>input_sequence_78583
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--------------------------------------------------------ATGGAGGGCAGGATGTTCGGGCTG
GAGACCCCGCTGATGACGGCGCTGCAGCACCTGCTGGACATCCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCTCCGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACGTGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTGCCGGAGAACGCCGACACGGAGAAGATCTCCGCGGTGTGCCGCGACGGGGTGCTCA
CCGTGTCCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGA---------
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--------------------------------------------------------------------
>chr3D_1_TraesCS3D01G114800
GAGCCGGCACCGTGCGACCCGATGGGTCAGACGGGTCGACCCAGTCGAATCGCTAGGCCCTAGTCACTGCTGGCCGACCC
TGTTCGAGACGCCCCTGGACACATCTACGGTATATGAACTCGATCAATTCTGTTGGAGATGCGTTGTACACAAGAAGCAG
ACAGAGAGACAGGTGGATTGATTGTTACGTCAACTACTAGTACATGCACGTAGAAAAACCAGCGTGTCGTTCGTGTCTTG
GTCACCGCCGAGCTCGCCATCCCGGTCACTATACTATTCCTCTCTAACTTGTACAGCTCGCTGTCCCAGTGGTTTTCCAG
TCTTCAGATTGTGATCACTGGAGTCATGAATTTTCCATCTTAATCTTGGGTCGGCCTCGTATACCCAATGGGTCAGTGAG
GCCATAAATTTTTGATGAAATGGGTTGACCCATGGCCTCACATATTGACCTTGGGGCCACGGGGCCAGGTCCGGGCCATT
CCCATCTTGAATTATCTTGCCCAGATGCTAAATTCTTTGTTAACGAGTACTACACATCTTTGTTATTTCGAGGTGACTGA
CATTTATCCCAGTTTGTTCCTCACCACCTTGCAATGCTCCTAGTCTCTGAATTCGACAGAAACCAGCACTGGTCGCAGAT
ATGCACGGGAGGATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAAAATAAAAGTTAACGGAAAA-----------
-----TATCTCTGCTCCTA--------AGAAGCGAGACCAAACCAGCCAC----------------------TCAACATT
TTCATTTGTTCCTAAAGAAAGACCGTTGAT------------GGAGCTCTAGAACTTTCCACGTTGCCGCATCCCACGGG
TTCCACCAAGTTTCAGAAGTTTCCGTCACCTTCTAGA---------------C---------TCCGGCCACCGATATAAA
CTCCCTCCTCCTC----CCGTCGCATCATCACCAACGCAGTCCACAAAAA----AAAT--CAGCAAACAATCCAACGC-A
-GTCCAATCCGAGGAGA--CCGACCGATCGAGCTCGGAGATCAGCAGCGACCGAGAATGGAGGGCAGGATGTTCGGGCTG
GAGACCCCGCTGATGACGGCGCTGCAGCACCTGCTGGACATCCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCTCCGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACGTGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTGCCGGAGAACGCCGACACGGAGAAGATCTCCGCGGTGTGCCGCGACGGGGTGCTCA
CCGTGTCCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGACTCTGAG
AG----ATGGATGGGACGACGGAGCCAGAGAGA-GGTCCTTTGCTTGCACGCCTGATCGAAGCTGAGTGGG---------
--TAGTGATCGATGATTAGGGAGTGAGTTTCCTGAGATGCGTGATGTGTG---TGTGTTTTCTATCTCTGCTCGTATGGT
GTCCGAGAGTGTTGTGTGACTAGTTTAAGCTTTCAGGGCGCAATTTCAATGAAATTTCTGAAATATCATTAACTTTGGTT
CATACTGAAATAATTGCCTTTCTTCCA----------------------------------------AAATATCTCAGTA
ATCTTGGTGGCAGACACAACTTCAAATAATTCTAAATCATTTTTTTGTTTTTA--AAAATATTTGTTTGGATCCCAAAAT
CAAATTTTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGTCACTGGATTTCAGTGGAAGTCGGTTAATTCG
CCCATGG-------------------------------------------------TTGAAAGG----TGTTTGTGGTGG
TTTTTACTAGGTATATAAT-----------CAGAATTTTGGATGTACATTTGCAAGATACATTTCAGC------------
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---------------------------------------------AACTTTATAATACAAAATGGAAGG-AAATTTTTTA
AAATCATTAACCAAAAAAGAGTTGAATCAACGTTAATAGTTTTCAAAATTCATTCTATACTTATAAAAGATAAAGTAATT
CCATATTGTAAGG-CGAGGTCGGACCAAGCATCA---------GTTAGATTTAGTATAGACTTTTATGTTTGAAAAAATT
TAGGTG--TTCTTGTTCAAACATGTAAATTGCTTGTCAAGGACGCAATACTATTATTTCAAAGGAGGATGATCTTATGAA
TGACGACTCCAAAATAGGATGATAAATTGGTCTAGAGAATTTCTTGGCATAAAATTAGTTTACAATATAATTTTCTTGAT
GAGATTGATTTATCGCATGGAATGAAGTCAATCTCATGAAGA--GTTTACTTCGGCATAATAGAAAGTCAAGAAAACACC
TACTCCAGTTTGTAGATGTGTTTTCACGCCCTTGATCTCATTGTCGCGATCTTCAAGGGCCATGGCCC
>chr3D_489
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--------GAGTTGTCTTGCCCAGATGCTAAATCTTTGT--------TACTACACATCTTTGTTATTTGGAGGTGACTGA
CATTTATCCCAGTTTGTTCCTCACCATGTTGCGGTGCTCCTAGTCCCCGAATTCGACACAAACCAGCAGTGATCGCAGAT
ATGCGCGGGAGGATTGGAGAAGTTTCTGGAGA------------TCCAAAAATAAAAGTGAAAGGAAAAGCGCAGAGCTT
AAAAATATCTCTGCTCCTATCCGCTCCAGAAGCGAGACACTTGTCACGACAGGTCACAGACCTGGCCACTCATCAACATT
TTCATTT--TCCTAAAGAAAGACCGTTGAT------------GGAGCTCTGGAACTTTCCGCGGTGCCGCATCCGGCGGG
TTCCACCACGTTTCAGAAGCTTCCGTCACCTTCCAGAATCCAGACTCCCCGCC---------TCCGGCCACCGATATAAA
CTCCCTCCTCCTC----CCGTCGCATCATCACCGAAGCATTCCACAAAA--------T--CAGCAAACAATCCAACGC-A
-GTCCAGCCGGAGGAGA--CCGATCGATCGAGCTCGGAGATCAGCAGCGAGCGAGAATGGAGGGCAGGATGTTCGGGCTG
GAGACCCCGCTGATGACGGCGCTGCAGCACCTGCTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGTGCCACCGGCGG
TGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACGTGCCGGGGCTGGGCTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTCATCAGCGGCGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTGCCCGAGAACGCCGACACGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTCTCCGTCCAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
-G----ATGGATGGGACAACCGAACCAGAGAGAAGGTCCTTTGCCTGG-CGCCTGATCGGAGCTGAGTGGG---------
--TAGTGATCGATGATTAGGGAGTGAGTTTCCTGAGATGCGTGATGTGTC---TGTGATTTCTATCTCTGCTCGCATGGT
GTCCGAGGGTGTTGTGTGGCTAGTTTTCTCTTTCAGTGCGCAATTTCAATGAAATTTCGGAAATATCATCAATTTTGG--
-------------------TTCTTCCA----------------------------------------AAATATTTCAGTA
ATCTTGGTGGCGCACACAACTTCAAATAATTCTAAATCATCTTTTTGTTTTTCTCAAAATATTTGTTTGGGTCCCAAAAT
CAAATATTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGTCACTGGATTTCAATGGAAGTCAGTTAATTCG
CCCATGTTTTTTTTTTGAGTTGTTGATTGTTTTT-AGATAGCTACGTGCTTATTCCTTGAACGGTGTCTGTTTGTGGTGG
TTTTTACGCTGAAATGAAAAACGTAATGCCCAGAATTTTGGATGTACATTTGCAAGATACAATTGAGCATTACGTTTATG
TATACTTCCTCAATTTCAGCGTATCCCAAAATTCATCTG----------TTTGACCAACTAGATGTGGGTTATATGTAAC
AAAAATTATACCATCGAATTCATATTCAAAAGAAGTTTTCAACGGTATAA-TTTTTAACTC-CAAAAATACATATCATTG
ATCTAATATGGTCAAACTTAAATTTTGAAATCCGTTTAAGTCCAAAAATACATATCATTGATCTAATATGGTAAGTTAAA
TCTTGAAATCCATGCACGTGTCTTATACATTGGAATAGAGGAAGTAACTTTATAATAGAAAATGGAAGGCAAAATTTCAA
AAATCATTAACGAAGAAAGAGTTGAATCAAAGTTACTAGTTTTTAAAATTCATTCTATACATATAAAAGATAAAGTAATT
CCATATTGTAAGGTTGAGGTCGGATCAAGCATCATATTTCAAGGTTAGATTTAGGATAAACTTTTCTGTTTAAGAAAATT
G-GGTG--TTCTTGTTCAAACGTGTAAATTGCTCCTCAAGGGCGCAATACTATTATTTCAAAGGAGAATGATCTTATGAA
TGACGACTCCAAAATAGGATGATAAATTGGTCTAGAGAATTTTTTGGCATAAAATGAGTTTACAATATAATTTTCTAGAT
GAGATTGACTTATCGTATGGAATAAAGTCAATCTCATGAAGA--ATTTACTTCAGCATAATAGAAAGTCAAGAA------
--------------------------------------------------------------------
>chr3A_528
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-----------------------------------------------TACTACACATCTTCGTTATTTTGAGGTGACTGA
CATTTATCCGAGTTTGTTCCTGACCATGTTGCGATGCTCCTAGTCCCTGAATTCGACACAAACCAGCAGTGATCGCAGAT
ATGCACGGGAGGATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAAAATAAAAGTGAAAGGAAAA-----------
-----TGTCTCTGCTCCTA--------A----------------------------------------------------
---------------AGAAAGACCG-TGAT------------GGAGCTCTGGAACTTTCCGCGTCGCCGCATCCCGCGCG
TTCCACCAAGTTTCAGAAGCTTCCGTCACCTTCCAGAATCCGGACTCCCCGCCCCACGTCAT------CACCGATATAAA
CTCCCTCCTCCTCCCGTCCGTCGCATCATCACCAAGGCATTCCACAAAAAAAAAAAAT--CAGCAGACAATCCAACGC-A
-GTCCAATCCGAGGAGA--CCGACCGATCGAGCTCGGAGGTCAGCAGCGAGCGAGAATGGAGGGCAGGATGTTCGGGCTG
GAGACCCCGCTGATGGCGGCGCTGCAGCACCTGCTGGACATTCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGCCGG
CGAGAAGCAGGGCCCGACGCCGACGCGTGCCTACGTCCGAGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGGGAGGAGGAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGACAACGCCGACATGGAGAAGGTCTCCGCCGTTTGCCGCGACGGCGTGCTCA
CCGTCTCCGTGCAGAAGCTGCCGCCGCCAGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
-GATGCATGGATGGGACGACCGAACCAGAGAGA-GGTCCTTTGCCTGCACGCCGGATCGAAGCTGCCGAGTGGGTAGTGA
ACTAGTGATCGATGCTTAGGGAGTGAGTTTCCTGAGATGCGTGATGTGTCTTGTGTGTTTTCTATCTCTGCTCGTATGGT
GTTCGAGAGTGTTGTGTGACTAGTTTTCGCTTTCAGTGCACAATTTCAATGAAATTTCTGAAATATCATCAACTTTGT--
-------------------TTCAAACTTACCAGCTCAAAATAAGTGACTCAAGTTTGTACTAACTTGAAGTGTCTCTTTA
ATCTTGGGGGTGCACACAACTTCAAATAATTCTAAATCATCTTTTTGTTTTT-TCAAAATATTTGTTTGGATCCCAAAAT
CAAATTTGAGTGGACA-T-AAGTCCCCTGTCTGAAATGAAAAACAGAGCCACTGGATTTCAATGGAAGTCAGTTAATTCG
CCCATGG-------------------------------------------------TTGAAAGGTGTCTGTTTGTGGTGG
TTTTTACTACGTATATAAT-----------CAGAATTTTAGAGTA-----------------------------------
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>chr3B_734
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-------------------------------------CCAAACCAGCCAT----------------------TCAACATC
--CATTTTTTCCTAAAGAAAGACCGTTGATGGAGTCCCCACGGGAGCTCTAGAACTTTCCGCGTTGCCGCATCCCGCGCG
TACCACCACGTTTCAGAAGTTTCCGTCACCTTCCAGAATCCAGACTCCCCGCC---------TCCGGCCACCGATATAAA
CTCCCTCCGCCCC----CCGTCGCATCATCACCGAGGCATTCCACAAAA--------T--CAGCAAGCGATCCAACGC-A
-GTCCAATCGGAGGAGA--CCGATCGATCGAGCTCGGAGATCAGCAGCGAGCGAGAATGGAGGCCAGGATGTTCGGGCTG
GAGACCCCGCTGATGGCGGCGCTGCAGCACCTGCTGGACATCCCGGACGGCGAGGCCGGCGGGGCCGGAAACGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACGTGCCGGGGCTCGCGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTCATCAGCGGCGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAATGCTGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTCTCCGTGGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
-G----ATGGATGGGACGACCGAACCAGAGAGAAGGTCCTTTGCCTGCACGCCTGATCGAAGTTGAGTGGG---------
--TAGTGATCGATGATTAGGGAGTGAGTTTCCCATGATGCGTGATGTGTC---TGTTTTTTCTATCTCTGCTCGTGTGGT
GTCCGAGAGTGTTGTGTGGCTAGTTTCCGCTTTCAGTGCGCAATTTCAATGAAATTTCGGGAATATCATCAGTTTTGG--
-------------------TTCTTCCA----------------------------------------AAATACTTCAGTA
ATCTTGGTGGCGCATACAACTTCAAATAATTCTCTATCATCTGTTTGTTTCT-TCAAAATATTGGTTTGGATCCCAAAAT
CAAATATTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGTCACTGGATTTCAATGGAAGTCAGTTAATTCA
CCCATGA--TTTTTTTGAGTTGTTGATTGTTTTTGAGATAGCTACCCGCTTATTCCTTGAAAGGTGCCTGTTCGGGGTGG
TTTTTACTACGTGTAGAAT-----------CAGAATTTTGGATGTACATTTGCAAGATACAATTGAGCATTACGTTTATG
TTCCTC-CCTCAATTTCAGCGTATCCCAAAATTCATCTTCGACTATATATTTGACCAACTAGATGTGGATTATATGTAAC
AAAAATTACACCACAGAATTCATATTCAAAAGAAGTTTT-AACGGTATATTTTTTTAAGTCACAAAAATACATATCATTG
CTCTAATATTGTCAAAGTTAAATTTCGATATCCGTGCA------------------------------------------
------------------CGTCTTATACATTGGAATAGAGGAAGTAACTTTACAATAGAAAATGGAAGGCAAAA-TTTTA
AAATCATTAACCAAAAAAGAGTTGAATCAAAGTTCATAATTTTCAAAATTCATCCTATACTAATAAAAGATAAAGTAATT
CCATATTGTAAGGTTGAGGTCGGACCAAGCATCGTAGTTCAAGGTTAGATTCAGGATAGACTTTTCTGTTTGAAAAAATT
G-GGTGCTTTCTTGGTCAAACAGGTAAATTGCCAATCAAAGACGCAATACTATTATTTCAAAGGAGAATGGTCTTATGAA
TGACGACTCCAGAATGGGATGATAAATTTGTCTAGAAAATATTTTGGCATAAAATTAGTTCACAATATAATTTTCTTGAT
GAGATTGACTTATCATATGGAATAAAGTCAATCTCATCAAGAGCGTTTACTTCAGCATAATAGAAAGTTAAGAA------
--------------------------------------------------------------------
>chr3B_822
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-------------------------------------------------------------------------------G
TTCCACCACGTTTCAGAAGTTTCCATCACCTTCCAGA---------------CAGT-----CTCCGGCGACCTATATAAA
CTCCTTCCTCCTC----CCGTCGCATCACAACCAAAGCATCCCACAAAA--------TATCAACAAGCAGTCCAACGC--
---------CGAGGAGA--TCGATCAGCGAGCT-------------------GAGAATGGAGGGCAGGATGTTCGGGCTG
GAGACCCCGCTGATGACGGCGCTGCAGCACCTGCTGGACGTCCCGGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGGGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTCGGGTCCGGCGACATCCAAGTGCAGGTGGAGGATGAG
CGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTCTCCGTCGAGAAGCTGCCGCCGCCGGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
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>chr3B_822
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-------------------------------------------------------------------------------G
TTCCACCACCTTTCAGAAGTTTCCATTACCTTCCAGA---------------C-C-CCCGCCTCGGGCGACCTACATAAG
CTCCCTCCTCCTCG---C-ATCGCATCACCACCGAAAAATTCCACAAAA--------T-TCAACAAACAATCCAAGGC-A
AGCCCAACCCGAGGAGA--TCGACCGAGCTCGA--------GATCAGCGAGCCAGAATGGCGGGCATGGTGTTCGGCTTG
GATGCCCCGATGATGACCGCGCTGCAGCACCTGCTGGACATCCCGGACGGCGAGGCCGGCGGGCACGGCAACGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTGGGGTCCGGCGACATCCAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTCATCAGCGGTGAGCGCAGGAGGGAGGAGAAGGAAGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGACAACGCCGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACAATCCAGGTCCAGGTCGCCTGAGA-------
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>chr3B_822
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-------------------------------------------------------------------------------G
TTCCACCACCTTTCAGAAGTTTCCATTACCTTCCAGA---------------C-CCCCCGCCTCTGGCGACCTACATAAA
CTCCCT-CTCCTCG---CCATCGCATCCCCACCAAAGCATTCCACAAAA--------T-TCAACAAGCAATCCAACGC-A
-GTCCAACCTGAGGAGA--TCGATCGAGCTCAA--------GATCCGCGAGCGAGAATGGCGGGCATGGTGTTCGGCTTG
GAGAACCCAATGATGACGGCGCTGCAGCACCTGCTGGACATCCCAGATGGCGAAA---------CCGGTGCCCCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCTTTCGTGGTGGACATGCCGGGGCTGGGTTCCGGCGACATCCAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTCATCAGCGGCGAGCGCAGGAGGGAGGAGAAGGAGGACACCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGCGTGCCGCGACGGCGTGCTCA
CCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
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--------------------------------------------------------------------
>chr3B_822
GTTCA---------------------------------------------------------------------------
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-----CCACCTTTCAGAAGTTTCCATCACCTTCCAGA---------------CTC-CCCGCCTCCGGCGACCTACATAAA
CTCCCTCCTCCTCG---CCATCGCATCCCCACCAAAGCATTCCACAAAA--------T-TCAACAAGCAATCCAACAC-A
-GTCCAACCCGAGGAGA--TCGATCGAGCTCGA--------CATCCGCGAGCGAGAATGGCGGGCATGGTGTTCGGCTTG
GAGAACCCGATGATGACGGCGCTGCAGCACCTGCTGGACATCCCAGACGGCGAGTCCGGCCT---------CGCCGCCGG
CGAGAAGCAGGGCCCGACGC------GTGCCTACGTCCGGGACGCGCGCGCCATGGTGGCCACCCCCACCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTGGGTTCCAGCGACATCCAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGGAGGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTGCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGATGGCGTGCTGA
CCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAG------------------
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--------------------------------------------------------------------
>chr3B_822
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-------------------------------------------------------------------------------G
TTCCACCACCTTTCAGAAGTTTCCATCACCGTCCAGA---------------C-C-CCCGCCTCCGGAGACCTACATAGA
CTTCCTCCTCCTCG---CCATCGCATCCCCACCAAA---TTCCACAAAA--------T-TCAACAAGCAATCC----CAA
-GTCCAACCCGAGGAGA--TCGATCGAGCTCGA--------GATCAGCGAGGGACAATGGCGGGCATGGTGTTCGGCTTG
GAGAACCCGATGATGACGGCGCTGCAGCACCTGCTGGACATCCCAGACGGCGAGGCCGGCAA------CACCGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCTTACGTCCGTGACGCGCGAGCCATGGCGGCAACCCCCGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTTGTGGTGGACATGCCAGGTCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGCAGGAGGGAGGAGAAGGAAGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTGACCGTCGACAAGCTGCCCCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr4D_822
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-------------------------------------------------------------------------------G
TTCGACCACCTTTCAGAAGTTTCCATCACCTTCCGGA---------------CTC-ACCGCGCCCGGCGACCTACATAAA
CGC---CCTCCTCG---CCATCGCATCGCCACCAAAGCATTCCACAAGA--------T-TCAACGAGCGATCCAACGCAA
-GCCCAACCCGAGGAGAGACCGACCGAGCTCGA--------GATCAGCGAGCGAGAATGGCGGGCATGGTGTTTGGCTTG
GAGAACCCGATGATGACCGCCCTGCAGCACCTGCTGGACATCCCGGACGGGGAGGCTGGTGGAGCCGGTGCCGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
AGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGG
CAAGCTGATGCGCAAGTACGTGCTGCCAGAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCA
CCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3D_833
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------TTTCAGAAGTTTCCATCGCCTTCCAGA---------------CTC-GCCGC-TCCAGCCACCTACATAAA
CTC------CCTCG---CCATCTCATCCCCACCAAAGCATTCGACAAAA--------T-TCAACCAGCAATCCAACGCAA
-GACCAACCCGAGGAGA--TCGACCGAGCTCAA--------GATCCGCGAGCGAGAATGGCGGGCATGGTGTTCGGCTTG
GAGAACCCGATGATGACGGCGCTGCAGCACCTGCTGGACATCCCGGACGGCGAGGCCGGCAA------CACCGCCGGCGG
CGAGAAGCAGGGCCCGACGC------GCGCCTACGTCCGGGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTTAAGG
AGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAG
CGGGTGCTGGTGATCAGCGGCGAGCGCAGGAGGGAGGAGAAGGAGGAAGCCAAGTACATGCGGATGGAGCGCCGCATGGG
GAAGCTGATGCGCAAGTTCGTGCTGCCAGAGAACGCCGACATGGAGAAGATCTCCGCCGCGTGCCGCGACGGCGTGCTCA
CCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCGAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAG--------
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--------------------------------------------------------------------
>chr4D_1815
--------------------------------------------------------------------------------
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---------------------------------------------------------AATATTTGTTTGGATCCCAAAAT
CAAATTTTAGTGGACA-TTAAGTCCCCTGGCTGAAAGGAAAAACAGAGTCACTGGATTTCAATGGAAGTCAGTTAATTCC
CCCATGG-------------------------------------------------TTGAAAGGTGC----TTGTGGTGG
TTTTTACTAGGTATATAAT-----------CAGAATTTTGGATGTACATTTGCGAGATACA-------------------
-------------TTTCAGCGTATCCCAACATTCATCTTTGACTATATATTTGAATAACTAGATGTGAGTTATATGTAAC
AAAA-TTATACCATTGAATTCATATTCAAAAGAAGTTTTCAACGGTATAA-TTTTGAAGTCATAAAAATACATATAATTG
ATCTCATATGTCCAAAGTTAAATTTTGAAATTCGTGCC------------------------------------------
------------------TGTCTTATACATTGGAATAGAGGAAGCAACTTTATAATACAAAATGGAAGGCAAAA-TTTTA
AAATCATTAACCAAAAAAGAGTTGAATCAACGTTAATAGTTTTCAAAATTCATTCTATACTTATGAAAGATAAAGTAATT
CCATATTGTAAGGTCGAGGTCGGACCAAGCATT---------GGTTAGATTTAGGGTAGACTTTTATGTTTGAAAAAATT
-AGGTG--TTCTTGTTCAAACGTGTAAATTGCTCGTCAAGGACGCAATACTATTATTTCAAAGGAGAATGATCTTATGAA
TGACGACTCC-AAATAGGATGATAAATTGGTCTAGAGAATTTCTTGGCATAAAATTAGTTTACAATATAATTTTCTTGAT
GAGATTGACTTATCGTATGGAACAAAGTCAATCCCATTAAGA--GTTTACTTCAGCATAATAGAAAGTCAAGAAAACACC
TACTCCAGTTTGTAGATGTGCTTTCACGCCCTTGATCTCATTGTCGCGATCTACAAGGGCCAT-----
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S--S-------------------SS--SSSSSSSSSS---------------------S-----------
--------------------------SS----S------------S------------S---------S--S--------
-----------------------------------------------------------S--S-----------------
--------------------------------------------------------------------------------
-------S----------------------------------------------------S--------------S----
---------------------------------S----------------------------------------------
-----------------------------------S---S----------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------S--------------S-------
-------------------------------------------------------------------------SSSSSSS
S-------------------S--S--------------------S-----------------------------------
-------------------------------------------------S------------------------------
--------------------------SS--------S--------------------------------S--------SS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
-----------SS---------------------------S-----------S---------------------------
-------------------------------------------------------------S--------S---------
--------------------------------------------------------------------------------
-------------------------------------------------------------S--S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
S--------------------------------S--------------------------------S-------------
--------------------------------------------------------------------------------
--------S------S-------S-----------------------------S--------------------------
--------------------S-------------------------------S----------SSSSS
>forward_233
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAACCAGCGTGTCGTTCG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1788
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AGCTTTCAGGGCGCAATTTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
