>input_sequence_78560
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---------------------------------------------------------------------ATGAGCCGAAT
GGGCAGCAACGGCGGCGGCAAGCTGGCAAGCTGGCTGTGGCGCGCGCCGCGGCGGGCTCTGGGCCGCGCGCGCGACCTCT
ACGTGCGGAGCCTCACCAGCTGCGCGGGCCAATTCCCGTCCGACGCCTCCTTCGGCTACCCGTCCTTCGCCGCCGCCCCT
GCGCCGTGCAGCAGGGCCGCCGGCTACCACAGCTTCTCCGCCTCCGCCTCCCCCTCATCCTCCTCGCGGTCCTACGACGG
CGACGGCGACCTGCGGGAGCTCATGCGCGCCGCGTCGGAGAGGCGGGCGGCCCCAGAGCGGCCGCCGGCGGTGCCCAGGA
GCCGGAGCGTGGCCATGGCGAAGATCGACGAGGACGGGCCGTGCGACTTTGGTCTCGCCGGCGCCGGCGTGCCGTTTGCC
AGGAGCCGGAGCTGCGCCGTCTCCGCCGGCCGGGCCAGTGGGCAGAGGGGGAGGGCCGCGCATGTGCCTGTGGCTTGA--
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>chr2A_1_TraesCS2A01G266800
TGATGGTTATGGACGTGCTTAGCATTTTAAAAAGAGAAAAATGACAATGTTACAAGAAAAATGTAGGTGCTTAGTAGTGA
ATTTGACTCATGTACAAGAAAAATGACAACTTGTACGGTTGTTCATCTCAAGAAATATAAATTTATCTTTTACTTCGGTT
TATTCGGTTAACCATTCGGTTTTTCGGTATATACCATAAAAACCAAAGTTCAAATCGGTATGAAAAGTTCATACCATACC
GAAACCAAAACCATAAAAACAAAAAAATCGGTTCGGTTCGGTTTATTTTCGGTATGGTTTTTCGGTTCGGTTTTAAAATG
CACAGAGTGAGCCGCAGGGCCCGGCCAAAGCACTCGAGGTTGAGGATGCCAAGTCCTTGTTTATCCAAAGGTGTGCATAC
CTTACTCCAATTTACTTTACACTTGTCTCCGGATAGCTCATCTTTTTGTGCCCACAGGAAGCGTCGTCTGACTTTGTCAA
TTTCTTTGAAGAATTTCTTAGGCATGCGAAGCACTGTCATAGCAAACGCTGAGATTGCAGTCAGCACGGCTCTGACGAGG
ACCCGTCGACCAGCAATGGACATGAACCTGCCCTTCCATCCGGCTAGCCTTGCTCTGATTCGATCCAGGACAAACTGGAG
GTGAACAAGTCATCACAACTTGGGACATGCACCTGT-AAGTGCCCGGTCATCACCGGCCACCCACCTATGGGCTCGTCTC
TCACAATGGTACAGAAGAAATAAA-TATAGTACTCGTATTA------TATTTTGTACAATTATTATCGCGTTGAATAGTA
GTACTACTAGTAGTACTCATAGAAAGCAAAATAAAGACCATATATCTGCAAATCCGATCAT------TTGCTCGCTCTCT
CC----CTCTCTATATATAAGCAACCCCCTGAATCGCGAGCTGCATCTCTTCTCTTCTCCCCG--TCCATCTCTTGTTCG
AATTAGAAGAAAGCTACTAGTATTAACAGTGTAATTAGCGAC---------GGGCTTAACCAGCGGTGCATGAGCCGAAT
GGGCAGCAACGGCGGCGGCAAGCTGGCAAGCTGGCTGTGGCGCGCGCCGCGGCGGGCTCTGGGCCGCGCGCGCGACCTCT
ACGTGCGGAGCCTCACCAGCTGCGCGGGCCAATTCCCGTCCGACGCCTCCTTCGGCTACCCGTCCTTCGCCGCCGCCCCT
GCGCCGTGCAGCAGGGCCGCCGGCTACCACAGCTTCTCCGCCTCCGCCTCCCCCTCATCCTCCTCGCGGTCCTACGACGG
CGACGGCGACCTGCGGGAGCTCATGCGCGCCGCGTCGGAGAGGCGGGCGGCCCCAGAGCGGCCGCCGGCGGTGCCCAGGA
GCCGGAGCGTGGCCATGGCGAAGATCGACGAGGACGGGCCGTGCGACTTTGGTCTCGCCGGCGCCGGCGTGCCGTTTGCC
AGGAGCCGGAGCTGCGCCGTCTCCGCCGGCCGGGCCAGTGGGCAGAGGGGGAGGGCCGCGCATGTGCCTGTGGCTTGATC
GATTGTTGCACTGGGAAGCTTGCCTCGTGTCCAGCCTTCCTCTATTTTCCCCCTTCGACTTCGAGTGTGCAGAAATCTGC
AGTCGGTGCTGTAAATA-------------------------------------GTTAATCCTTCTCGCACCATTCTGTT
CTGTATGGAAATTATTCTGGCGCATTCGCTTGTTGTAATCTCTTCCGCGCAGCAGTCGTCCCCTTTTCTTATCTATCCTT
ATCTTCGATCGTATTTAGTCCGTGTCACGGCGTATCCGGATCCGTGGGCTTCTGTCTGAGCTAGTTTGAGCTCAAATAGC
CTTAAAGTATCTAAATATAAACATTAGTTTGAGCTAGTTGCATCTAATTCATCTTAAAAAAACTATTCTACTCAAGAGAT
GTTAATTGGAGCTAATTCTTCTAGTGCATTTATTACAATCTAATCCTGTTATCCAAACATCTATTTGGCTAGAGTTAGTT
CAGGGTTAGTCATAAGTAAACCTGGGATGGTTTAGACTAAAACCATAATTTAAGTCAGTTTTCGTATTGGGTTGCTTTTA
GATTCGATGAAATGGGCTAAGTCCCTAAATCAATTTAGTTTGGTTTAGGCTCAACCTATTGTTGGACTGGTTTGGTTTGG
TCTGGACATAGACCGAACTGTGTCAACCGTTTCGACCCATGGATGATAATCAAATCGTGCAACCAAATCGACACGAGGAG
GTGAGGAGCGCCTCGACGGGCGACGACCGTCCCCCACTGCTACGATTAAGAATCTTCAGTTGTTGCTATCATTGTCGCTG
ACTGGCACTTGGTCGCTGCCCTCCCTTCCCTCTAACACCATCCGGCCGGTGGATGGCTGTCTTCCCCTTCCTTGGATGGA
GCTCGATCGCCTCCGCTACGGTTAGGGATCACTGGTTGCCGCTGCCGCCGTCGGCGGCTGGAGCTCCGTAGGTGAGACGC
CTATTGGGGAACGCAGTAATTTCAAAAAAAATCCTACGCACACGCAAGATCATGGTGATGCATAGCAACGAGAGG
>chr2D_649
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--------GTAATCACAACTTGGGACATGCACCTGTCAAGTGCCCGGTCATCACCAGCCACCCACCTATGGGCTCGTCTC
TCACAATGGTACAGAAGAAAAAAAATACCATACTCGTATTATACCCCTATTTTGTACAATTATTATCGCGTTGAATAGTA
CTCCGTAC--TAGTACTCATAGAAAGCAAAATAAAGACCATATTTCTGCAAATCAGATCAT------TCGCTCGCTCTCT
CCCCCTCTCTCTATATATAAGCACCCCCCTGAATCGCGAGCCGCATCTCTTCTCTTCTCCCCGCGTCCATCTCTGGTTCG
AATTAGAAGAAAGCTAGTAGTATTAACAGTGTAATTAGCGAGGGGGTAGAGGGGCTTAACCAGCGGCGCATGAGCCGAAT
GGGCAGCAACGGCGGCGGCAAGCTGGCAAGCTGGCTGTGGCACGCGCCGCGGCGGGCTCTGGGCCGCGCGCGCGACCTCT
ACGTGCGGAGCCTCACCAGCTGCGCGGGCCAATTCCCGTCCGACGCCTCCTTCGGCTACCCGTCCTTCGCCGCCGCGCCT
GCACCGTGCAGTAGGGCCGCCGGCTACCACAGCTTCTCC------GCCTCCCCCTCATCCTCCTCGCGGTCCTACGACGG
CGACGACGACCTGCGGGAGCTCATGCGCGCCGCGTCGGAGAGACGGGCGGCCCCGGAGCGGCCGCCGGCGGTGCCCAGGA
GCCGGAGCGTGGCCATGTTGAAGATCGACGAGGACGGCCCGTGCGACTTTGGTCTCGCCGGCGCCGGCGTGCCGTTTGCC
AGGAGCCGGAGCTGCGCCGTCTCCGCCGGCCGGGCCAGTGGGCAGAGGGGGAGGGCCGCGCATGTGCCTGTGGCTTGATC
GATTGTTGCACTGGGAAGCTTGCCTCGTGTCCAGCCTTCCTCTATTTTTCCCCTTCGACTTCGAGTG--CAGAAATCCGC
AATC-GTGCTGTAAATCTAGTTAAGAAAGCTACA-AGAGTATGCCTTGTGCTGTGTTAACCCTTCTCGCACCATTCTGTT
CTGTCTGGAAATTATTCTGGCGCATTCGCTTGTAGTAATCTCTTCCGCGCAGCAGTCG----------------------
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>chr2B_649
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--------GTAATCACAACTTGGGACGTGCACCTGTCAAGTGCCCGGTCATCAGCAGCCACCCACCTTTGGGCTCGTCTC
TCACGATGGCACAAAAGAAGAAAAATATAGTACTCGTATTA------TATTTTGTACAATTATTATCGCGTTGAATAGTA
CTCG---------------TAGTAAGCAAAACAAAGACCATATATCTGCAAATCCGATTATCTGCTCTCTCTCTCTCTCT
CTCTCTCTCTGTGTATATAAGCAACCCCCTGAATCGCGAGCCGCATCTCTTCTCTTCTCCCGG--TCCATCTCTTGTTCG
AATT------AAGCTAGTAGTATTACCGGTGTGATTAACAAAGGAGTGGAGGGGCTTAACAAGCGGGGCATGAGCCGTAT
GGGCAGCAACGGCGGTGGCAAGCTGGCGAGCTGGCTGTGGCGCGCGCCGCGGCGGGCTCTGGTCCGGGCGCGCGACCTCT
ACGTGCGGAGCCTCACCAGCTGCGCGGGCCAATTCCCATCCGACGCCTCCTTCGGCTACCCGTCCTTCGCCGCCGCGCCT
GCGCCGTGCAGCAGGGCCGCCGGCTACCACAGCTTCTCC------GCCTCCCCCTCATCCTCCTCGCGGTCCTACGGCGG
CGACGGCGACCTGCGGGAGCTTATGCGCGCCGCGTCGGAGAGGCGGGCGGCCCCGGAGCGCCCGCCGGCCGTGCCCAGGA
GCCGGAGCGTGGCCATGGCGAAGATCGACGAGGACGGGCCGTGCGAGTTTGGTCTCGCCGGCGACGGCGTGGCGTTTGCC
AGGAGCCGGAGCTGCGCCGTCTCCGCCGGCCGGGCCAGTGGGCAGAGGGGGAGGGCCGCCCATGTGCCTGTGTCTTGATC
GATTGTTGCACTGGGAAGCTTGCCTCGCGTCCAGCCTTCCTCTGTTTTTCCCCTTCGACTTCGAGTGTGCAGAAATCTGC
AATC-GTGCTGTAAATCTAGTTAAGAAAGCTTTGTAGAGTATGCCTTGTGCTCTGTTAATCCTTCTCGCACCATTCTGTT
CTGTCTGGAAATTATTCTGGCGCATTCGCTTGTAGTAATATCTTCCGCGCAGCAGTCG----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S--------------------------------------------S------------------------
--------------------S-----------------------------------------------------------
S-S-SSSSSS----------------------------------------------------------S-----------
-----------------------------------------S--------------------------------------
----------------S------------------------S------------------------S-------------
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----------------------------------------------------------------------------S---
---------------------------------------SSSSSS-----------------------------------
------------------------------------------------------S-------------------------
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------------------------------------------------S-------------------------------
-S--S-----------S---------------------------------------------------------------
----S----------------------------S------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_374
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----------------------------------CGAGGTTGAGGATGCCAAGT--------------------------
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>reverse_2308
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-------------------------------------------------------------------ATCATTGTCGCTG
ACTGGCA-------------------------------------------------------------------------
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