>input_sequence_78532
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--------------------------------------------------ATGGCGGCGATGATGGTGGCGGCGAGGCAG
GGGCGCGAGCTGCAGCGGTACAGCGCCAGCACGGGCGGCCGCATCGTCGTGGGCTGCATCCCGTACAGGGTGCGCGACGA
CAACGGCGAGGTGGAGGTGCTGGTCATCTGCTCCCGCAAGAAGGGCGCCAGCGCGGGCGTGCTGTTCCCCAAGGGCGGGT
GGGAGCTGGACGAGTCCATGGACGAGGCGGCGCGCCGCGAGGCCCTGGAGGAGGCCGGCGTGCGCGGCGAGACGGGGCAA
AGCCTCGGCCGCTGGTGCTACCAGAGCCGCAGCTACGAGGCCACCTACGAGGGGTACATGTTCCCGCTGCGCGTCACCGA
CGAGCTGGAGCGCTGGCCCGAGATGTCCGGCCGCGGCAGGACCTGGGTCACCGTGCAGGACGCCATGGACCGCTGCCCGC
ACCTCTGGATGCGCGAGGCGCTCCAGCGGTTCGCCGACCGCGTCGCCGACGCCGCCTTGTAG------------------
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>chr7D_1_TraesCS7D01G207000
ACTGCGCAAAATCCACAATAACATCTTTTTTTAGACAGAGTATCTTCCTAGTCCACCTTGTGAACGTCTTAGGTCTTTAA
GTATATTCAGTTAAAAAGTTTAATCAACAACCATGGACTCATAGCATTCCCATGTAATTTGATGCCCCTTTCTACAAACC
TTTTCATGGCAAGATATTTCTAGAAACCTTTTTCATGTCAAGGATCAGCTGAACATGAAAAGACCTGAAAGGTATGGAGG
CATAGTTTCAACTCTCAAGGCCTCTTTTCTAGGGCAATTCAGCTCATCATTGAACAACTCAACTTATATGACCAAACATG
AACACTACCTTCTCCTTCGGCTGAACACTCGCAACCAAAAAAAGCGACCCATGATCGTGTAAACGCGCATCATTTCCATG
CCTTCTAGAAAAAAAAAGACCCTGCCATAAATAGCTGAACGGCAAAAGTCAAATACAGTAGTACTACTCTAGATCAAACC
GGTGGGATCCCAAACAAGCAA-CTTTTAGCTGGGAGCTCGTACACATCCATCCACCGGAACCTCGAACCGCTGCCCAAAC
GAGGAGCATCACAGAAACAGAAGCCAGATAGATAGATAGATAGATAGATAGATATTCACACGCAAAAAACAGAGCCCATG
CACCGCGTCCAGGCGCCACCTGGCCGGGCGTATCCATCCAA--CCTGCCCGCCTTTTGTCCCCGAGCTGCCCCGCCTTTG
TCACGTTCCCTCACTCTGCAACGACGCTGCCAACCACAACCACCACCAGAG-AGAGG------GAGGCCGCGCGTGCAGA
TCCTATTAATAGCCCGGCATCCCCGCCCCCATCTGGCTCAAATCCATCCAGCTCCAGCTCCAGCTCCTCCTCCCACCGGC
AGATCCAAAGATAGCGCCACCGGGCCTCCATATTTCAGACAGAGCCCCTCTCCCTCCTCCTCCTCCCTCCCCGTGGAGCT
CCAAGAATCATCCGACGACAGCAGCGGCCAGGCCATTGATTGATCGTTGGATGGCGGCGATGATGGTGGCGGCGAGGCAG
GGGCGCGAGCTGCAGCGGTACAGCGCCAGCACGGGCGGCCGCATCGTCGTGGGCTGCATCCCGTACAGGGTGCGCGACGA
CAACGGCGAGGTGGAGGTGCTGGTCATCTGCTCCCGCAAGAAGGGCGCCAGCGCGGGCGTGCTGTTCCCCAAGGGCGGGT
GGGAGCTGGACGAGTCCATGGACGAGGCGGCGCGCCGCGAGGCCCTGGAGGAGGCCGGCGTGCGCGGCGAGACGGGGCAA
AGCCTCGGCCGCTGGTGCTACCAGAGCCGCAGCTACGAGGCCACCTACGAGGGGTACATGTTCCCGCTGCGCGTCACCGA
CGAGCTGGAGCGCTGGCCCGAGATGTCCGGCCGCGGCAGGACCTGGGTCACCGTGCAGGACGCCATGGACCGCTGCCCGC
ACCTCTGGATGCGCGAGGCGCTCCAGCGGTTCGCCGACCGCGTCGCCGACGCCGCCTTGTAGGCGCTTCTCCTCGATCGT
TCTTCTCGCCGGGCGTGCCTGCAAGTGCAAAGGTCTCCCCGCCCTACGGTTTGTGCCGGCTGGGCTGGGCT-----CGGC
CGCGCGGCGCTGTGGCACTAGCGGTCAGGTCACAGGAACCAGAGCATTGTACTGTGACT---------------CCTGTA
CATTC-TTTGCTTGGGATTCGACCGGGCATGTAA-TCTCACCCACTTCGCCTAATGTTTTGAGATCATAATATAGGGAC-
TGCTAGCCAAGAACCATAACTCGGTTTATTGGAGTCAGAATGACCCATTTTTTCTCTCCATCAAACTGACTTGAGTCAAA
TACATTTAAATTTTTCATAATTACA-TTTTTGCATGTTTACATTGCAGTACATTTTAATACTTTTGAAACAATCAAACAG
GGGGAGCCGTCTACCTTATGCTCCGGCTTAAATCGGCAAGATAAAAAAGAAGCATGTCGGAGATGGTTACAAACGTCGGT
TGATCGACATTAGAGCATCTCCGGCCGCGCCCCCAACAGTCCCCCGGGGCGCCGACCCCCCCCCCCTCGCACCCCCAAGA
CACCGAAATCCGCCGGCTCGGCCCGTTTTTGGGCCCGGCGATCGCAGGCCGAACCCAGCGCACTGAGGGGCGCAAGGGGC
TCCGGCGCAAGGGGAAAACACGCTTGGGCAACACCGTCATGAGAAAAGTCAAGCCAATCGTCCAGATTCGCCCCCACCCC
CCGCGCGCTCGGCCACCACCTTGCCGATCCCGGCACCGCCCACCGCCCAGCACCGCTAGATCGGCCATTCCCCGCCGGAA
AAGAGAGAAGGTTTTGCCACGGCAGCCTCTCCACCACCGTCCGAGCGAGTTTTCCGCCGCTCCGGGCGCGCAGGGCGGTA
TACTGGCGGGTGTGCGCCCACCACGCCCGCCAGGTGTTCGGCGTTTTGTCTGCTCGGCGATGGACTCGGATGACGAGAAG
GCGCTCGCGGTGCTGCTGTAGGAGGAAGCCGATGGCGACGTCAAGG
>chr7A_374
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-----------------------------------------------------ATCGTGTAAACGCACGTCATTTCCATG
GCTTCTAGAAAAA-AAAGGCACTGCCATAAATAGTTGAACGGCCAAAGTCAAA--------TACTACTCTAGATCAAACC
GGTGGGAGCCCAAACAAGCAAACTTTTAGCTGGAAGCTCGTACACATCCA-CCACCAGAACCTCGAACCGCTGCCCAAAC
GAGGAGCATCACAGGAACAGAAGCCAGATAGATAGATAG-TAGATAGATAGATATTCACACGCAACG--CAGCGCCCATG
CACCGCGTCCAGGCGCCACCTGGCCGGGCGTATCCATCCTCCTCCTGCCCGCCTTTTGTCCCCGAGCTGCCCCGCCTTTG
TCACGTTCCCTCACTCGGCAACGACGCTGCCAACCACAACCACCACCGGAGAGGCCCACCGGAGAGGCCGCGCGTGCAGA
TCCTATTAATAGCCCGGCATCCCCGCCCCCATCTGGCTCAAATCCATCCAGCTCCAGCTCC------TCCTCCCACCGGC
AGATCCAAAGATAGCGCCACCGGGCCTCCATATTTCAGACAGAGCCCCTCTCCCTCCTCCTCCTCCCTCCCCGTGGAGCT
CCAAGAATCATCCGACGACAGCACCGGGCGGGTC----ATTGATCGTTGGATGGCGGCGATGATGGTGGCGGCGAGGCAG
GGGCGCGAGCTGCAGCGGTACAGCGCCAGCACGGGCGGCCGCATCGTCGTGGGCTGCATCCCCTACCGGGTGCGCGACGA
CAACGGCGAGGTGGAGGTGCTGGTCATCTGCTCGCGCAAGAAGGGCGCCAGCGCGGGCGTGCTGTTCCCCAAGGGCGGGT
GGGAGCTGGACGAGTCCATGGACGAGGCGGCGCGCCGCGAGGCCCTGGAGGAGGCCGGCGTGCGCGGCGAGACGGGGCCC
AGCCTCGGCCGCTGGTGCTACCAGAGCCGCCGCTACGAGGCCACCTACGAGGGGTACATGTTCCCGCTGCGCGTCACCGA
CGAGCTGGAGCGCTGGCCCGAGATGTCCGGCCGCGGCAGGACCTGGGTCACCGTGCAGGACGCCATGGACCGCTGCCCGC
ACCTCTGGATGCGCGAGGCGCTCCAGCGGTTCGCCGACCGCGTCGCCGACGCCGCCTTGTAGGCGCCTCTCATCGATCGT
TCTTCTCGCCGGGCGCGCCCGCGCGTGCTC------CCCCGCCCTACGGTTTGTGCCGGCTGGGTTGGGCT-----CGAC
CGCGCGGCGCTGTGGCACTAGCGGTCAGGTCACAGGAACCAGAGCATTGTACTGTGACT---------------CCTGTA
CATTCATTTGCTTGGGATTCGACCGGGCATGTAAATCTCACCCACTTCGCCTAATGTTTTGAGACCATAATATAGGGAC-
TGCTAGCCAAGAACCATAACTCGGTTTATTGGAGTCAGAATGACCGTTTTTTCCTCTCCATGAAACTGACTTGAGTCAAA
TACATTTAATTTTTTGATAATTACATTTGTTGCAAGCTTATATTGTAGTGCCTTGGAA---TTTTGAAACAATCAAA---
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>chr7B_601
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-----------------------------------------AGATAGATAGATATTCACACGCAACG--CAGAGCCCATG
CACCGCGTCCAGGCGCCACCTGGCCGGGCGTATCCATCCAA--CCTGCCCGCCTTTTGTCCTCGAGCTGCCCCGCCTTTG
TCACGTTCCCTCACTCTGCAACGACGCTGCCAACCACAACAACCTTCCGGCCAGAGC------CAGGCCGCGCGTGCATC
T-CTATTAATAGCCAGGCATCCCCGCCCCCATCTGGCTCAAATCCA------TCCAGCTCC------TCCTCCCACCGGC
AGATCCAAAGATAGCGCCACCGGGCCTCCATATTTCAGACAGAGCCCCTCTCCCTCATCCTCCTCCCTCCCCGTGGAGCT
CCAAGAATCATCCGACGACAGCAGCAGGCAGGTC----ATTGATTGTTGGATGGCGGCGATGATGGT---GGCGAGGCAG
GGGCGCGAGCTGCAGCGGTACAGCGCCAGCACGGGCGGCCGCATCGTCGTCGGCTGCATCCCCTACCGGGTGCGCGACGA
CAACGGCGAGGTGGAGGTGCTGGTCATATGCTCGCGGAAGAAGGGCGCCAGCGCGGGCGTGCTCTTCCCCAAGGGCGGGT
GGGAGCTGGACGAATCCATGGACGAGGCGGCGCGGCGCGAGGCCCTGGAGGAGGCCGGCGTGCGCGGCGAGACGGGGCCC
TCGCTGGGCCGCTGGTGCTACCAGAGCCGCAGCTACGAGGCCACCTACGAGGGGTACATGTTCCCGCTGCGCGTCACGGA
CGAGCTGGAGCGCTGGCCCGAGATGTCCGGCCGCGGCAGGACCTGGGTCACCGTGCAGGACGCCATGGACCGCTGCCCGC
ACCTCTGGATGCGCGAGGCGCTCCAGCGGTTCGCCGACCGCGTCGCCGACGCCGCCTTGTAGGCGATTCTCCTCGACCGT
CCTTCTCGCCGCGCGTGCCTGTAAGCTCTC------CCCCGCCCTACGGTTTGTGCCGGCTGGGCTGGGCTGGACTCGGC
CGCGCGGCGCTCTGGCGCTAGCGGTCAGGTCACACGAACCAGAGCGCTCTACTGTGACTCCTGTCGTGGCACGGCCTGTA
CATTG-TTTGCCTGGGATTCGACCGGGCATGTAAATCTCACCCACTTCGCCTAATGTTTTGAGATCATAATATAGGGAAA
TGCTAGCCAAGAACCATAACTCGGTTTATTGGAGTCAGAATGACCCATTTTTTCTCTCCATCAAACTGACTTGAGCCAAA
TACATTCAAATTTT------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-S-----------
S------------S----S-S-------------S--------S---------SSSSSSSS-------------------
-------S-------------------------S----------------S-----S-----------------------
--------------S------------------------S-------------------------SSSS-----------
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-----------------------------------------------S--------S-----------------------
-------------------------------------------------------------SSSSSS-------------
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---------------------------S----S-SSSS------------------------------------------
--------------------------------------------------------------S---S-------------
---------------------------------S----------------------------------------------
------------------------------------------------------------------------------SS
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----------------------------SSSSSSSS--------------------------------------------
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---------------S------------S-----S-S---S----S---S-S--SS--SSS----------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_347
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-------CCTTCTCCTTCGGCTGAACA-----------------------------------------------------
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>reverse_2168
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-------CAAGGGGAAAACACGCTTGG-----------------------------------------------------
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