>input_sequence_78582
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----------------------------ATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGTGCCACCGGCGGTGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACGTGCCGGGGCTGGGCTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCC
GAGAACGCCGACACGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCCAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGA-------------------------------------
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>chr3D_1_TraesCS3D01G114700
AGCGCTCGTCGACCAAGAGCCAGCCATCTTCGTCCAGGAAGCACTCGCCGTCTAAGAACCCGCCTAAGGCCAGGCCGGCA
GAGGCCAGAAAGGCCAAGCCGGTGAGAGCTGGTAGCAGCAAGGGTGGCGAGAAGGTCGGGAAGAGCGGCAAGGCCAGGCC
GGAGGGCGGGAAGGGGGATGCTCTGAATAAGGTGGGAAGTAAGCTGAGCGTGGTTGGATTCAGAGGGCGCAGCACCGGGA
AATCGGCGCAGGCTTCATGA--TAATCGCTCCTGAGATATTTGATCCTGTAAACCTGTAAATATCAGTGACTTGGTTTTT
GCCATTTTTTGTGCTTTTTGGCTTACAATTTTGATAATCTTTTTTAAAAGAGAAAGGAACATTTGAGATCTTACCACGGC
ATCTGTAATAATAAAAAAATGTTTGTGCTTTTATTATTTGTACTT----GAAGAGTGTGGA--G--TTGTCTTGCCCAGA
TGCTAAATCTTTGT--------TACTACACATCTTTGTTATTTGGAGGTGACTGACATTTATCCCAGTTTGTTCCTCACC
ATGTTGCGGTGCTCCTAGTCCCCGAATTCGACACAAACCAG-------------CAGTGATCGCAGATATGCGCGGGAGG
ATTGGAGAAGTTTCTGGAGA------------TCCAAAAATAAAAGTGAAAGGAAAAGCGCAGAGCTTAAAAATATCTCT
G----CTCCTATCCGCTCCAGAAGCGAGACACTTGTCACGACAGGTC---------------------------------
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--------------------------------------------------ACAGACCTGGCCACTCATCAACATTTTCA-
---------TTTTCCTAA---------------------------------------------AGAAAGACCG-TTGATG
GAG------------CTCTGGAACTTTCCGCGGTGCCGCATCCGGCGGGTTCCACCACGTTTCAGAAGCTTCCGTCACCT
TCCAGAATCCAGACTCCCCGCC----T---------CCGGCCACCGATATAAACTCCCTCCTCCTC-CC-GTC----GCA
TCATCACCGAAGCATTCCACAAAATCAG--------CAAACAATCCAACGCA-GTCCAGCCGGAGGAGA--CCGATCGAT
CGAGCTCGGAGATCAGCAGCGAGCGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGTGCCACCGGCGGTGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACGTGCCGGGGCTGGGCTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCC
GAGAACGCCGACACGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCCAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------G----ATGGATGGGACAACCGAACCAG
AGAGAAGGTCCTTTGCCTGG-CGCCTGATCGGAGCTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGT
TTCCTGAGATGCGTGATGTGTC---TGTGATTTCTATCTCTGCTCGCATGGTGTCCGAGGGTGTTGTGTGGCTAGTTTTC
TCTTTCAGTGCGCAATTTCAATGAAATTTCGGAAATATCATCAATTTTGGTTC---------------------TTCCA-
------------------AAATATTTCAGTAATCTTGGTGGCGCACACAACTTCAAATAATTCTAAATCATCTTTTTGTT
TTTCTCAAAATATTTGTTTGGGTCCCAAAATCAAATATTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGT
CACTGGATTTCAATGGAAGTCAGTTAATTCGCCCATGTTTTTTTTTTGAGTTGTTGATTGTTTTT-AGATAGCTACGTGC
TTATTCCTTGAACGGTGTCTGTTTGTGGTGGTTTTTACGCTGAAATGAAAAACGTAATGCCCAGAATTTTGGATGTACAT
TTGCAAGATACAATTGAGCATTACGTTTATGTATACTTCCTCAATTTCAGCGTATCCCAAAATTCATCTG----------
TTTGACCAACTAGATGTGGGTTATATGTAACAAAAATTATACCATCGAATTCATATTCAAAAGAAGTTTTCAACGGTATA
A-TTTTTAACTC-CAAAAATACATATCATTGATCTAATATGGTCAAACTTAAATTTTGAAATCCGTTTAAGTCCAAAAAT
ACATATCATTGATCTAATATGGTAAGTTAAATCTTGAAATCCATGCACGTGTCTTATACATTGGAATAGAGGAAGTAACT
TTATAATAGAAAATGGAAGGCAAAATTTCAAAAATCATTAACGAAGAAAGAGTTGAATCAAAGTTACTAGTTTTTAAAAT
TCATTCTATACATATAAAAGATAAAGTAATTCCATATTGTAAGGTTGAGGTCGGATCAAGCATCATATTTCAAGGTTAGA
TTT
>chr3B_1
AGCGGTCGTCGACCAAGAGCCAGCCATCTTCGTCCAGGAAGCACTCACCGTCTAAGAACCCGCCGAAGGCCAGGCCGGCA
GAGGCCAGAAAGGCCAAGCCGGTGAGGGCTGGTAGCAGCAAGGGCGGCGAGAAGGTCGGGAAGAGCAGCAGAACCAGGCC
GGAAGGCGGGAAGGGGGATGCTCTGAATAAGGTGGGAAGTAAGTTGAGCGTGGTTGGATTCAGAGGGCGCAGCACCGCGA
AGTCGGCGCAGGCTTACCACGGTAATCGCTCCTGAGATATTTGATCCTGTAA-CCTGTAAATATCAGTGACTTTGTTTTC
ACCATTTTTTGTGCTTTTCGGCTTACAATTTTGATAATCTTTTTTAAAAGAGAAAGGAACAATTGAGATCTTACCACGGC
ATCTATAATAAAATAATTTTGTTTGTGCTTTTATTGTTTGTA--TACACGAACAGCGTGGAGCA--TTGTCTTGCCCAGA
TGCTAAATCCTTGT--------CACTGCACATCTTTGTTACT--------------------------------------
-----------CTCACAGCCCCTGAAATCGCCACAAACCAG-------------TAG-------------GCACCGGAGG
ATTGTAGAAGTTTCTGGAGAGCGGAT-ATCTTTCCAAAGGAAAGAGCGAAAGGAAAAGCACAGAGCTTAATAAATACTAT
CTCTACTCCTATCCGCTCCAGAAGCGAGACACTTGTCACGACAGCTTAGGGCATCTCCAGCCGCGCCCCAGGAAGACCTT
CCCAGACGTTTTTTTCGCGCCGGCGCTGAAAAAACGGCCCAGTCGCGCCCCAGGAGCCTGATTTTCGCCGGCTTGGGCCG
AAAACAGCGCCGGCGGACCCAGCCCGAACCCGGCGCGCTGGGGGGCGACCGGGGGCGCCGGGCGAACTGTTTTGGCGCGA
AAAAGCCGCGGGCCCCCCGCGTCAGCGACACGGCTCTCTTCTCGGCCCTTCGTCGTCCTCATCGCCTCGTTTCCCGCAGC
GAATCAATGCCAAAGCTGCCGCGCTGCCGCGCCGGTCAGCCTGCACCATTGATGCCTCATGGGCGGCGCAGTGAAGACCG
GACGACGCGCGTCCCTCGCCCTCCCTCGCCCCGCCACGCGTACACACGGTGACACGCGCGCCTTGGCCTATATATGAAGC
GCCCCGACGCACTCGGCGACTCACGCTCTCCCGCCGCCGTCGTTTCCTCCCTCTCCTCTCCTCTCTTTCGCCATCCCCAG
TTCACAGCCATGGCCGAGCGCTTCCCAGACGACGGCGCGGCGGCGAACGGCTTCGGCCGCCGCCATCTTCACGAAGACGA
GGCTCGCCTCCTTTACGAGGCCGAGTACCCGGTCCTGCCGGACATGCGGGTGCCCGGGACGTGGAGGATCAGCGCGGGCG
GCGTACCGGTGCCCCCGGTGCCGACCGACGCGGCACGGCGTGCGGAGATCGCACGCATCCGCTCGAACCTGCCGCGTGCG
GCGAGGTAGGCGCCACGGTACGCCCCCGACAGCCCGCTCTGGGAACCGTACTTCCGCCGCCGTCAGGCCGAGCAGCTCGA
GGCCACCAACGGCGTCGTGCCCTCCGGCAGGCTCAACGCCACCGGCCGGCGTCTGTGGTGGGGCGTGCCCGGGCGCACGT
TGGAGGCTGTCCTCGAGCACATCGAGGGCGGCAACACGCCACGCCTGGAGTACCCCGCTCCTCCTTCCTTCTCACGCCGC
CGGGGAAGCTCATGGACCCCGAGGCGCATGGAGACCGGAGGGTCCTCTTCCTCGTCCGGCGGCTCGCCCTGCCTCCGCCC
TGTCAAGCCGGAGCCCCAGGACACGCCGATCAGCGCGCGCACCCGCAGCTCCGGCGGCGCCAACGCCTCTCCACCAACCG
GCCGCTTCGTCCTCGCCGAGCCCAAGCCGGAGCCCGTCCTCCCCGCGGAGTACGAGGAGATAGCCCGGCGCGGCTTCTCC
GACGAGGACGCCATGCGGTGGGCGCGGGACGACTACCTCCGCGACGAGATGGTCCGGCAGCACCGGGCCCTGGAGGAGAT
CGCCGCCCGCAAGCGTGGGCGCGAGGACGAGCACGGCGTCGTGGTCCTCGACAGCGACGACGACGACGACGCCCCCGGAC
CGTCCAACCCGACGCGCCAACCGGGGGAGGAATGCAGTAGGGACGGCGGAGGCGGTGACGACGACGACGGCGGTGACTAC
ACGCGGTTCTACCGCCTCCTCGGCATGTAGAACCGCGTGGGCGGGCGGCGAGGGAGACGGCGGGGATAGCCCGCGTAGTT
TTTTTTTTGTAAAATATGTTTAAGTTTGAATGAACTCGCCGATGTTTGCGTTAAATTTGAGTCATTTTTGTGCCGTGTTT
GATTTTTTTGACTAACCGTGGGCGCCGCGACTGGGGGGCATCACGCCCCTAGTGCGCGGTTTAGCGCCGGTGCGTCCTCA
GGGGGCGGTTTTTTGCCTCTCCTGGAGGGCCAACGGCTGGAGATGCCCTTACACACCTGGCCCGCCAAACCAGCCATTCA
ACATCCATTTTTTCCTAA---------------------------------------------AGAAAGACCG-TTGATG
GAGTCCCCACGGGAGCTCTAGAACTTTCCGCGTTGCCGCATCCCGCGCGTACCACCACGTTTCAGAAGTTTCCGTCACCT
TCCAGAATCCAGACTCCCCGCC----T---------CCGGCCACCGATATAAACTCCCTCCGCCCC-CC-GTC----GCA
TCATCACCGAGGCATTCCACAAAATCAG--------CAAGCGATCCAACGCA-GTCCAATCGGAGGAGA--CCGATCGAT
CGAGCTCGGAGATCAGCAGCGAGCGAGAATGGAGGCCAGGATGTTCGGGCTGGAGACCCCGCTGATGGCGGCGCTGCAGC
ACCTGCTGGACATCCCGGACGGCGAGGCCGGCGGGGCCGGAAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACGTGCCGGGGCTCGCGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GAGAATGCTGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTGGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------G----ATGGATGGGACGACCGAACCAG
AGAGAAGGTCCTTTGCCTGCACGCCTGATCGAAGTTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGT
TTCCCATGATGCGTGATGTGTC---TGTTTTTTCTATCTCTGCTCGTGTGGTGTCCGAGAGTGTTGTGTGGCTAGTTTCC
GCTTTCAGTGCGCAATTTCAATGAAATTTCGGGAATATCATCAGTTTTGGTTC---------------------TTCCA-
------------------AAATACTTCAGTAATCTTGGTGGCGCATACAACTTCAAATAATTCTCTATCATCTGTTTGTT
TCT-TCAAAATATTGGTTTGGATCCCAAAATCAAATATTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGT
CACTGGATTTCAATGGAAGTCAGTTAATTCACCCATGA--TTTTTTTGAGTTGTTGATTGTTTTTGAGATAGCTACCCGC
TTATTCCTTGAAAGGTGCCTGTTCGGGGTGGTTTTTACTACGTGTAGAAT-----------CAGAATTTTGGATGTACAT
TTGCAAGATACAATTGAGCATTACGTTTATGTTCCTC-CCTCAATTTCAGCGTATCCCAAAATTCATCTTCGACTATATA
TTTGACCAACTAGATGTGGATTATATGTAACAAAAATTACACCACAGAATTCATATTCAAAAGAAGTTTT-AACGGTATA
TTTTTTTAAGTCACAAAAATACATATCATTGCTCTAATATTGTCAAAGTTAAATTTCGATATCCGTGCA-----------
-------------------------------------------------CGTCTTATACATTGGAATAGAGGAAGTAACT
TTACAATAGAAAATGGAAGG-CAAAATTTTAAAATCATTAACCAAAAAAGAGTTGAATCAAAGTTCATAATTTTCAAAAT
TCATCCTATACTAATAAAAGATAAAGTAATTCCATATTGTAAGGTTGAGGTCGGACCAAGCATCGTAGTTCAAGGTTAGA
TT-
>chr3A_1
AGCGGTCGTCGACCAAGAGCCAGCCATCTTCGTCCAGAAAGCACTCGCCGTCTAAGAACCCGCCGAAGGCCAGGCCGGCA
GAGGCCAGAAAGGCCAAGCCGGTGAGAGCTGGGAGCAGCAAGGGCGGCGAGAAGGCCGGGAAGAGCAGCAGAGCCAGGCC
GGAGGGTGGGAAGGGGGATGCTCTGAATAAGGTGGGAAGTAAGCTGAGCGTGGTTGGGTTCAGAGGGCGCAGCACCGGGA
AGTCGGCGCAGGCTTCATGA--TGGTCGAT-CTGAGATATTTGATCCTGTAA-CCTGTAAATATCAGTGACTTGGTTTCT
GCCATTTTTTGTGCTTTTCGGCTTACAATTTTGATAAACTTTTTTAAAAGAGAAAGAAACAATTGAGATCTTACCACGGC
ATCCGGAATAAAAAAAAATTGTTTGTGCTTTTATTATTTGTATATACACGAAGAGTGTGGA--GCATTGTCTTGCC----
--CTAAATCTTTGT--------TACTACACATCTTCGTTATTTTGAGGTGACTGACATTTATCCGAGTTTGTTCCTGACC
ATGTTGCGATGCTCCTAGTCCCTGAATTCGACACAAACCAG-------------CAGTGATCGCAGATATGCACGGGAGG
ATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAAAATAAAAGTGAAAGGAAAA----------------TGTCTCT
G----C--------------------------------------------------------------------------
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------------TCCTAA---------------------------------------------AGAAAGACCG-TGAT--
-----------GGAGCTCTGGAACTTTCCGCGTCGCCGCATCCCGCGCGTTCCACCAAGTTTCAGAAGCTTCCGTCACCT
TCCAGAATCCGGACTCCCCGCCCCACGTCAT----------CACCGATATAAACTCCCTCCTCCTC-CC-GTCCGTCGCA
TCATCACCAAGGCATTCCACAAAAAAAAAAAATCAGCAGACAATCCAACGCA-GTCCAATCCGAGGAGA--CCGACCGAT
CGAGCTCGGAGGTCAGCAGCGAGCGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGGCGGCGCTGCAGC
ACCTGCTGGACATTCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGCCGGCGAGAAGCAGGGCCCGACGCCGACGCGT
GCCTACGTCCGAGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGGC
GGAGGGAGGAGGAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GACAACGCCGACATGGAGAAGGTCTCCGCCGTTTGCCGCGACGGCGTGCTCACCGTCTCCGTGCAGAAGCTGCCGCCGCC
AGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------GATGCATGGATGGGACGACCGAACCAG
AGAGA-GGTCCTTTGCCTGCACGCCGGATCGAAGCTGCCGAGTGGGTAGTGAACTAGTGATCGATGCTTAGGGAGTGAGT
TTCCTGAGATGCGTGATGTGTCTTGTGTGTTTTCTATCTCTGCTCGTATGGTGTTCGAGAGTGTTGTGTGACTAGTTTTC
GCTTTCAGTGCACAATTTCAATGAAATTTCTGAAATATCATCAACTTTGTTTCAAACTTACCAGCTCAAAATAAGTGACT
CAAGTTTGTACTAACTTGAAGTGTCTCTTTAATCTTGGGGGTGCACACAACTTCAAATAATTCTAAATCATCTTTTTGTT
TTT-TCAAAATATTTGTTTGGATCCCAAAATCAAATTTGAGTGGACA--TAAGTCCCCTGTCTGAAATGAAAAACAGAGC
CACTGGATTTCAATGGAAGTCAGTTAATTCGCCCATG-------------------------------------------
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>chr3D_454
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-----------------------------------------------------------GA--A--TTATCTTGCCCAGA
TGCTAAATTCTTTGTTAACGAGTACTACACATCTTTGTTATTTCGAGGTGACTGACATTTATCCCAGTTTGTTCCTCACC
ACCTTGCAATGCTCCTAGTCTCTGAATTCGACAGAAACCAGCACTGGTCGCAGATAT-------------GCACGGGAGG
ATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAAAATAAAAGTTAACGGAAAA----------------TATCTCT
G----C--------------------------------------------------------------------------
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------------TCCTAAGAAGCGAGACCAAACCAGCCACTCAACATTTTCATTTGTTCCTAAAGAAAGACCGTTGAT--
-----------GGAGCTCTAGAACTTTCCACGTTGCCGCATCCCACGGGTTCCACCAAGTTTCAGAAGTTTCCGTCACCT
TCTAGA---------------C----T---------CCGGCCACCGATATAAACTCCCTCCTCCTC-CC-GTC----GCA
TCATCACCAACGCAGTCCACAAAAA----AAATCAGCAAACAATCCAACGCA-GTCCAATCCGAGGAGA--CCGACCGAT
CGAGCTCGGAGATCAGCAGCGACCGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACATCCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCTCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACGTGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCG
GAGAACGCCGACACGGAGAAGATCTCCGCGGTGTGCCGCGACGGGGTGCTCACCGTGTCCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGACTCTGAGAG----ATGGATGGGACGACGGAGCCAG
AGAGA-GGTCCTTTGCTTGCACGCCTGATCGAAGCTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGT
TTCCTGAGATGCGTGATGTG---TGTGTGTTTTCTATCTCTGCTCGTATGGTGTCCGAGAGTGTTGTGTGACTAGTTTAA
GCTTTCAGGGCGCAATTTCAATGAAATTTCTGAAATATCATTAACTTTGGTTCATACTGAAATAATTGCCTTTCTTCCA-
------------------AAATATCTCAGTAATCTTGGTGGCAGACACAACTTCAAATAATTCTAAATCATTTTTTTGTT
TTTA--AAAATATTTGTTTGGATCCCAAAATCAAATTTTAGTGGACATTTAAGTCCCCTGGCTGAAATGAAAAACAGAGT
CACTGGATTTCAGTGGAAGTCGGTTAATTCGCCCATGGTTGAAAGG----------------------------------
-------------------TGTTTGTGGTGGTTTTTACTAGGTATATAAT-----------CAGAATTTTGGATGTACAT
TTGCAAGATACA--------------------------------TTTC--------------------------------
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-------------------------------------------------------------------------AGCAACT
TTATAATACAAAATGGAAGG-AAATTTTTTAAAATCATTAACCAAAAAAGAGTTGAATCAACGTTAATAGTTTTCAAAAT
TCATTCTATACTTATAAAAGATAAAGTAATTCCATATTGTAAGG-CGAGGTCGGACCAAGCATCA---------------
---
>chr3B_796
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---------------------------------TGCCGCACAGCGCAAGTTCCACCACGTTTCAGAAGTTTCCATCACCT
TCCAGA---------------CAGTCT---------CCGGCGACCTATATAAACTCCTTCCTCCTC-CC-GTC----GCA
TCACAACCAAAGCATCCCACAAAATA------TCAACAAGCAGTCCAACGC----------CGAGGAGA--TCGATCAGC
GAGC-------------------TGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCGGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGGGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTCGGGTCCGGCGACATCCAAGTGCAGGTGGAGGATGAGCGGGTGCTGGTGATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCGAGAAGCTGCCGCCGCC
GGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr7B_796
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---------------------------------TGCCGCACCGCGCTCGTTCCACCACATTTCAGAAGTTTCCATCACCT
TCCAGA---------------C----TC-CCCGCCTACGGCGACCTATATAATCTCCTTCCCCCTC-CC-GTC----GCA
TCACAACCAAAGCATTCCACAAAATCAAGAAGCAGACAAGCAGTCCAACGC----------CGAGGAGA--TCAATCACA
--------------ATCACCGAGTGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGCAGTGCCGGCGGTGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGGGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGGACGCGTACGCCTTCGTGGT
GGACATGCCGGGGCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGCC
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCGAGAAGCTGCCGCCGCC
GGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr4D_796
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---------------------------------TGCCGCACACCGCTAGTTCCACCACATTTCAGAAGTTTCTATCACCT
TCCAGA---------------C----TC-CCCGCCTCCGGCCACCTATATAAACTCCTTCCTCCAC-CC-GTC----GCA
TCACACCCAAAGCATTCCACAAAATCAA--------CAAGCACTTCAACGC----------CGAGGAGA--TC-------
-------------GATCAGCGATCGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCGGACAGCGAGTCCGGCGGAGCCGGCAACGCCGGCGGCGAGAGGCAGGGCCCGACGC------GT
GCCTACGTCCGGGACGCGCGTGCCATGGCTGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGTCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGCGCTGGTGATCAGCGGCGAGCGGC
GCAGGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCA
GAGAACGCCGACATGGAGAAGATCTCCGCCGTTTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGAATGAGATG---------------------------
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>chr3B_811
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------------------------------------------------GTTCCACCACCTTTCAGAAGTTTCCATTACCT
TCCAGA---------------C-----CCCCCGCCTCTGGCGACCTACATAAACTCCCT-CTCCTCGCC-ATC----GCA
TCCCCACCAAAGCATTCCACAAAAT-------TCAACAAGCAATCCAACGCA-GTCCAACCTGAGGAGA--TCGATCGAG
CTCAA--------GATCCGCGAGCGAGAATGGCGGGCATGGTGTTCGGCTTGGAGAACCCAATGATGACGGCGCTGCAGC
ACCTGCTGGACATCCCAGATGGCGAAA---------CCGGTGCCCCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCTTTCGTGGT
GGACATGCCGGGGCTGGGTTCCGGCGACATCCAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCA
GGAGGGAGGAGAAGGAGGACACCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GAGAACGCCGACATGGAGAAGATCTCCGCCGCGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr3B_811
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------------------------------------------------GTTCCACCACCTTTCAGAAGTTTCCATTACCT
TCCAGA---------------C-----C-CCCGCCTCGGGCGACCTACATAAGCTCCCTCCTCCTCG-C-ATC----GCA
TCACCACCGAAAAATTCCACAAAAT-------TCAACAAACAATCCAAGGCAAGCCCAACCCGAGGAGA--TCGACCGAG
CTCGA--------GATCAGCGAGCCAGAATGGCGGGCATGGTGTTCGGCTTGGATGCCCCGATGATGACCGCGCTGCAGC
ACCTGCTGGACATCCCGGACGGCGAGGCCGGCGGGCACGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTGGGGTCCGGCGACATCCAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGTGAGCGCA
GGAGGGAGGAGAAGGAAGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GACAACGCCGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACAATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr3B_811
GTTCA---------------------------------------------------------------------------
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------------------------------------------------------CCACCTTTCAGAAGTTTCCATCACCT
TCCAGA---------------C----TC-CCCGCCTCCGGCGACCTACATAAACTCCCTCCTCCTCGCC-ATC----GCA
TCCCCACCAAAGCATTCCACAAAAT-------TCAACAAGCAATCCAACACA-GTCCAACCCGAGGAGA--TCGATCGAG
CTCGA--------CATCCGCGAGCGAGAATGGCGGGCATGGTGTTCGGCTTGGAGAACCCGATGATGACGGCGCTGCAGC
ACCTGCTGGACATCCCAGACGGCGAGT---------CCGGCCTCGCCGCCGGCGAGAAGCAGGGCCCGACGC------GT
GCCTACGTCCGGGACGCGCGCGCCATGGTGGCCACCCCCACCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTGGGTTCCAGCGACATCCAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGGA
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCC
GAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGATGGCGTGCTGACCGTCACCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAG----------------------------------------------
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>chr3B_811
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------------------------------------------------GTTCCACCACCTTTCAGAAGTTTCCATCACCG
TCCAGA---------------C-----C-CCCGCCTCCGGAGACCTACATAGACTTCCTCCTCCTCG-CCATC----GCA
TCCCCACC---AAATTCCACAAAAT-------TCAACAAGCAATCCCA---A-GTCCAACCCGAGGAGA--TCGATCGAG
CTCGA--------GATCAGCGAGGGACAATGGCGGGCATGGTGTTCGGCTTGGAGAACCCGATGATGACGGCGCTGCAGC
ACCTGCTGGACATCCCAGACGGCGAGGCCGGCAA------CACCGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCTTACGTCCGTGACGCGCGAGCCATGGCGGCAACCCCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTTGTGGT
GGACATGCCAGGTCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGCA
GGAGGGAGGAGAAGGAAGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCC
GAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTGACCGTCGACAAGCTGCCCCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr3A_811
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------------------------------------------------GTTCCACCACATTTCAGAAGTTTCCATCACCT
TCCAGA---------------C----TC-CCGGCCTCCGGCGACCTATATAAACTCCTTCCTCCTC-CC-GTC----GCA
TCACAACCAAAGCATCCCACAAAAAA------TCAACAACCAGTCCAACGC----------CGAGGAGA--TCAATCACA
--------------ATCAGCAAGCGACAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGC
ACCTGCTGGACGTCCCGGACGGCGAGTCCGGCGGAGCCGGCAATGCCGCCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGGGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGAGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGAAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGGC
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGATGATGCGCAAGTTCGTGCTGCCG
GAGAACGCCGACATGGAGAAGATCTCGGCCGCGTGCCGCGACGGCGTGCTCACCGTCACCGTGGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr4D_811
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------------------------------------------------GTTCGACCACCTTTCAGAAGTTTCCATCACCT
TCCGGA---------------C----TC-ACCGCGCCCGGCGACCTACATAAACGC---CCTCCTCGCC-ATC----GCA
TCGCCACCAAAGCATTCCACAAGAT-------TCAACGAGCGATCCAACGCAAGCCCAACCCGAGGAGAGACCGACCGAG
CTCGA--------GATCAGCGAGCGAGAATGGCGGGCATGGTGTTTGGCTTGGAGAACCCGATGATGACCGCCCTGCAGC
ACCTGCTGGACATCCCGGACGGGGAGGCTGGTGGAGCCGGTGCCGCCGGCGGCGAGAAGCAGGGCCCGACGC------GC
GCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGT
GGACATGCCGGGGCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGAGGGTGCTGGTGATCAGCGGCGAGCGGC
GGAGGGAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTACGTGCTGCCA
GAGAACGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCC
CGAGCCCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA-----------------------------------
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>chr4D_1788
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--------AATATTTGTTTGGATCCCAAAATCAAATTTTAGTGGACAT-TAAGTCCCCTGGCTGAAAGGAAAAACAGAGT
CACTGGATTTCAATGGAAGTCAGTTAATTCCCCCATGGTTGAAAGG----------------------------------
-------------------TGCTTGTGGTGGTTTTTACTAGGTATATAAT-----------CAGAATTTTGGATGTACAT
TTGCGAGATACA--------------------------------TTTCAGCGTATCCCAACATTCATCTTTGACTATATA
TTTGAATAACTAGATGTGAGTTATATGTAACAAAA-TTATACCATTGAATTCATATTCAAAAGAAGTTTTCAACGGTATA
A-TTTTGAAGTCATAAAAATACATATAATTGATCTCATATGTCCAAAGTTAAATTTTGAAATTCGTGCC-----------
-------------------------------------------------TGTCTTATACATTGGAATAGAGGAAGCAACT
TTATAATACAAAATGGAAGG-CAAAATTTTAAAATCATTAACCAAAAAAGAGTTGAATCAACGTTAATAGTTTTCAAAAT
TCATTCTATACTTATGAAAGATAAAGTAATTCCATATTGTAAGGTCGAGGTCGGACCAAGCAT-----------------
---
>SNPs
----S-----------------------------------------------------------S---------------
--------------------------------------------S---------------------S---SS--------
--------------------------------------------------------------------------------
-S--------------------------------------------------S---------------------------
------------------S------------------------------------------S------------------
-----------S------S-----------------------SS------------------------------------
-------------------------------------------S------------------------------------
--------S-------------S-------------------------------------------------S-------
-----------------------------------------------------------S----------S---------
--------------------------------------------S-S---------------------------------
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-----------------------------------------------------S--------SSS--SSSSSSSSS-SS-
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--------------------------------S----------S------------------------------------
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----------------------------------------------------------S---------------------
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--------------------------------------------S-----------------------------------
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------------------S-------------------------------------------------------------
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---------------------------------------------------------------------S----------
-------------------S-----------S------------------------------------------------
-----------------------------S----------------S------------S--------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-----------------S----------------------------------------------------------
-------------------------------------S--------------------------------------SS--
------------S----S--------------------SSS-S-SS---SSSSSSSSSSSS-------------------
--------------------------------SSSSSS-------------------------------S----------
---------------------------------------------S----------------------------------
---------S-------------------------------------S------------------SS-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
--------------------S-------SS------------S--S--------------------S-------S-----
-----------S-------------------------------------------S-----------S------------
--S
>forward_2553
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-----------------------------------------------------GACCTGGCCACTCATCAACA-------
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---
>reverse_3933
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------------CGGTGTCTGTTTGTGGTGGT------------------------------------------------
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---
