>input_sequence_78590
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----------------------------------------------------ATGCCAGCACCCAAGGGGACGAGGAGGA
GCCTCGTACTGAGGACCGTGGAGCGGTGCAAGTCCGGGACCGGGCGAAGCGGCGGCGCAGCGTCGGCGGTGGCCGCCGGG
CGCTTCTCGGTGTACGTCGGGGCGGAGCGGGAGCGGTTCATGGTGCGCACCGACTGCGCCAACCACCCGCTGTTCCGGCG
GCTCCTCGACGACGCCGAGCGCGAGTACGGGTACGCGTCGCAGGGCCCGCTCGCGCTGCCGTGCGACGTCGGCACGTTCC
TCGGCGTCCTGTGG-CAGATGGACCACGGACACCACCACG---ACGACGACGACGACAGTGCCGGCGGCGAGGAGATCCG
GGAGGCGGCGTCGCCGATATGCGGCTTGCTGCTGGGTGGCCGCGGCAAGTGCCGGGCGGCTGGGTACCGCCGGATGCTCA
GCCGGGCGAAGACGTCGTGGGCCACCGGGCAGCAGCTTCTCCCACGGTTCACACTTGGCAGTTAG---------------
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>chr4A_1_TraesCS4A01G414300
GGTTAAAGTGTTTTTCCTGTATTCCACACGGGAAGAAATGTTGTATTTTCTTTGGGGTAAAGACCGACCGTAGCTGAAAC
AAACAAAATAAATTTATAACATATATAAACACATGATAGAACACACCTAGCGTAATATTTGCTAGCCTAAAAACCTCTTA
GCCAAGGGCGAAGATGGTACAGAGTTTTGGGTTCAGCCGGACCCAAAAAAACTCATCAAATGCTCAATGTATTAGTTTTT
AACATCGACTGTTAGGGAAGAATACATCGACAACCAACGGAGCTAAACCTAATGGATGTTTCCCCTTTTCAAGAATTCAT
CCGATTAACTAGTTAACTTGCCGATTAATCCCTACTCATATGGTTCCCGAGTAGTCGATTACCCGATAAATCATCTGATT
AATTGATTAAATGGCCGATTAACTTGGCGGTTAGCCTATTAATCTCCTACTCACCAGCCGACCGAGCAGCTACCAGTTAA
CGATTTCCTCAACAATGGATGTTTCTTTAGCTTCACCCATGTTCTTAGCTTAATGGCAAAAATGTACATTCCCCACCTAA
TAATAGGAGCAGGAACTACGGCTAACATTATTTTTCTTCTGCTACTACTTTTTTTAATAAAATGGTTGTGTGCATCACTT
GATGCAGAGGCCGGGGTAATTCTTCTTTTCAAAAAAAACCTTTTTTTTCTTTGTATTCATATGTTATTAGAAGCCCGCAA
AGTGCTAACTAAAAGGACCATAAACTCTAGTGCAATTGTCTCGGGTCGATGAATGATGATGTTAATAAAAAATTTGACCA
TCAATAAAATACGTATGTCGTAGCATTTTTTGTTTTTTGGGAACAAGTATGCCATAGCATCTATCCTTACACATGTCACT
ACCCTCGGTAGCTACCTATAAATGCTAGTGGCGACTGGCGAGCCTCTTGCAAACCGGGGTGCGCTCGATCGTCATTCAGC
TGCGGGG--TACAGGCTGACCGCTCTGCGCACGGTGACCAA----------CATGCCAGCACCCAAGGGGACGAGGAGGA
GCCTCGTACTGAGGACCGTGGAGCGGTGCAAGTCCGGGACCGGGCGAAGCGGCGGCGCAGCGTCGGCGGTGGCCGCCGGG
CGCTTCTCGGTGTACGTCGGGGCGGAGCGGGAGCGGTTCATGGTGCGCACCGACTGCGCCAACCACCCGCTGTTCCGGCG
GCTCCTCGACGACGCCGAGCGCGAGTACGGGTACGCGTCGCAGGGCCCGCTCGCGCTGCCGTGCGACGTCGGCACGTTCC
TCGGCGTCCTGTGG-CAGATGGACCACGGACACCACCACG---ACGACGACGACGACAGTGCCGGCGGCGAGGAGATCCG
GGAGGCGGCGTCGCCGATATGCGGCTTGCTGCTGGGTGGCCGCGGCAAGTGCCGGGCGGCTGGGTACCGCCGGATGCTCA
GCCGGGCGAAGACGTCGTGGGCCACCGGGCAGCAGCTTCTCCCACGGTTCACACTTGGCAGTTAGCATCTGGCAGAAGGA
------AATTAATAAACTTATTGACCCGCATTTGG--------TCATAGTCATACCACACCAAGCTCTGCGTTTATC-CG
GATTAGTTGGAGATTCGCATACGTATAAGTAT-------------------------------------------CCACA
TGTTGACCTTGACCAATACGGTATTATGTTTACCAATACTGTATACGGGAGTCTGCTGTTCTATATATATAGTGTATAAA
TATCCACATGTCGCCCTG--------------------------------------------------------------
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--------------------------------------------------------------------CAAAAAAAAATT
CCACATGTCGC---------------------------------------------------------------------
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----------------------------------------------------------------AGTGAGAAAGTAATTT
CACTGCCCATTCGCCCATGC-TTTTTAGTTTGATTTTCAAGTTTGTACCATTTATAACTGTTGAACCAAATATCTTATAT
GTATCCATTTGGATATTAGTGTTCATGGTATTTAAATCTTCAAA-TAAGTTCAATCTTGGACACGTA--------AATTT
AAAACTTGAGTTTTGAAACTATAACGAAACTAAATTATTACTTTTGACTTATTTCATTTGATTTT--T-----TGTTCTA
CTAATTTACCATGTGTTACTTATAACATTCAGATTTCATTTTGATGTTTGA-------------GCTGTCATACCATTTC
GTTAAATTATCTTTCATGGTTTGAGCTTGGCTATAAACATGTTTTT-CCTTGCTTCTTCAAGCAGGAGATCCCGAATCCC
CATGACATCAGACTCCCATTTTATTACCTGTGTGCCATGATCACATTAAGCTGCATGGTAACATATTTTCAATATCATTT
CATATGTGT--GTCATCGCAATTTTACATGTCTTCATTATTGTTTCATTACAATCTCTTTTGCATGGTCATTATTGTTTC
ATATCGCATTTCATTAAAGTTTAATATATACTAGAAGGGTTGGGCGCGCTTTGCCGCGCTGTTGTTATTATTAGGATTCT
TAGAAAAATATTCACTCTATTTTAAAATATAAGGTGTATGACTTTTTTGAAAATTCAAACTTCTTTAAGTTTGATAAAAT
TTGTAGAGAAATACATGGAAACCTATAATATCAAATCGGTGTCGGAATTTCCATATTTT
>chr4B_828
TTTTTTTTTTGAACAGTGTGTCG---------------------------------------------------------
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------------------------------------------------------TAGCATCTAGCCATGCGCATGTCGAT
ATCCTCGGTACCTACCTATAAATGCTAGTGGCGACCGGCGAGCCTCTTGCAAAGCGGCGTGCGCTCGATCGTCATTCAGT
TGCGTGG--TGCAGGCTGACCGCTCTGCGCACGGTGACCAA----------CATGCCAACACACAAGGGGATGAGGAGGA
GCCTCGTGCTGAGGACCCTGGAGCGGTGCAAGTCCGGTACTGGGTGGAGCGGCGGCGCAGCGCCGGCGGTGGCCGCCGGG
TGCTTCTCGGTCTACGTCGGGCCGGAGCGTGAGCGGTTCATGGTGCGCACGGACTGCGCCAACCACCCGCTGTTCCGGCG
GCTCCTCGACGACGCCGAGCGCGAGTACGGGTGCGCGTCGCAGGGCCCGCTCGCGCTGCCGTGCGACGTCGACGCGTTCC
TCGACGTCCTGTGGCCAGATGGACCACGGA---------G---ACGACGACGACGGCAGTGCCGGCGGGGAAGAGATTCC
GAAGGCGGCGTTGCCGATATGCGGCTTGCTGCTGGGTAGCCGCGGCAAGTGCCGTGCGGCTGGGTACCGCCGGTTGCCCA
GCCGGGCGAAGACGTCGTCGGCCAGTGGGCAGCAGCTTCTCTCACGGTTCACACCTGGCAGTTAGCATCTGGCACAAGGA
------AATTAATAAACTTG----------------------------GTCATACCACACCAAGCTCTGCGTTTTTTTCG
GATTAGTTGGAGATTCGCATAC------GTAT-------------------------------------------CCACA
TGTTGACCTTGACCAATACGGTATTATGTCTATCAAT-------------------------------------------
-----------------------------------------------------------ACAATATTTTTTTCACCAAAA
ACGTTCGATCTATTCATTTGCAATCATGGTAGTACAACAAACAATAAAAATAATAAAAATTACAACCAGATTCATAGATG
AGCTAACGACTGCTACAAGCATTGAAGCGAGACAAAGACGCGCCGTTATCATCGCTCCTCCCTCGCGGAGCCGGGCAAAA
CTTGTTACAATAGACAGTCGGGAAAT------------------------------------------------------
-CGTCGTGCTAAGCCCCATAGGACCAACACACCGTAACGGCTACCGCCGCCGATGAACAGTAGCGTAGATCAGAAGGATC
CAACCTGAAGACACGAACATAGACGAACAAGGATCAGATCCGAGCAAATCCGCCAAAGATAAATCCACCGAAGATACACC
TCACACGCTCATCGCGATGCTAGACGCACCACCGGAAGGGGACTAGGCGGGAAGACCTTTATTCCATTTTAAGGGAGCCG
CCCTTGTCTCAAATTCCCGAGCAGGACACAAAACCTAACAACGGAGCCCCCATG--------------------------
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----------------------------------------------------------------------------GCCC
TCTAAAAACGGAGCCCTCCCACCGGCAACGGCTGCGATCCACTCCGCCCCCATGGCCCTAA--------GGCCATCAGAG
ACGAGGCGGACCGGAGGCTTCGCCGGCGGGAGGTAGAGGCACCCTAGCTTTGGGAAGGAACCTTCTGTAACTGTAAATCA
TTTTTCTTT-----------------------------------------------------------------------
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--CTTCCCACTCACACATGCATTTTTAATTTGATTTTCAAGTTTGTACCATTTATAACTGTTGAACCAAATATCGTATAT
GTGTCCATTTGGATATTAGTGGTCATGGTATTTAAATCTTCAAAATAAGATCAATCTT-GACACGTA--------AATTT
AAAATTTGAGTTTTGAAACTATAATGAAACTAAATGATTACTTTTGACTTGTTTCATTTGATTTTTTT-----TGTTCTA
CTAATTTACCATATGTTACTTGTTACATTCAGGTTTCATTTTCATGTTTGG-------------GTTGTCATACCATTTC
GTTAAATTATCTTTCATGGTTTGAGCCCGGCTATAAACATGTTTTTCCCTTGCTTCTTCAAGCAGGAGATCCCTAATCCC
CATGGCGTCAGACTCTCATTTTATTACCTTTGTGCCACGAGCACATTAAGCTGCATGGCAACATATTTTCAATATGGTTT
C--ATATGTGTGTCATAACAATTTTACATGTCTTCATTATTGTTTCATTACATTCTTGTTTGCATGTTTATTATTGTTTC
ATGTCGCATTTCATTAAAGTTT----------------------------------------------------------
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>chr4D_877
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----------------------------------------------------------------------------CAAT
ACCCTCAATACCTACCTATAAATGCCTAGTGCGTAGGCCGAGCCTCTTGCAAAGCGGCGAGCGCTCGATCTTCATTCAGT
TGAGTAGTATAGAGGCCGACCGCTCTGTGCACGGTGACCAAAGGAGGCACGCATGGCAACACCCAAGGGGGTGAGGAGGA
GCCTCGTATTGAGGACCCTGGAGCGGTGCAAGTCGGCGACAGGCCGGAGCGGCGGCGCAGCGTCGTCGTCTGTGGCTGGG
TGCTTCTCGGTGTACGTCGGGCCGGAGCGTGAGCGGTTCGTGGTGCGCACGGACTGTGCCAACCACCCGCTGTTCCGGCG
GCTCCTCGACGACGCCGAGCGCGAGTACGGGTACGCGTCGCAGGGCCCGCTCGCGCTGCCGTGCGACGTCGGCACGTTCC
TCGACATCCTGTGG-CAGATGGACCACGGACACCACCACCACCACCACCACGACGGCAGTGCCGGCGGGGACGAGATCCC
AAAGGCGGCGTCGCCCATATGCGGCTTGCTGCTGGCTAGCCGCGGCAAGTGCCGGGCCGCTGGGTACCGCCGGATGCTCA
GCCGGGCGAAGACGTCGTTGGCCACT-GGGAGCAGCTTCTCCCACGGTTCACACTTGGCAGAAGGAAATTAAGGACGCAG
GTGCTTAACTAATAAACTTAGTGACCCTCATTTGGTCGTAGACTCATAGTCATACCACACCAAGCTCTGCGTTTTTC-CT
GATTAGTTGGAGATTCGCATAC------GTATTGTATACGGAAGTCTGCGTTCTATATATATTCCCTATAAATATCCACA
TGTTGACCTTGACCAATATAAGTTCGAGTGACAAGTAATATGGATCGAAGGAAATAGTAAGTTTGTAACACATAGTTCAT
GGTGTAAATTATTGACTTTTATATGGCATGGTTCTATCATCTAAACTACACTTTGAAGAAAAATTGCTTATTTATCACTT
ACATGCGCTCGCTTCCTTGTTAAATTTCAATTGAACAACCGCAAACATAAAATTTCAATTGAACAAACACGGGCCCCAGA
GACGACCAAACAAAACCCATCGTGTTGAACAGTAGTACTCTCTCCATCCTAAAATAAGTGTCTCAACTTTGTACTAGCTT
TAGTATAAAATTGTACTAAGCTTGAGACAGTTATTTCGGAACGGAGGGAGTGCATGGCAAGGCATGAAAGCAAGAAACAT
CCGCCGTAATAAGAGCCCAAGCACCAATAAGCTACGAAACAATCCTAACTCCAATACCATGACAACAACGGTGATAGCAG
CTGAAGCACAAACACCG---------------------------------------------------------------
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----------------------AGGAGACAAAACCACCATCAGCCATGAGATGACACCACATGCAGCAGACTAGATGCAA
CGTCGTCGAGCAACACCGTCGGACCATGAGGGGCGATGAGCACCAACCCGAAGGAAGCTAGATTGTCTCAAAAAAAAAGC
TAGAGGACACACGCGAGCATCCGGGATGAGGCCCACCACGACACGATCAAGGGAAGTAGACACATCACGGGCCGAAGCCA
ACCAAAGGCCCACACCTCCCACCACCGACGAACATGGAAAGTAGGAATAACAGGAGCCAAAGCAAGAGGGGCCATCAGGC
CTCACAGCGACGACTAGAGGACGAGAGTAGAAAAAAAAAGCCCGAAAGTAGAAAAGGGTTTCCACCCAGTGAAATGAAAT
TCTAATGGTGTCGGTTTCTTCCGGATACAATCCCACCATCCATCCTTTTTTTGGATCCGTATCTGTAATAATCTGTGAAT
TGCTATACCCTTTAATGTAATACTATACACATATACAAAATGCCATCTTCTCTCTGCTATTCATCTACCTTGTTTCACCG
ACTCTATGCGTGTGGGACACCTAACTTGGTGGTCAGATAGTAAGTGACTAGTGAGTATGTTTGGAGCGAGAAAATAATTT
TGCTACTACTCACCT-ATGC-TTTTTAGTTTGATTTTCAAGTTTGTATCATTTATATGAACAAAGATCCAATCTGTC---
--ATCCGTTTGGATATTAGTGTCCATGGTATTTAAACCTTCAAAATAAGATCAGTCTT-GGACACATTTTGAAATAATTT
GAAATTTGAATTGTGAAACTATAATGAAACTAATCTATCATTTTTTACTTGTTTCATTCGAATTT--TATTTATGTTCTA
CTAATTTATCACGTGTTACTTACTTCATTCAGGTTTTATTTCAGTGTTAAGAGTGTTCAAATAAGTTTTCGTATCATTTC
GTTAAATTATCTTTCATGGTTTAGGAACGTG-----------TTTT-TTTTTCTTGCCCAGGCAGGAGATCCTGAGTCCC
CGTGGCGTCATACTAGCATTCTATTACCTTTGTGCCAAGAGCACATTAAGTTGCATGCTAACATATTTTCATCACGGTTT
G--ATATGG--GTCATCACAATTTTACATGTTCTCA----TGTTTCATTACATTCGCTTTTGCAT---------------
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>SNPs
SS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S-S-S-------S-
----------S------------------------S-----------------S---S---------------------S
----S-----------------------------------------------------S------------S--------
-----------------S----------------------S-----S---------------------------------
S--------------------S-------S--------------------S-----------------------------
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---S---------------------------------------------------S------------S--S-------S
-S-----------------------------------S------------------------------------------
------------------S------S------------------------------------------------S-----
--------------------S------S----------------------------------------------S-----
----------------------SSSSSS----------------------------------------------------
-----------------------------S--S-----SSSSSSS--SSS-SSSSSSSSSS-S-S--SSSSS-SSS-S-S
SS-SS-S--SSSSSS--S--------------------------------------------------------------
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------------------------------------------------------------------------------SS
SSSSSSSSSSS---------------------------------------------------------------------
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------------------------------------------------------------------S------S------
SS--S-------S-S-----------------------------------------------------------S-----
-------------------------------------------------S--------S---------------------
----S-------------------S-------------------------S-----------------------------
-----------------------S--------S---------S-------S--------------S--------------
--------------------------SS----------------------------------------------------
----S-S--------S-------------S-------S--S----------------------------------SS---
-SS--S-----------S----------------------------------S-------------S-S-----------
--S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_583
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---TAGGAGCAGGAACTACGGCT---------------------------------------------------------
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>reverse_1765
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----CACATGTCGCCCTGCAAAAA--------------------------------------------------------
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