>input_sequence_78547
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-------------------------------------------------------------------CCG--CTCGCAGC
TCGAACCAAACAGAGATCGTCAG---CCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGC
GCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTCGCTCGGAGGGGCGGCGTG
AAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGT
CACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC
TCTACGGCTTCGGCGGCTAGGCGTCAATCTCCGTCCGCAACCCGTCGCCTCCTCGCCTTCAGCCAACAACTCCGCCCCGC
CGTGGCTGCAGCCTGCAGACGCGAGAAAACTGTCATATCTTTCGTTCAGTAGCTGTAGCCGGAACAAATGTTGCCTGTTC
AC------------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G297100
TACTAGTTAAATTGTGAGATTCGAAACTCATCTAGCGGCTGGCCTGACGTCTGCCACAACCAACAAGTATTTGCCAGAGG
ACGCGCCCCCGCTGCACTTTCGAAAACAAGGTATTGCATGGGGTATCGTACATATCGGTTTTTTCGGTGTATTCGGTTTT
TGGACACTGGAAACTGAACAGAAACCAAACACCGAACAGCCTTAAAATTTCCCACCGAACAAAAAATCGAATCACCGAAT
TAATAGATAAATCGGTTAATATGGTTCGGCTCGGTTCGGTTTTTCGGTTTTCGGTTCAAAAGTCCCCACCCCTATTCCCA
ATGCATTTTTTACCCGCTTCACAATTAGTCAAAAAAAAAAAATCTATATGCACACTTTTCACCGGGGGAGGGAGTATCAG
TGTGTAACTTCACACCCATTTCCTCTTCTCTAACTCTAGTATTTCTCGGAGATGACGATCGCTCGGAAGAAACAGAGTGC
CAATGATAATCCAATTCACTTCACTTGTTGGGAACCGGCACGCTCTCTCTACGATCAATCTACGTGAGCCCCTAGCCATT
GGTGCAGTTGACACCAACGACTTTTGA-AAATCCTTCACTGATTCAATCT--------TGAATTTTCGAAAACGTCA--G
ACAATCTGCTTGTAAGAGCCACTGTTA----GACTAGGCACACTCCGTTGCCGTTTCATTTTTCGCGCCGTCGCGCACGA
GCACCACAGAAGCGAAACTGAATTCGCACCAAGGAATC-----------GCACAGACAGCGCGGCAACGAGCGGAAAAGG
TTTCGAGCTGGCGCGTCACGGAACGAAAATTTTCAGGCGCGCCCCGCCAATCTACCGCGCCGAGACTCCCGCCACGTCAC
GGATCCGCGGCATCCATACCCGGATCGCGGTCTCGACCTTCGCAATTCTTTGG-CACGCATCGCCTTCCTCCCACCCCTT
TTAATCCCCTCCCCTCCTTCCCCCAAATCAGAACACCACAATCCACGACCGCTCCCTCGACCCGCATCCG--CTCGCAGC
TCGAACCAAACAGAGATCGTCAG---CCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGC
GCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTCGCTCGGAGGGGCGGCGTG
AAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGT
CACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC
TCTACGGCTTCGGCGGCTAGGCGTCAATCTCCGTCCGCAACCCGTCGCCTCCTCGCCTTCAGCCAACAACTCCGCCCCGC
CGTGGCTGCAGCCTGCAGACGCGAGAAAACTGTCATATCTTTCGTTCAGTAGCTGTAGCCGGAACAAATGTTGCCTGTTC
ACCCATCTGTCTATCGCAGAATGTCTCTAGTTACCTTGTAGCTCCATGAGCCCAGTCATGAGATCGAATATATATCGTCT
TCCCGTGCAAATGACGCGAGTTCGATGGGATGTTATGATTTACTGTCCT---GTTCCTGAATGAATTCCTACGGCTCTCT
GAATCTCCCCACATCTCTCTGATAACTGAATCTCCGGAGAGTCCGTTTCTCCGAAGAAGGCAGAGTTGCTAAACATCTCT
CTGATAACTGAATCTCCGGAGAGTCTGTTTCTCCGAAGAAGGCAGAGTTGCTAAACAGTAGCCGGGCTCAAATAAAGCAG
GCCGCAGGCCCATCTATCG-----AAGGCCCACGGCCCGTTCACGCAAGCGCCGCGGTTATTCATTCCGTCTCCGGCACG
TTCTCCCCTCTCATCCGTCTCCGACGAACTCGTTACGACACCCAACCAAACCGCAGCGCAACGCATCCGAAAAGGGCAAC
CAAAAAAGTTCGCTGCTCCTTTCTCCCACATCTCGCTTTCTGCATCCTCCTCTTCCCACCCTCGCTTTCTGCATCGCCGC
TTCCACCCCCCGAAAATCTCCCCTCAATCCCGACCACTCGATTTCCCCCTGAATCCTCCCCGCTGAACCAACCCGTTGAC
CCGATCTCTCCGTG-TTTTTTT---------TTCAATTCAATTCGTCCGCCGTCGATTCTCCTCTGTTCGTCGTCTCTGA
CGGC--------------CGCGGCGGCGGC----GGTTGACCTTGTTGCCGCTAGGGTTGGTTCGGGCGCGGGGACGATG
GCCAGCCACGGAGCTGCGCCGGCCGCCGGATCCGACGCCGCGCGCGTCGAGGTATGCCACGTGACCCGCCTATTGATTTC
TGTTTTAGTATTTT---CAGAGAAAGTGTATTACGGATGGTTTGGTTCCTGCCATAAGCTCCGTGCATTGGCATGTTCTT
ATCACGGCAGTTGTAGAGGATTCAGCCCTGTGATGATGTGCTGTGCAATTAATTGCGTGCATAAGACGTGCTCCAACTAA
G
>chr1A_396
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---------------------------------------------------------------------------ATCAG
GGTGTGACTTCACATCCATTTCCTTCTCTA-AACTCTAGTGTTTCTCGGAGATCATGATCGCTCGGAAGAAACAGAGCAC
CAATGATGATCCACTTTTTGTGAACCGTGGTTAGAGCCTGAATCCTCTGTATCTACTTGGAGCCCC--------------
-------TTGACACCAACGATTTTTATTAAATCCTTCACTGATCCAATCTAATCACCGTGATTTTCTGAAAATGTCATCG
ACAATCTGCTGCTAAGAGCCACTGCTA----GAC-----ACGCTCCGTTGCCGTTCCATTTTTCGAGCCGTCGCGCACGA
GCACCGCAG-AGCGAAACTGAATTCGCACCTAAGGAAACGCACAGACAGGCA--GACAGCGGGGCAACGCGCGG-AAAGG
TTTCGAGCTGGCGCCTCACGAATTTTCAGGC----GGCGCACCCCGCCAATCTACCGCGCCAAGCCTCCCGCCACGTCAC
GGATCCGCGGCATCCACACCCGGATCGCGGTCTCGACCTCCCCAATTCCGTGCTCACGCGTCGCCTTCCTCCCGCCCCTT
TTAATCCCCCTCCCCGCTCCCCCCAAATCGCAACACCGCAAGCCACCACCGCTCC-TCGACCTCCATCCGCTCTCTCAAC
TCGAACCAAGGCGAGTTCGTCAGCGACCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTGGGCAAGGGCGGCGCCAAGC
GCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCGCTCGGAGGGGCGGCGTG
AAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGT
CACCTACACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC
TCTACGGCTTCGGCGGATAGGCGCCCCCCTTCGT-----------------------------CAGCAACTCTGCCCCGC
TGTGGCCGCAGACGGGAGA-------AGTCTGCCATGTCTTATGTTCAGTAGCTGTAGCCGGAACAA-TGTCACCTGTTC
TCCCATCTGTCTATCGCAGAATCTCTCTAGTTACCTTGTAGCTCCATGAGCCCAGTCGTGTAATCGAATATAT--CGTCT
TACCGTGCAAATTCCGCGAGTTCGTCGAGATGTTATGATTTGTTTACTGTCCGTTCTTGATTGAGTTCCTACGCTTCTCT
GAATCTCCCCACAGCTCTGTGTTAACTGAATCTCTGGAGAGT-CGTTTCTCCGAAGAAGGCAGAGTCGCTAAC-------
--------------------------------------------------------AGCAGCCGGGCTCAAATAGACCAG
GCCACAGGCCCACCTATAGCTTCCAAGGCCCACGGCCCGTTCACGCAAGCGCCGCGGTTATTCATTCCGTCTCCGGCACG
TTCTCC--TCTGCTCCGTCTCCGACGAACTCGTTGCGACACCCAACCAAACCGCGACGCAACGCATCCAAAAAGGGCAAC
CAACAAAGTTCGCTGCTCCTTTCTCCCACATCTCGCTTTCCGCATCCTCCTCTCCCCACCTTCGCTTTCTGCATCCCCGC
TTCCGCCC-AAAAAAATCCCCCCTCAATCCCGCCCACTCGATTTCCCCCTGAATCCCCCCCGCCGAACCAACCCGTTGAC
CCGATCTCCCCGTGTTTTTTTT---------TTCAATTCAATTCGTCCGCCGCCGATTTTCCCCCGCTCGTCGTCGAACT
GAATCGCGCCGTCCGTGGCGCGGCGGCGGC----GGTTGACCCTTTCG-CGCTAG----GGTTCGGGCTCGGGGACGATG
GCCAGCCACGGAGCTGCGCCGGCCGCCGGATCCGACGCCGCGCGCGTCGAGGTATGCCACGTGACCCGCCTGTTGATTTC
TATTTTAGTATTTTTTTCAGAGAAAGTGTATTAGGGATGGTTTGGTTCCTGCCATAAGCCCCGTGCATTGGCTTGTTCTT
GTC-----------------------------------------------------------------------------
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>chr1D_560
TGGTGTCG------------------------------------------------------------------------
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------GTTGACACCAACGATTTCTGA-AAATCCTTCACTCACTCAATCTAATCGCCGTGATTTTTCGAAAATGCCATCG
ACAATCTGCTGCCAAGAGCCACTGTTAGACTGAC-----ACACTGCGTTGCCGTTTCATTTTTCGCGCCGCTGCGCACAT
GCACCACAG-AGCGAATCTGAATTCGCACCAATGAAAC-----------GCA--GGCAGCGCGGCAACGCGCGG-AAAGG
TTTCGAGCTGGCGCGTCACTGAACGAAAATTTTCAGGCGCACCCCGCCAATCTACCGCGCCGAGCCTCCCGCCACGTCAC
GGATCCGCGGCATCCACACCCGGATCGCGGCCTCGACCTCCCCAATTCCGTGG-CACGCATCGCCTTCCTCCCGCCCCTT
TTAATCCCCTTCCCCGCTTCCCCCAAGTCGCAACACCACAAGCCACCACCGCTCC-TCGACCTTCATCCGCTCTCTCAGC
TCGAACCAAGGCGAGTTCGTCGGCGACCATGTCTGGGCGCGGCAAGGGAGGCAAGGGTCTCGGCAAGGGCGGCGCCAAGC
GCCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCTCGGAGAGGCGGCGTG
AAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGT
CACCTACACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC
TCTACGGCTTCGGCGGCTAGGCGTCCACCTTCGTCCGCAGCTCGTCGCCGCCTCGTCGTCAGTCAACAACTCCGCCCCGC
TGTGGCCCCGGGCGCGAGG-------AAACTGCCATGTCTTATGTTCAGTAGCTGTAGCCGGAACAA-TGTCACCTGTTC
CCCCATTTGTCTATCGCAGAATCTCTCTAGTTACCTTGTAGCTCCATGAGCCCAGTTGTGAAATCGAATATAT--CGTCT
TCCCGTGCAAATGCCGTGAGCTCGTCGAGATGTTAGTATGA-TTTACAGTCCGTTCTTGATTGAATTCCTGCGGCTCTCT
GAATCTCCCCACAGCTCTCTGTTAACTGAATCTCTGGAGAGT-TGTTTCTCCGAAGAAGGCAGAGTTGCTTTTTTTTTTG
AGGGTTAT---------------------------------GCAGAGTTGCTAAT-AGTAGCTGGGCTCAAATAGAGCAG
GCTGCAGGCCCATCTAGCGGCCG--AGGCCCACGGCCCGTTCACGCAGGCGTCGCGGTTATTCATTCCGTCTCCGGCACG
TTCTCC--TCTCCTCCGTCTCCGACGAACTCGTTACGACACCCAGCCAAACCGCGACGCAACGCACCCGAAAAGGGCAAC
CAACAAAGTTCGCTGCTCCTTTCTCCCGCATCTCGCTTTCTGCGTCCTCCTCTTCCCACCCTCGCTTTCTGCATCGCCGC
TTCCGCCC-CAGAAATTATCCCCTGAATCCCGCCCGCTCGATTTCCCCCTGAATCCTCCCCGCCGAACCAACCCGTTGAC
CCGATCTCTCCGTGTTTTTTTTCCAATTCAATTCAATTCAATTCGTCCGCCGCCGATTCTCCTCTGTTCGTCGTCTCTGA
CGGCGCG------------GCGGCGGCGGCGGTTGGTTGACCTTGTCGCCGCTAG----GGTTCGGGCTCGGGGACGATG
GCCAGCCACGGGGCTGCACCGGCCGCTGGATCCGACTCCACGCGCGTCGAGGTATACCGCGTGACTCGCCTATTAATTTC
TATTTTAGTATG--TTTCAGAGAAA--GTATTAGGGATGGTTTGGTTCCTGCCATAAGCTCCGTGCATTGGCCTGTTCTT
ATC-----------------------------------------------------------------------------
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
S----S--------S---------SS---SS---------S------------S-S---------------------SS-
-------S-----S--SSSS-S-SSS--S-SS-SSSSSSSSSSS----S--SSSS-SSSSSS-SSSSSSSSSSSSSSSSS
SSSSSS--------------S----------------------------------------S----------S-------
----------SS----------------------SSSSS-----------------------------------------
---------S----------------------S---S---------------SS---------------S----S-----
----------------------------------------S-----------------------S---------------
----------------S----------------------S-S------SS-----------------------S------
----------S---SS-------------SS----------S----S--------S------SS-----------S----
---------SSS---S----------------------------------------------------------------
-----S--------------------------------------------------S-S---------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
-------------------------S-S--S--------S-S-------S-----S-S----S-----------------
S-----S----S-S-S---SSSSSSS------S---S----SS------------------------S---SS-------
S---------------------S----------------------------------S---S-----------SS-----
-------------S----------SS-S-------------SS-SS-SS-------S---S-------------------
-------------S-------S------------S-------S-----------------------------SSS-S-SS
SS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS------------------S-----
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------SS----S-----------------------------------------SS------------------------
---S----------------------------------------------------------------------------
----S---S-S---------------------S------------------------------S----------------
----------------------------------------------------S---------------------------
----------------------------------------------S--------SSSS---------S-----------
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-S-------------------------------S--------------------------------------S-------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_108
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--------CCGCTGCACTTTCGAAAACA----------------------------------------------------
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>reverse_1595
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--------------------------------------------------------------------------TCGTCT
TCCCGTGCAAATGA------------------------------------------------------------------
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