>input_sequence_78587
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-------ATGGTGAAGATTCCCAGCCCGAGGAGGCTGTTCAGGAGCCGGTCGAGGAGCAC---GGCG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGCCCGGGCGGGATGCTCGTGCAG
AAGCGCCGGGGGCCGGACGACGACG---------CC---------GTGGTCGAGGCCATCCTGGTGAAGGTCTGCACCGC
CGGCGGCGCGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGCTGTGGCCCAGGGAGCAGCGGCTGCTATACCGTGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTGCAGGACAAGGACAAGGTGCTGCTCCTGGAGGACCCCGCCGTCACCGAGAGGAAGCTCCGGTCCACCACCCTCGCGCA
GCTCATGGGTGTGCCCTGCCATTCCTTCATCCAAGTCTA-G---------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G382600
GGGTTGACGTGTCCAGGCCGCCCCATATCTGCTCTACATTTGAGCTGGATATGATGGGCCCGAACAGGTCGAACGTTTGA
GGCCGGTTTGAGACGCCTGAATGGGTTAGTTTTGGCCGGTCTACCAGTCCGCCCACCCTGGCATTTAAGACAGGTTTGAG
GTGTAGATGTTCTAAGGCTCTTCGAATGCATGGGTGCTTAGATGAGGTGTTATGTGCATTCAAAGCCTTAGCAAGTAGCC
TTCCCAATGCATAGATGCTTCGATCTTGTAGCTAAGCTTCTCTCATGGAATCGTTTAATAATTAAACTCATTCATGTATT
GGTGGTAGTCATTTTACCTAGATCCGCGTGCTTAGCACCGTTTCTTTCTGAGATCATTATAATGTTCTTTATCCTATTTA
ATTGCTTTGCCACATCAATTTCTTTTTTATCTACTTGACGTCCTTAGCACCTCTACATCTTGGAGTACTCGGAAAGGCCT
AAGATAAACTTTTTGGGATCCAGGTAATAATAAAGAAATGGAACGAAACGGCAACAAAACAAACCAAACTGCAGCTGCTG
AGAGGATTCCGTGGGCCCC-GCCGTTCATGCAGGCAGTTGCAGGGCG-----GAGACCG----CGTTG-----------C
CACCTCCCCATGTGCTGCCGATCT--CGCCGTCGCAGC-AACAGCACACAGGTGTCGCCTCACCCGCGGCGACCCGGCGT
GTACAATACTCGATTAACCCTGCT------------------CTATTCCCGCTAAGCTTCGCCTAGTCACCACC-CATAT
CTTAATTCAACCCTTTCGCTCCCGCGCCCGCGCCC------------GTGCACGGCTCTCGTC----TCTGTC----GCG
ACTGCCG-------ACCTTGTCCTCA--------TCCCCAACGCCTTCT--CCCCCTTTAAAATCCCAACCATCT-----
-CTCCA------TTAAGCCTCACGCACCACAACAC-------CCAGAGAGCAGC------------T-----AGCTATCC
AT-C----ATCGACCATCCATCATCACGCA-----CACACACACGAGGCAGGCAGAGAGAAACAGAGGGCGCGC-GCAGA
GGAGGAGATGGTGAAGATTCCCAGCCCGAGGAGGCTGTTCAGGAGCCGGTCGAGGAGCAC---GGCG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGCCCGGGCGGGATGCTCGTGCAG
AAGCGCCGGGGGCCGGACGACGACG---------CC---------GTGGTCGAGGCCATCCTGGTGAAGGTCTGCACCGC
CGGCGGCGCGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGCTGTGGCCCAGGGAGCAGCGGCTGCTATACCGTGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTGCAGGACAAGGACAAGGTGCTGCTCCTGGAGGACCCCGCCGTCACCGAGAGGAAGCTCCGGTCCACCACCCTCGCGCA
GCTCATGGGTGTGCCCTGCCATTCCTTCATCCAAGTCTA-GCATAGAACCCACACCCCTCTTGCCGCCGGCCGTTCTCGC
GGTTTGTTTGGGCGATGATCTGCT---AGGTGTGTTAACCGAGTGTTAGCAGCGTTCATTTCTTTCTTCAGA--------
------------------------TTCGGCCGGTTGAATCGAAACATGTGCAACGTTAGGATAC----AATACAGT-ACA
GTACATGTTGTAAATTACTCTAATTTGTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTTCACTATAAGGACT
ATATTCGGATGTATATAGACGCCTTTTAGAGTATACGTTCACTCATTTTGCTTCGTATGTAGTCTATAGTGAAATCTCTT
AAAAGACTTATATTTAGAAACGGGGGAGTATATAAGGAGA---CAATGACAGTGATTATGTTGCGTATAAAAGTGTGAGA
AC-----ATGCGTGTGCTCATTCCTTGTTGCTGGCTCGTCTACATTCTTGCGACAAAATTAGCAATACAGTTCACACTAC
GCTACATATAACCTCTCATGCAGTCTATTCGTGTGCATAT-----TCTTCTGACGAAATTAGCAATACAGTTCACATTAC
GCTACACATACTACAGTCTGACAGAATCAGCAGGACAATTCACACTGTGCTAGTGCATACTCCATGAACAGTGCTGGTGG
AATATGTACAGTGCGAATTGGGAGTACTATCTACTTGTAGCAATTTTCTCCACCAGCATGTACACTGATGTACATCCATT
CTTCATGTCA-AAATTGACCTATGGCAATCGGCAGAGCAGGTTTACGGTTACCAAACATGTAACCGCCAGCTCGCCCGGA
CAAAA----------------GCTGGCCTGCTTTAACGGGCAGCTCACCGGCCGGAACTACTCCGCAGCACCCACCGACC
ACTGACGAAAACGTTGGGTGGAT----CATGGTATGCAATCGTTAGTGCTACGAAACCGGAGCATAATGCTAGCTGCTCT
TACGGTTTCCGGTAACTGCCCCGGGAATCAGAGGCCGGCCGGCCGGCGGCTCGCCTCTCGCCAAAATTTCACCGT
>chr3D_502
AGGGAATAGT----------------------------------------------------------------------
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--------------------------------AAAAAATGATAACGAACGACAACAAAACAAACTAACCTGCAGCCGGTG
AGGCGATTCCGTCGGTCCC-GCCATTCATGCAGCT---------GCA-----GAGACCG----CGTTG-----------C
CACCTCCCCATGTGCTGCCGATCC--AGCCGTCTTAGCAAAAAGCAGACAGGTGTCCCCTCACCCGCGGCGACTCAGCGT
ATACAACACTTGTTTAACGCTAAT---------CTATTTCTGCTATTCCTGCTAAGCTCCGCCTAGTCACCACC-CATAT
CTTAATTCTCC-----CTTTT-CGCGCCCGCGCCCTCGACCGCGCAGGCGCACGGCTCTCGTC----TCTGTC----GCC
GCTGCCG-------ACCTTGTCCTCA--------TGCTCGGCACCTTCT--CCCCCTTTAAAATCACAAGCATCCCTCCA
ACTCCA------TCAAGCCTCACGCAGCACAACAC-------CCAGAGAGCAGC------------T-----AGCTATCC
AT-C----ATCGACCATCCATCATCACGCACACTGCACACACACGAGGCAGGCAGAGAGAAGCAGAGAGAGCT---AGGA
GCA-GAGATGGTGAAGATCCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GGCGGGCGGCATCGGCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCGGGCGGGATGCTGGTGCAG
AAGCGCCGGGGCCCGGACGACGATG---------CG---------GTGGTCGAGGCCATCCTGGTGAAGGTCTGCACCGC
CGGCGGCGCGTGGCAGCACGACGTCTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGCCTGTGGCCCAGGGAGCAGCGGCTGCTGTACCGGGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTGCAGGACAAGGACAAGGTGCTCCTCCTGGAAGACCCCGCCGTCACGGAGAGGAAGCTCCGGTCCACCAGCCTCGCGCA
GCTCATGGGGGTACCCTGCCATTCCTTCATCCAAGTCTA-GAAA-----------CCCACGC-CCATCAGCTGTTCTCGC
TGTTTATTTGGGCGAAAGATCGGTTTCAGGTGTGTTAATTAAGTCTTAACTGCGTTGCTTTCATTCTTCAGA--------
------------------------GTCG----------------------------------------------------
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>chr3A_507
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--------------------------ATAGTAAAGAAATGGGACGGAACGACAAAGC----AACCAACCTGCAGCCGGTG
ATGCGATTCCGTCGGCCCC-GCCATTCATGCAGAT---------GCA-----GAGACCGCGTTCGTTG-----------C
CACCTCCCCATGTGCTGCCGATCC--GGCCGTCTTCGCAACAAGAAGACAGGTGTCCCCTCACCCGCGGCGACTCAGCTT
ATACAACACTCGATTAACTCTAAT---------CT---------GTTCCTGCTAAGCTTGGCCTAGTCACCACC-CATAT
CTTAATTCTCC-----CTTTT-CGCGCCCGCGCCC------------GCGCACGGCTCTCGTCCCTCCCTGTC----GCC
ACTGCCG-------ACCTTGTCCTCA--------TCCTCGGCACCTTCT--CCCCCTTTAAAATCCCAACCATCTCCCT-
-CCCCA------TCAAGCCTCACGCACCACAACAT-------CCA--------------------------------TCG
ATCC----AGCGATCATCCATCCTCAC-------GCACACACACGAGGCAGGCAGAGAGA------GAGAGCT---AGGA
GCA-GAGATGGTGAAGATTCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GGCGGGCGGC---ATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGCGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTGGTGCAG
AAGCGCCGGGGGCCGGACGACGACG---------AC---------GTGGTCGAGGCCATCCTGGTGAAGGTCTGCACCGC
CGGCGGCGCGTGGCAGCACGACGTCTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGCTCTGGCCCAGGGAGCAGCGGCTGCTGTACCGGGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTCCTCCTGGAGGACCCGGCCTTCACCGAGAGGAAGCTAAGGTCCACCACCCTCGCGCA
GCTCATGGGGGTGCCATGCCATTCGTTCATCCAAGTCTA-GTATAGAACAGATGAGCA----------------TCTCGC
GGTTTGTTTGGGCGACGATCTGCT---AGGTGTGTTAACTGAGTGTTAGCAGCGCTCATTTCTTTCTTCAGAGTTTTTCT
TGGGGGTTTAATTCAGGGCTTGGATTCGGCCGGTTGAATCAAAACATGTGTATCGTTAGGATACAAAAAATACAGT-ACA
GTACATGTTGTAAATTACTCTAATTTGTA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TAAGGAGTTCGCAATGACAATGACTATGTTGTGTATAAAAGTGT----
AC-----ATGCGTGTGCTCATTCACTGTGACTGGCTCATCTACTCTCTTCTGACAAAGTTAGCAATACAGTTCACATGAT
GCTACACACGCA-TCTCTTGCAGTCTATTTGTGTGCATAT---ATTCTTCAGATGAAATTAGCAATACAGTTCACAATGT
GCTACACATA---CAGTCTGACAGAATTAGCAGTACAATTCACACTGTGCTAGCACATACTCCATGAACATTGCTGGTGG
AGTATGTACAGTGTGAATTGGGAGTACTGTCTACTTGTAGCAATTTTCTCCACCAGCACGT--ACTGATGTACATCCATT
CTTCATATCA-AAATTGACCTATGGCAAGCAGCAGAGCAGGTTTACGGTTACCAAACATGTAACCGCCAGCTCCCCCGGA
CAAAA----------------GCCGGCCTGCTTTAACGGGCAGCTCACCGGCCGGAACTACCCCGCAGCACCCACCGACC
AGTGGCGAAAACGTCGGGTGGATCGGACATG----GCAATCGTCAGTGCTACGGAACCGGAGCATAATGCTAGCTGCTCT
CACGGTTTCCGGTAACTGCCCCGGGAATCAGATGCCGGCCGGCCGGCGACCCGCCTCTCGCCAAAATTTCACCGT
>chr3D_511
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------TAAAGAAATGGGACGGAACGACAAAGT----AACTAACCTGCAGCCGGTG
AGGCGATTCCGTCGGCCCC-GCCATTCATGCAGAT---------GCA-----GAGACCG----CGTTG-----------C
CACCTCCCCATGTGCTGCCGATCC--AGCCGTCTTGACAAAGAGCAGACAGGTGTCCCCTCACCCGCGGCGACTCAGCGT
ATACAACACTCGATTAACTCTAATCTGTTCCTGCT---------ATTCCTGCTAAGCTTCGCCTAGTCACCATC-CATAT
CTTAATTCTCC-----CTTTT-------CGCGCCC------------GCGCACGGCTCTCGTCCCTCTCTGTC----GCC
ACTGCCG-------ACCCTGTCCTCA--------TCCTCGGCACCTTCT--CCCCCTTTAAAATCCCAACCATCTCTCCA
ACTCCA------TCAAGCCTCACGCACCACAACTC-------C-----------------------------ATCCATCC
ATCC----AGTGATCATCCATCATCACGCGGC-----------------------AGAGAAACAGAGAGAGCGCGGCAGA
GGAGGAGATGGTGAAGATCCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GGTG---GGCATCGGCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGCCCGGGCGGGATGCTGTTGCAG
AAGCGCCGGGCGCCCGACGACGACGGCTGCGACGAC---------GCCGTCGAGGCCATCCTGGTGAGAGTATCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCAGCCTGTGGCCCAGAGAGCAGCGGCTGCTGTACCGTGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTACTCCTGGAGGACCCCGCCGTCACCGAGAGGAAGCTCCGGTCCACCACCCTCGCGCA
GCTCATGGGGGTGCCATGCCATTCCTTCATCCAAGTCTGAGAAA-----------CCCAC--------------------
--------------------------------------------------------------------------------
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>chr3B_511
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------------------------------TAAAGAAATGGAGACGAACGACAACAAACCTAACCAATTTGCAGCCGGTG
AGAGGATTCCGTCGGCCCC-GCCATTCATGCAGAT---------GCA-----GAGACCG----CGTTG-----------C
CACCTCCACATGTGCTGCCGATCT--CGCCGTCTCAGC-AACAGCAGACAGGTGTCGCA----------CAACTCAGCGT
ATACCACACCCGATTAGCGCTAAT---------CT---------ATTCCCGCTAAGCTTCGCCTAGTCAGCACC-CATAT
CTTAATTCTCC-----CTTTT-CGCGCCCGCGCCC------------GCGCACGGCTCTCGTCCCTCCCTGTC----GCC
ACTGCCG-------ACCTTGTCCTCA--------TCCTCGGCACCTTCT--TCCCCTTTAAAATCCCAAGCATCT-----
-CTCCG------TCAAGCCTCACGCACCACAACAT-------CCA--------------------------------TCG
ATCC----AGCGATCATCCAGCATCAC-------GCATACACACGAGGCAGGCAGAGAGAAGCAGAGAGGACTCGGCAGA
GGAGGAGATGGTGAAGATTCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GACC---GGCAGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTGGTGCAG
AAGCGCCGGGGGCCGGACGACGACG---------CC---------GTGGTCGAGGCCATCCTGGTGAAGGTCTGCACCGC
CGGCGGCGCGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGAACTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGCTCTGGCCCAGGGAGCAGCGGCTGCTGTACCGAGGCAGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTCCTCCTGGAGGACCCCGCCGTCACGGAGAGGAAGCTCCGGTCCACCACCCTCGCGCA
GCTCATGGGGGTGCCCTGCCATTCCTTCATCCAAGTCTA-GTATAGAACCCGCACACCCTCTCCTGCCGGCTGTTCTCGC
GGTTTGTTTGGGCGAAGATCTGCT---AGGTGTGTTAACCGAGTGTTAGCAGCGTTCATTTCTTTCTT------------
-----------------------------------------------GTGCAACGTTAGGATACAATACAGCACAGCACA
GTACATTTTGTAAATTACTCTAGTTTGTA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TAAGGAGA---CAATGACAGTGACTATGTTGCGTATAAAAATGT----
ACGGTGCATGCGTGTGCTCATTCTCTGTTGCTGGCTCGTTTACACTCTTCTGACAAAATTGGCTACACAGTTCACACTAT
GCTACACATGCA-TCTCTTGCAGTTTATCTGTGTGTACATAGCATTCTTCTGACGAAATAAGCAATACAGTTCATATTGT
GCTACACATG---CAGTCTGACAGAATCAGCAGGACAATTCACACTGTGCTAGCACATACTCCATGAACAGTGCTGGTGG
AATATGCACAGTGTGAGTTGGGAGTACTATCTACGTTTAGCAATTTTCTCCACCAGCATGT--ACTGATGTACATCTATT
CTTTCATGTCGAAATTGACCTATGGCAAGCAGCAGAGCAGGTTTACGGTTACCAAACATGTAACCGCCAGCTCGCCTGGA
CAAAAGCTGGCCTGGACAAAAGCCGGCCTCCTTTAACGGGCAGCTCACCGGCCGGAACTACTCCGCAGCACCCACCGACC
AGTGGCGAAAACGTTGGGTGGAT----CATG----GCAATCGTCAGTGCTACGAAACCGGAGCATAATGCTAGCTGTTGT
TACGGTTTCCGGTAACTGCCCCGGGAATCGGA----GGCCGGCCAGCGACTCGCCTCTCGCCAAAATTTCAGCGT
>chr3A_533
AACAACAAAACTA-------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------AACCTGCAGCTGGTG
GGATGATTCCGTCGGCTCCAGCCATTGATGCAGTT---------GCAGGGCGGAGACCGCGTTCGTTG-----------C
CACCTCCCCATGTGCTGCCGATCT--CGTCGCCTCAGC-AACAGCAGACATGTGTCGCCTCACTCGTGTCGACTCAGCGT
CAACAACGCTCGATTAACGCTAAT---------CT---------GTTCCCGCTAAGCTTCGCCTAGTCACCACC-CATAT
GGCCATATAGGAGTATCTTTT-------CGCGCCG------------GCGCATGGCTCTCG----TCCCTGTC----GCG
ACTGCCG-------ACCTTGTCCTCG--------TCCTTTTAGGATCCGCGTCCCCTTTAAAATCCCAAGCATCT-----
-CATCA------TCAAGCCTCAGACAGCACCACAC-------CCAGAGAGCAGAGAGCAGAAGCAGCTAGCTATCTATAC
ATCGAGTGATCGACCATCCATCGTCACGCACACTGCTCACACGCGAGGCAGGCAGAGAGAAACAGAGAGAGCT---AGGA
GCA-GAGATGGTGAAGATTCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GGCG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGCCCGGGCGGGATGCTGGTGCAT
AAGCCCGACGACGACGGCTGCGACG---------AC---------GCCGTCGAGGCCATCCTGGTGAAAGTATCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCGTCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CTGGGCTCTGGCCCAGGGAGCAGCGGCTCCTGTACCGGGGCCGGGAGAGGGACGACGGCGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTGCTCCTGGAAGACCCTGCCGTGACCGAGAGGAAGCTGAGGTCCACCAGCCTCGCGCA
GCTCATGGGGGTGCCCTGCCACTCCTTCATCCAAGTATA-GAAA-----------CCCACAC------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_542
--------------------------------------------------------------------------------
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-------------------------------------------------------------AACTAACCTGCAGCTGGTG
GGACGATTCCGTCGGTCCA-GCCATTCATGCAGAT---------GCAGGGCGGAGACCG----CGTTG-----------C
CACCTCCCCATGTGCTGCCGATCT--CGTCGCCTCAGC-AACAGCAGACATGTGTCGCCTCCCTCGCGGCGACTCAGCGT
A-ACAACGCTCCAGAAACGCTAAT---------CTATTCCTGCTA--------AAGCTTCGCCTAGTCACCAC-------
----------------------------CGCGCCC------------GCGCACGGCTCTCG----TCCCTGTC----GCG
ACTGCCTGAGCTTCACCTTGTCCTCA--------TCCTCGACACCTTCT--CCCCCTTTAAAATCCCAAGCATCT-----
-CTCCA------TCAAGCCTCACCCACCACTACAC-------CCACAGAGCAGAG------AGCAGCTAGCTATCTATCC
ATCGTGTGATCGATCATCCATCGTCCCGCACACTGCACACACAAGAC----------------------AGCGCGGCAGA
GGAGGAGATGGTGAAGATTCCTAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCAC---GGTG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTTGTGCAG
AAGCGCCGGGCGCCGGACGACGACG---------AC---------GTGGTCGAGGCCATCCTGGTGCGGGTGTCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGTTGTGGCCCAGGGAGCAGCGGCTGCTGTACCGGGGCCGGGAGCGAGACGACGGTGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTGCTCCTGGAGGACCCTGCCATGACCGAGAGGAAGCTCCGGTCCACCACCCTCGCGCA
GCTCATGGGGGTGCCCTGCCACTCCTTCATCCAAGTCTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3D_552
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------CAGCCGGTG
AGAGGATTCCGTCGGCCCC-GCCATTCATGCAGAT---------GCA-----GAGACCG----CGTTCGTTACCACTTAC
CACCTCCCCATGTGCTGCTCCGTTTCCGTCGCATCAGC-AACAGCAGACATGTGTCGCCT----------AACTCAGCGT
ATACCACACTCGATTAACGCTAAT---------CTATTCCCTCCATTCCCGCTAAGCTTCGCCCAGTCACTCGTGCATAT
CTTAATTCTCCT----TTTTT-------CGCGCCA------------GCCCACGGCTCTCG----CCCCTCTCTGTCGCG
ACTTCCA-------ACCGTGTCCTCA--------TCCTCGGCACCTTCT--CCCCCTTTAAAATCACAAGCATCT-----
-CTCCA------TCAAGCCTCACGCAGCTCAACAC-------CCAGAGAGCAGC------------TTAGCTAGCCATCC
ATCGG-------------CATCACCAGTT------------CACACGCGAGGCAGAGAGGAACAGAGAGAGCGCGGAGGA
GCA-GAGATGGTGAAGATTCCTAGCCCGAGGAGGCTGTTCAGGAGCCGGTCCAAGAGCATGGTGGTG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGCGGATCGAGTGGGAGGTTCGGCCGGGCGGGATGCTGGTGCAG
AAGCGCCGGACGCCGGACGATGACG---------AC---------GTGGTCGAGGCCATCCTGGTGCGGGTGTCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTGCTGTCGCTGGCCA
CCGGGCTGTGGCCCAGGGAGCAGCGGCTGCTGTACCGGGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTGCAGGACAAGGACAAGGTGCTCCTCCTGGAGGACCCCGCCGTCACCGAGAGGAAGCTCCGGTCCACCAGCCTCGCGCA
GCTCATGGGGGTGCCCTGTCACTCCTTCATCCAAGTCTAAGAAA-----------CCCACGCCCCATCAGCTGTTCTCGC
TCTTTGTTTTGGGCGAAGATCGGTTTCAGGTGTGCTAGTTAAGTGTTAGCTGCATTCTTTTCTTTCTTTAGA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_715
CCTG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CCATTCCTGCTAAGCTTCGCCTAGTCACCACA-CATAT
CTTAATTCTCC-----TTTTT-------CGCGCCA------------GCCCACGGCTCTCG----TCCCTCTCTGTCGCG
ACTTCCA-------ACCGTGTCCTCGTCCTCGCCTCCTCGGCACCTGCT--CCCCCTATAAAATCCCAGGCGTCT-----
-CCCCG------TCAGGTCTCACGCAGCACAACACCGAGAGGCCAGAGAGCAGC------------TTAGCTAGCCATCC
ATCGG-------------CATCGTTAGTTCAT-------CACACACGCGAGGCAGAGAGGACAAGAGAGAGCGCGGAGGA
GCA-AAGATGGTGAAGATCCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCAAGGAGCAC---GCTG---GGCGGCGGCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTGGTGCAG
AAACGCCGGGGGCCGGAAAACGACG---------GCTGCGACGCAGAG---GAGGCCATCCTGGTGAGGGTGTCCACCGC
CGGCGGCGGGTGGCAGCACGACGTGCCCATCGACGCCACCGCCACCTTCGGCGACCTCAAGGTGCTTCTGTCGCTGGCCA
CCGGCCTCTGGCCGAGGGAACAGCGGCTACTGTACCGAGGCCGAGAGCGGGACGACGGTGACCACCTGCACATGGCCGGC
GTCCAGGACAAGGACAAGGTGCTCCTCCTGGAGGACCCCGCCGTCACCGAGCGGAAGCTCCTGTCCACCAGCCTCGCGCA
GCTCATGGGGGTGCCCTGCCATTCCTTCATCCAAGTCTAAGAAA-----------CCCACGCCCC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr3A_786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CGCGCCC------------GCGCACGGCTCTCG----TCCCACTCTGTCGCG
ATTTCCA-------ACCGTCTCCTCA--------TCCTGGGCACCTTCT--CCACCTTTAAAATCCCAAGCATCT-----
-CTCCAACTCCGTCAAGCCTCACGC--CACAACAC-------CCAGAGAGCAGC------------CTAGCTAGCCACCC
ATCGG-------------CATCACCAGTTCAC-------CACACACGCGAGGCAGAGAGGAACAGAGAGAGTGCGGAGGA
GCA-GAGATGGTGAAGATCCCGAGCCCGAGGAGGCTGTTCAGGAGCCGGTCGAGGAGCAC---GGTG---GGCGGCATCG
GCGGGGTGGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTGGTGCAG
AAGCGCCGGGCGCCCGACGACGACG---------GCTGCGACGACGCCGTCGAGGCCATCCTGGTGAGAGTATCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCGTCGACGCCACCGCCACCTTCGGCGACTTCAAGGTTCTGCTGTCGCTGGCCA
CTGGGCTGTGGCCCAGGGAGCAGCGGCTGCTGTACCGAGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGGCCGGC
GTGCAGGACAAGGACAAGGTGCTCCTCCTGGAGGACCCCGCCGTCACGGAGAGGAAGCTCAGGTCCACCAGCCTCGCGCA
GCTCATGGGGGTGCCCAGCCATTCCTTCATCCAAGTCTAAGAAA-----------CCCACACCC-ATCAGCTGGTCTCGC
TGTTTGTTTGGGCGAAGACCGGT----------------------TTAACTGCATTCTTTTCTTTCTTTAGAGTTTTTAT
----GGGTTCAATCAGGGCTTAGATTTGGCCGATTGAATCGAAAAACGGGCACCGTTAGGATAC----AATACAGT-ACC
TTACTTGTTGTAAAATATTGTAATTTGTA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr3A_830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTCCTCA--------TCCTCGGCACCTTCT--CCACCTATAAAATCCCAGGCGTCT-----
-CTCCA------TCAAGCCTCACGCAGCACAACAC-------CCAGAGAGCACC------------TTAGCTAGCCATCC
ATCGG-------------CATCATCTGTTCAT-------CGCACACGCAAGGCAGAGAGGAACAGAGAGAACGCGTCAGA
GGAGGAGATGGTGAAGATCCCGAGCCCGAGGAGGCTGTTCCGGAGCCGGTCCAAAAGCAC---GGTG---GGCATCGGCG
GCGGGGTCGACATGTGCGCCATGGTGGCCGAGCACGAGAGGATCGAGTGGGAGGTGCGGCCCGGCGGGATGCTGGTGCAG
AAGCGCCGGGGGCCGGACGACGACG---------GC---------GTGGTCGAGGCCATCCTGGTGCGGGTGTCCGCCGG
CTGCGGCGGGTGGCAGCACGACGTGTCCATCGACGCCACCTCCACCTTCGGCGACCTCAAGGTGCTGCTGTCACTGGCCA
CCGGGCTGTGGCCCAGGGAGCAGCGGCTGCTGTACCGGGGCCGGGAGCGGGACGACGGCGACCACCTGCACATGACCGGC
GTGCAGGACAAGGACAAGGTGCTGCTCCTGGAAGACCCCGCCGTCACGGAGAGGAAGCTCCGGTCCACCAGCCTCGCGCA
GCTCATGGGGGTGCCCTGCCATTCCTTCATCCAAGTCTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>SNPs
S--SSS-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S---------------S----S----------------S---------S--
------------S----------S---------SSSSSSSSSSS--S---------------------------------
---------------------------------S------------S--------------------------S-S----
S-----S-----------S--SS---------------------------------------------------------
---------S-SS-S--SS-SS--------------------------S-------------------------------
-------------------------------------S-S----------------------------------------
-------------S------------------------------------------------------------------
-------------------------------------------------------------------S-S----------
---------------------S----------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------------S----------------S-S-S--------S--------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S--------------------SSSS
-----------------------SS-------------------S----SS----------------------------S
------S--SSSS----S-----------S------------------------------------------------SS
----------SSS----------------------------------------SS-------------------------
-------------S-----------------------------------------------SS-----------------
------S---------------------S-S-------------------------------------------------
-----------------------S--------------------------------------------------------
-S--S--------------------------SSSS--------S------------------------------------
--------------------------------S---------------S--------------------------
>forward_357
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTAGATCCGCGTGCTTAGCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_2105
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTGTTGCTGGCTCGTCTACA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
