGTGTGGAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGT
CCTGTCGTGGGAGCTCGAGCCGGCCGTGAAGAAGCCGGTCTCGACGCTTGAAGCACGTGGTGGTGGTGGCATGCGGGAGG
GCCACAGGAAGGTGCCGGCGCTGGCGAGGCGGCTCTCGGTGCCGCCGCCGCCGGGCAGGCCGGCTGCTAGGGACTACTCG
AGGGCCGTCCGGCCGGAGGACGACCCGTTCCTGGCGGCTTACCTGGCGTGCACCAAGAGCGTCGCCGACGACG------G
GAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGTCAGAGGCGGTGGGGCGTGCTCGGGCGTGGGCTGGGCGTGC
TGTCCTGCAAGCGGTACAACGGCGTGATGGAGCAGAGCATGGTGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGAT
GCTTAA--------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G009800
CTGGCACCCCTACATGACCATGACTAAGACATTAGAGGAAGAAACCATACCTGATATCCACAAACCATGAACCCGGCACA
CGATCCACCATCTTTCAGATGCCATTGATGCATACCGCAATCAGAATCCTCTCTTGGACTACCTTCTAAGCTCCTGGCCA
ATGCTGGAGCAAACATTGTCACAACGGCAGAGCCCGAGGACACAAGTCCACCACGAGGATGCCGC---TGCCACATCATC
CTTACTTGAACGGTCTGATTTTCAGACCCACCCCCAACCATATATAGGACCGTATGGCTCGTCGGAGAAGGATCTGAAGA
ATCTTTATTCAACGCCGCCATCACCGCTGCTGAAGCCAAGACAATGAACAATGT-AAAAACTAAAACTACTAGGGCCTAA
AGCGATCCACGCGCGT---------------------------------------------------------CCTCACC
ACTGACGACCGAGATCGTCGGCAGAGGGGAGCCCCCGGAGT-ACGGCGCTGGAGGAACTCTCCTTGCGGCGGGCACCGGC
AAGATCGCC-TTTCTTTCTTCGAGAGGGAGAAAGAAAACGATGCACCTTCTTAGCAAGAGATTAC---CACAATAACAAA
TTTAATACTACATCATTAACACGCGCGTACA----AGAATAGAATACGGTTGCAAAGTACTACTAGTACTAGTACTAGTA
CAAACAACCCTTGGTCTCCCGCCATTCGTATGCATATATACAACCCGATCCCTAGAGCCGTCCCTCCACTGCCACTAAG-
---------------------------TAATATCCATTTAGTTGGGCCATGCACACGTTTGGCATGCATGTACGCAT---
GATGCATTCATGATCCATAAGCCCTCTCCTCTCCACT----------CCCTCGATCGCCCCACCACTTCCTCAAAAACCA
ACCACCTTCGTCCTCTTTCCCTTCTTCGTCTTGCTCACGCCAAGAAGCGCGGCAAGAAACCGTTGGTCCGTACCAGCACG
ACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTATCTGCCGGTGGCTCTTTGCCCTTGTGTACGTACATACATGGGGCAG
GAAGAGGAAGCCCTGACCGTGGCCTTCGAGTGGGAGCGTGTGGAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGT
CCTGTCGTGGGAGCTCGAGCCGGCCGTGAAGAAGCCGGTCTCGACGCTTGAAGCACGTGGTGGTGGTGGCATGCGGGAGG
GCCACAGGAAGGTGCCGGCGCTGGCGAGGCGGCTCTCGGTGCCGCCGCCGCCGGGCAGGCCGGCTGCTAGGGACTACTCG
AGGGCCGTCCGGCCGGAGGACGACCCGTTCCTGGCGGCTTACCTGGCGTGCACCAAGAGCGTCGCCGACGACG------G
GAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGTCAGAGGCGGTGGGGCGTGCTCGGGCGTGGGCTGGGCGTGC
TGTCCTGCAAGCGGTACAACGGCGTGATGGAGCAGAGCATGGTGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGAT
GCTTAATACAGTACTA---GTAATTATCTCCCAATCCATCATCTTCATCTTGTTGGATTCTTCTTCTTTGTCATGCATGG
TTTGCA----CTAGTTTCTTTCTGGTCAAGGTTAATTAGTAGTAGCGGTGTGATAAACTTTGGTG-ATTAGGAGAAGTAG
AAAGTTTGATTCGTCAGGGAAAAGAAGACACACTTAATTTGCATGTGTGGTGAAGACTGAAGAGGAAGGATGCATCATCA
TCT-------------------CAATCTTCATCTTAATTTCTATTGCTGTGGGTTCAGATTTCAGAACATCAGATTATTG
TGGGAGCCGCATAAGCATTTTGTTCCTTCTTCTCTGT-------------GATGGATGGATGGATAGATTGATTTCCATG
ACACTGACTCTCTGCCCTGCACTTGAAATTTTCTCCCTGTCAGTGTCAACTC----GACACTGACATGCCGAGGTTGACC
GA---GACTTGGAACATTCCATTGCTAATTTCTTGTGTCTGTGTCCATTGTGTAGATAGGAATATGAGGCCCTGATTATT
GGTAGCAACATAAAGGTCAGTTAT--AGATTAGGTAGGGGGTCTAGT--CACAAGCACAACTGCTACCGCGGTCTATCTG
CAAGTTGCAGATAGTACCTGAATCTCACAAGTGCAGTGCAACAGAGGCTGGTCCATAGTAACTTAGTAGTACTAGCTGGA
AACTACCTCCGTCCGGATTTATTGGTTCCCATTGTATTTCGTATCAAATTTTGATTATAGATTAAACTAACAAAATGTTC
ACGCATGTCACCAAACATTATATTTTTTAAAACTATGTTCAAATACGAATCCAATGAAATAATTTTTCTTGACATGCATT
AACATTTTGTTAGTTAAATCTTTAGTCAAAATTTGGTACAAACTATAAAGGGGACCTATAAACCAGGACGGAAGTAGTAA
GTTACAGACCAGAGGGAAACCTATGGCCCAGTGATACTGCCTGTATCCATTTTCTCTGACCATTTCCATGCCGTGAGATA
ATAGCTAAGACAGGGCA
>chr1D_17
----------------ACCACGACTAAGACGTCGAAGGAGGAAACCATACCTGCCATCCATGAACCACAAACCCGGCACA
TGTTC---CATCTTCCAGCTGTCGTCGATGCAGACCACAATCTGCATCCGCTCCTGGACTACCTCCCAAGCTCTGCGCCG
ACGCCGGAGCAAACATCGTTGCAACAGCAAAGCCCGAGGACACATGTCCACCACGAGGATGTCGTCGCCGCCACACCATC
CTTGCTTGAACAGACTGGTTTCCAAATCCATCCCCAACCATA----GGACCGATCGCCTCGTTGGAGAAGGATCTGAAGA
ATCTTTATTCAGCACCGCCATCGCCACCGCCGAAGACGAGATGATGAATAGCCT-AAAAATCTAGACTACGTAGGCCTAA
ACCAATCCACACGCGTGGATCC------------------------------------------GGTGACCCACCTCACC
ACCGACGACCGAGGTCGCCGGCGGAGGGGAGTTGCCGGAGGAACGGCGGTGGAGGAACTCCCCCGGAGGCGG---CTGGG
GAGATCGCTTTTCCTTTCTTCGAACCGAAGAAAGAAAACG----------------------------------------
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>chr5D_19
------------------CATGACTAAGACGTTAGAGGAGGAAACCATACCTGGCATCCACAAATCACGAACCCAACACA
GGATCCACCATCTTCCAGATGCCGCTGATGTAGACCACAATCTGCATCTGCGCTTGGACTACCTCCCAAGCTCCACGCCG
ATGCTTGAGCAAACATCGTCACAACGACAGACCCCAAGGACACAAGTCCACCACGAGGATGCCGC---CGCCACACAATC
CTTACGTGTACAATCTGGTTATCAGATCCAT-CCCAACCATA----GGACTGCACGCCTCGTCGGAGAAGGATTTGAAGA
ATCTTTATTCAGTGACGCCATCTCGACGGCCGAAGCCAAGACGATGAACAGCAT-AAAAACCAAAACTACTAGGGCCTAA
AGCGATCCACACGCGTGTATCC------------------------------------------GGTGA-----------
-----------------------------AGCCCCCGGAGG-ACGGCGGCGGAGGAACTCTCCTTGCGGCAGGCACTGGC
GAGATCACC-TTTCTTTTTTGGAGGGGGAGAAAGAAAACGATGCACCTTCTTAGCAAGAGATTAC---CAGAATAATAAA
TTCAAAACTGCATCATTAACACGCGCGTACAAGCTAGAATACAATACGGTTGCAAAGTACCAG------------TAGTA
CAAATAACCCTTGGTCTCCCGCCATTCGTATGCATATATACAACCCGATCCCTTTAGCCGTCCCTCCACTACTAATACTG
ATCAAAAGCATAACCGCCCATGGAGCATAATATCCATTTAGTTGGGCCATGCACACGTTTGGCATGCATGTACGCATGAC
GATGCATTCATGATCCATTTGCCCTCTCCTCTCCTCT----------TCC----TCGCCCCACCACTTCCTCAAAAACCA
ACCACCGTCGTCCTCTTTCTCTTCTTCGTCTTGCTCACGCCAAGAAGCACGGCAAGAAACCGTTGGTCCATACCAACACG
ACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTAGCTGCCGGTGGCTCTTTGCCCTTGTGTACG----TACATGGGGCAA
GAAGAGGACGCCCTGACCGTGGCCTTGTCGTGGGAGCAGGAGGAGGGCATGCCGGAGAGCCCGAGGAAGGCGCCGGTGGT
CCTGTCGTGGGAGCACAAGCCGGCCGTGAAGAAGCCGGTCTCGACGGAAGCC---C---GTGGTGGTGGCATGCGGGAGG
GCCAGAGGAAAGTGCCGGCGCTGGCGAGGCGGCTGTCGGTGCCGCCGCCGCCGGGCAGGCCGGCGGCGAGGGGCTACTCG
AGGGCCGTCCGGCCGGAGGACGACCCTTTCCTGGCGGCGTACCTCGCCTGCACCAAGAGCAGCGGCGACGGCG------G
GAAGAAGAAGACCGGCGGCGCCGCGCGGGAGCCCAAGGGCGAGAGGCGGTGGAGCGTGCTCGGGCGTGGGCTGGGCGTGC
TGTCCTGCAAGCGGTGCAACGGCGTCATGGAGCAGAGCATGGTGAGGCTGGCCAAGCTGCCCGAGCTGGATCCCAGGGAT
GCTTAATAG-----TACTAGTAATTATCTCCTAATTTATCATCATCGTCATC------TCCTC-TTTTTGTTTGGCATGG
TTTGCAGTACGTAGTTTCTTCC----------------------------TGATAAACTTTGGTTAATTAGAT---GTAG
AAAGTTTGAGA----------------ACACACTAAATTTGTCTGTGTG-------CTGAAGAGGAAGCATGCATCATCT
CA-----------------------------TCTTCCTATAGCTGGGTTTTTCAGATTAT--------------------
TGTGTGTCGCATAAGCATCTTGTTTCTTCTCTGTGATGC---------------------TGGATGGATTGATTTCCATG
ACACTGACTCTCTGCCCCGCACTTGGAACTTTCTTCCTGTCAGTGTCAATCAACCAGACAGTGACATCTAGAGGTTGACC
GAGACGACTTGGAACATTCCATTGCTAATTGCTTGTGTCTGTGTTCATTGTGCGGATAGGAATATGGATCACTGC---TT
GGTAGTAACAGAAAAGTCGTTTATACAGATTAGGTAGGGGGTCTAGTGTCACAAGCATAACTGCTGCTGCGGTCTATCTG
CAAGTTGCACATAGTACCTGAATCTCAAAAGTGCAGTGCAACGGAGGCTGGTCCATAGTAATTTAGTACTAGCTGCTGGT
AAGCTAC-------------------------------------------------------------------------
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>chr5A_161
ATGTCTGA------------------------------------------------------------------------
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-------AGCAAACATCGTCATAACGACAGAGCCTGAGGACACAAGTCCACCACGAGGATGCCGT---TGCCACACCGTT
CTTACATGAACGGTCAGATTTTCAGATCTATCCCCAACCATA----GGATCGTACGCCTCTTCGGAGAAGGATCTGAAGA
ATCTTTATTCAGCGTCACCATCACCGCCATCGAAGCCAAGACAATGAACAATGTAAAAAACCAAAACTACTAGGGCCTAA
AGCGATCCACACGCGTGGATCTGACAACCCACCCTCACCATTGAAGACCGAGGCCGTCGGCGGAGGGGG-----------
-----------------------------AGCCGCTGGCGG-ACGGCGGTGGAGGAACTCTCCTTGCGGCAGGCACTGGC
GATATCGCC-TATCTTTCTTGGAGGGGGAGAAAGAAAACGATGCACCTTCTTAGCAAGAGATTACTACCAGAATAATAAA
TTCAAAACTACACCATTAACACGCGCGTACA----AGAATACAATACGGTTGCAAAGTACTAG------------TAGTA
CAAATAACCCTTGGCCTCCCGCCATTCGTATGCATATATACAACCCGATCCCTTTAGCCGTCCCTCCACTACCACTAA--
ATCAAAAGCATAACCGCCCATGGCGCATAATATCCATTTAGTTGGGCCATGGACACGTTTGGCATGCGTGTACGCAT---
GATGCATTCATGATCCATTTGCCCTCTCCTCTCCTCTCCTCTCCTCTCCCTCGATCGCCCCACCACTTCTTCAAAAACCA
ACCACCTTCGTCCTCTTTCCCTTCTTCGTCTTGCTCACGCCAAGAAGCACGGCAAGAAACCGTTGGTCCATACCAGCACG
ACAGGCCGGCCGGTGGTGATTAGTTAGCTAGCTAGCTGCCGGTGGCTCTTTGCTACTATGTACG----TACATGGGGCAG
GAAGAGGACGCCCTGACCGTGGCCTTCTCGTGGGAGCAGGAGCTGGGCATGCCAGAGAGCCCGAGGAAGCCGCCGGTGAT
CTTGTCGTGGGAGCTCGAGCCGGCCGTGAAGAAGCCGGTCTCGACGGTTGAAGGAC---GTGGTGGTGGCATGCGGGAGG
GCCAGAGGAAGGTGCCGGCGCTGGCGAGGCGGCTGTCCGTGCCGCCGCCCCCGGGCAGGCCGGCGGCGAGGGGCTACTCG
AGGGCCGTCCGGCCTGAGGACGACCCGTTCCTGGCGGCGTACCTGGCCTGCACCAAGAGCGGCGGCGACGGCGACGGCAG
GAAGATGAAGACCGCACCAACAA---GGGAGGCCAAGGGCCAGAGGCGGTGGAGCGGGCTCGGGCGTGGGCTCGGCGCGC
TGTCGTGCAAGAGGTCCAACGGCGTGGTGGAGCAGAGCATGGTGAGGATGGCCAAGCTGCCCGGGCTGGATCCCAGGGAT
GCTTAATAG-----TA---GTAATTATGTCCTAATTTATCATCGTCGTCATC------TCCTCTTTTTTGTTTGGTATGG
TTTGCA----GTAGTTTCTTCC----------------------------TGATAAACTTTGGTG-ATTAGAT---GTAG
AAAGTTTGAGA----------------ACACGCTAAATTTGTACGTGTG-------CTGAAGAGGAAGCATGCATCATCT
CAATTGCTCAGAGATTTGGCAGCAATCTTCATCTTCCTATAGCGC------------------------------TACTG
TGTGAGTGGCATAAGCATCTTGTTTCTTCTTCTTGTTCTAATCTGTGATGGATGGATGGATGGATGGATTGATTTCCATG
ACACTGACTCTCTGCCCTGCACTTGCAATTTTCTACCTGTCAGTGTCAATCAACCAGACAGTGACATGCAGAGGTTGACC
GA---GACTTGGAACATTCCGTTGCTAATTTCTTGTGCTTGTGTCCATTGTGCAGATAGGAATATGGATCACTGC---TT
GGTACCAACAGAAAAGTCGTTTATACAGATTAGGTAGGGGGTCTAGT--CACAAGCACAACTGCTGCTGCGGTTTATCTG
CAAGTTGCAGATAGTACCTGAATC--------------------------------------------------------
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>SNPs
S--S-SSSSSSSSSSS--------------S--------S-------------SS------------S------------
S-------------S--------S--------S---S-----S-S----S--------------S-S-------SS---S
----------------S----------------------------------------------------------S----
--------------------------S---S-----------SSSS--------S-S-----------------------
-----------S---------------S--S------------------------------S------------------
----------S---------------------------------------------------------------------
--S----------S---S----S-----------------S-------S---------------------------S---
S-----------------------S---------------------------------------------S-----S---
--S--S-----------------------------------S--------------------SSSSSSSSSSSSS-----
----S------------------------------------------------SS---------------S-------S-
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------------------SS--------------S---------------------------------------------
------------------------------------------------S--------------------S----------
----------------------------------S-----------------------------SSSS------------
--------S------------------SS--------SS-S---------------------------------------
----------------------------------------------S------S--SSS---------------------
----S-----------------------------S-----------------------------S--S----S-------
--------------------------------------S--------S-------------S--S-----S---------
---------------------------------------S------------S---------------------------
---------------S----------------------------------------------------------------
--------SSSSSS-----------------S---SS------S--S--S-SSSSSSS--S----S-----SSS------
----------S---------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------SSSSS----
---------SSSSSSSSSSSSSSSSSS-------S------S-------SSSSSSS------------S----------S
SSS--------------------------------SS-S-SSS-S-S-S-SSSSSSSS--SSSSSSSSSSSSSSS--S--
--S---S-----------S-----S--------SSS-----------------------------S--------------
-------------------------S--------S--------------SSS--------S--------S----------
----------------------------------------------------S-------------SSS-S---SSSS--
----------S---S---SS---------------------------------------------S-S------------
---------------------------S--------------S------------------S------S--SSS-----S
--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_799
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-----------------------------------------------------------GTCCCTCCACTGCCACTAAG-
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>reverse_2617
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--------------------------------------------------------TGACCATTTCCATGCCGTGA----
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