>input_sequence_78520
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-------------------------------------------ATGGAGGTGAAGAAGAGGGCGGCCGCCATTGCCGCAC
TGTGCG---TGCTCCTCGTCATCTCAGTGCCGCCCCAGCAGCGGGCGGCCGCCAAGACCTTCTGCGAGTGCTACCAGCCC
TGCCACGACGGGTGCAGCCGCAGCGGA------TGGATCTGCAAAGTCGACTGTGTCGAGAAATGCAAGGAAGAAGGCTA
CATGGAGGAGAGCCGCGCCGTCTGCCTCTGGGT--CTGCAGCACCGACTCCCCCTGCGGCCCGTCGGCGGCGCCCACCGG
TAAGACGACGACGGCTCACCTTACTTGCATTGCATTTCTGC---TCCGTTTATGGATGAACTCTCCTGAGCATCGATGCA
G--TACATGGTCTCTCTTTTTTCTGTTGATGACACAAAGAAGAATCGTCTGTTCTAGCTGATGATCTTGTGCTCGCGTTG
GCCATTT-TGCAGAAGCAGAAGGCGCTGCGGATTGTAAGATCGAGTGCCACAAGAGGTGGGGCCAGGTTTAA--------
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>chr6D_1_TraesCS6D01G057400
CTACCAAACTCTAGAATTCGAGTAGTGAGGTCACTAGTTTAGGAAATCGTCGAAATATGTTGGCATCATGCAGCCTTTGT
TCGCTGGTCACTATTAAAAAGAGCAAAAGTATAACAAAAGATCACACCTGGGCAGTAGAGAATCTCAACTGATCATAGCA
GGTCCTTTGACAGACACAACATTTCAAATTATGAAACGTATAAGAATAGGCAATGTGAATAGAAATACATTTGTTTATTT
GTGAAGATTGTTGGTTCCACATGTGAACTGGCCATCGACTCCAACCTTTATAAATAGGAAAAATTTATCATCCTCACCAA
ACCATTTGTCAGCTACCTCGTCGTGACTTGTGTCGTTTCAAATTAGTGTTCCTGATGCCAGCTACATTTACCATCGCTAT
CTAACCAGTTGCCATCTATTTTGTACTGACATTGCATTAATGTCCTGGTGCCAGCTACATTTATCGTCCTCACTGAACCT
GTTGGTCATCAACCTCGTCATCACATGTGTCCTTTCAAATTAATGTCCTGGTGTCAGCTACATTTACCACCGTTTAAATT
AATATATGGTGCCAACTATATTTACCATCCACATCGAGCCAGTTGCCAACTAAACT---TCGTCCTGACATGTGTTGTTT
CGAAATGATGTTCTAGTGTGAGCAACATTTACCATCCCCACCGAACCAGTTGCCAACTACTCCCTAACGGTAAACGCTCT
TATATTTGTTTACGAAGGGAGTATCAAAATAACTACCC------------------------------------------
----------CAACTTTAGGTGTGCAGTTTTCAGTTGATGTGTCCTGGCCAGC--------------------------T
GTCAGCCGGGTCGAACATTTGACACAACGTGGCACCGGCGTGAAACACGTGTATCTTCTCACCACCCATGCATGCATACA
TCACGCACCCATATAAGGGACAAAGGCTGAACCCCAACGCTCGTCCGC-CACAACTTGGCACTCCACAGCAGCTCCCTTT
CCCTTCTCTTCTCATAGCTTGCACGTCCAAGGAAAGGA-GATCATGGAGGTGAAGAAGAGGGCGGCCGCCATTGCCGCAC
TGTGCG---TGCTCCTCGTCATCTCAGTGCCGCCCCAGCAGCGGGCGGCCGCCAAGACCTTCTGCGAGTGCTACCAGCCC
TGCCACGACGGGTGCAGCCGCAGCGGA------TGGATCTGCAAAGTCGACTGTGTCGAGAAATGCAAGGAAGAAGGCTA
CATGGAGGAGAGCCGCGCCGTCTGCCTCTGGGT--CTGCAGCACCGACTCCCCCTGCGGCCCGTCGGCGGCGCCCACCGG
TAAGACGACGACGGCTCACCTTACTTGCATTGCATTTCTGC---TCCGTTTATGGATGAACTCTCCTGAGCATCGATGCA
G--TACATGGTCTCTCTTTTTTCTGTTGATGACACAAAGAAGAATCGTCTGTTCTAGCTGATGATCTTGTGCTCGCGTTG
GCCATTT-TGCAGAAGCAGAAGGCGCTGCGGATTGTAAGATCGAGTGCCACAAGAGGTGGGGCCAGGTTTAACGCCCAGC
AGCAACCTGCAAAATAAGGAG-------------------------------ATGTTGAACGGCTGTGGTTGCCGAACCA
ATCAATAAAATGTG-TTCCG--CGCGTCGGCGCATCACTTGTGTGAAATTTTGCAAATCTCAAAGCGGCATGTTCATCTC
ATAAGAAGCTAACACGTAAAAGAACTCAAA----------------CATTAGCAATCTCATCCAAGCCTCCCTGAATCCT
GGTGAAAGCAAGCAACTCAACTTTGATTAGTCAGAAC-CAGATTA-AAAACAGACACGCTGAATGGGACAGGAGAAGAAA
TT-----TGATGCAGAATTCTTTCCGTCAGATACAACGTGGAACAGCAAGCAAAACAAAACAGTAAAAATATGAG-----
-----CACACACAGAATGCACGCAAGCAAAGATCAACTGAAAGGTACTGATTAATACAAGCAATTCTTATGTCTCCATGT
CAGTTGGCCAATTGACTGCGTTCGATAACAAGACGGGTTTGAGCAAAATAAGTGATTAATTCCTACGAATGCACTTCACA
TCTGACCACTGCAT-TCTACATAAGGGGTAAATTTCCGTGTGCATCGCATCA-AACGAGCCACTTCTGCATCTCAGCCAC
CGAAACATAACT--GATACCTGCAGGGAAATTATGACATCAGTCAAACCAATGTTCATACATGGAAAAGCCATCAAATTG
ATATCTGCGACTTTATATGACTCGAGCAATAAAAATTAGTTTCACTGTTGTGGAGATCGCCAAATTTGAATCATCACAGC
ATTATTAGACGAAACCAACATCACAAACAGAGGCTAGAATATCAGTTATTGGCTATATCTGATCCCAATAGAGGCTAAAC
TATCAGCGGGCATAGGAGGGGTTCATGGAGTAGGAAATAAGAAAAACCTCAAGGCA----TTCTTATAAATACCAAAAAA
GCTAGCTAATCACTAATGGATGAATCTAATCAAATTCATGCAGTTGAAGT---GAGTAAGGGATCATGCATCT--TATTA
ACGGATAGACGTCCTTCGGTCCAAAATAGATG
>chrUn_1
CTACGAAACTCTAGAATTCGAGTAGTTAGGTCACTAGTTTAGAAAATCGTAGAAATATATTGGCATCATGCAACCATTAT
TCGCTGGTCACTATTAAAATGAGCAAAAATATAACAAAAGATCACACCTGGGCAGTAGAGAATCTCAAGTGAGCATAGCA
GGTCCTTGGACAGACACAACGTTTCAAATTATGAAACATATAAGAATAGACAACGTGGATAGAAATACATTTGTTTATTT
GTGAAGATTGTTGGTCTCACATGTGAACTCGTCATCGACTCCAACCTTTATAAGTAGGAAAGATTTATCATCCTCACCAA
ACCATTTGTCAGCTACCTTGTCGTGACTTGTGCCGTTTCAAATTAGTG-TCCTGATGCCAGCTACATTTACCATCGCTAC
CTAACCAGTTGCCATCTATCTTGTCCTGACATTGCATTAATGTCCTGGTGCCAGCTACATTTATCGTCCCCACTGAACTT
GTTGATCATCAACCTCGTCCTCACAGGTATCATCCTCACAT---------------------------------------
--------GTGCCAACTATATTTACCATCCACATCGAGCCAGTTGCCAACTAAACCTCGTCGTCCTGACATGTGTTGTTT
CAAAATAATGTTCTAGTGTGAGCAACATTTACCATCCCCATCGAACCACTTGCCAACTAAATCTCGTCCTGACATGTGTT
--------------------GTTTCAAAATAATGTTCTAATGTGAGCTACATTTATCGTCCCCACCGAACGAGTTGCCAA
CTACTCCCCTCAACCTTACGTGTGCAGTTTTCAGTTGATTTGTCCTGGCCAGTTACATTTACCGTCCCACCAAACCAGTT
GTCAGCCGGGTCGAACATTTGACACAACGTGGTACCGGCATGAAACACGTGTATCTTCTCACTACCCATGCAT----ACA
TCACGCACCCATATAACGGACAAAGGCTGAACCCCAACACTCGTCCGC-CACAACTTCACACTCCACC------------
-------CTTCTCATAGCTTGCACGTCCAAGGAAAGGA-GATCATGGAGGTGAAGAAGAGGGCGGCCGCCATTGCCGCAC
TGTGCG---TGCTCCTCGTCATGTCAGTGCCGCCCCAGCAGCGGGCGGCCGCCGAGACCTTCTGCGAGTGCTACCAGCCC
TGCCACGACGGGTGCAGCCGCAGCGGA------TGGATCTGCAAAGTCGACTGCATCCAGAAATGCAAGGAAGAAGGCTA
CCCCGAGGAGAGCCGCGCCGCCTGCCTCTGGGT--CTGCAGCACCGACTCCGTCTGCGGCCCGTCGGCGGCGCCCACCGG
TAAGATGACGACGGGTCACCTTACTTGCATTGCATTTCTGC---TCCGTTTATGGATGAATTCTCCTCAACATCGATGCA
ATATACATGGTCTCTCCTTTTTCTGTT---GACACAAAGAAGAATCGTCTGTTCTAGCTGATGATCTTGTGCTCGCGTTG
GCCATTT-TGCAGATGCAGAAGGCGCTGCGGCTTGTAAGCACGAGTGCCACAGGAGGTGGGGCCTGGTTTAACGCCCAGC
AGCAACCTGCCAAATAAGGAGCTGAATGGCCAGTGGATCATGGGGTCGTATCATGTTGAACGGCTGTGATTGCCAAACAA
ATCAATAAAATGTGTTTCCG--CGCGTCCGCGCATCACTTGTGTGAAGTTTTGCAGATCTCAAAGTGGCATGTTTATATC
ATAACAGGTTA----------------AAA----------------CATTAGCAATCTCACACAAACCTTCCTGAATCCA
GC-GAAAGCAAGCAACTCAACATTGATCAGTCAGAAAACAGATAA-AAAACAAACACGCAAAATGGGACAGGAGCAGAAA
TT-----TGATGCCGAATCCTCTCCGTCAGATACAACGTGGAACAACAAGCAAAACAAAACAGTAAAAATATGA------
----ACACACACAGAATGCATGCAAGCAAAGATCAACTGGAAGGTACTGATTAATACAAGCAATTCTTATGTCTCCATGT
AAGTTGGCCAATTGACTGCGTTCGATAACAAGACGGGTTTGAGCAAAATAAGTGATTAGTTCCTACGAATCCACTTCACA
TCTGACCACTGCAT-TCTACATAAGGGGTAAATTTCCGTGTGCATCGCATCA-AACGAGCCACTTCTTCATCTCAGCCAC
CGAAACGTAACTCTGATACCTGCAGG--------------------------------ACATGGAAAAGCCATCAAATTG
ATATCTGCGACTTTGTATGACTCGAGCAATAAAAATTAGTTTCACTGTTGTGGAGATCGCCAAATTTGAATCATCACAAC
ATTATTAGACGAAACCAACATCACAAACAGAGGCTAGAATATCAGTTATTGGCTATATCTGATCCCAATAGAGGCTAAAA
TATC----------------------------------------------------------------------------
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>chr6A_795
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---------------------------------------------------------------------------CAGTT
GTCAGCCGGGTGGAACATTTGACACAACGTGGCACCGACGTGAAACATGTGTATCTTCTCACCACCCATACAT-------
-CACGCACCCATACAAGGGACAAGGGCTGAATCCCAACACTCATCCGTTCACAACTTCGCACTCCACAGCAGA--CCTTT
CTCCTCTCTTCCCATAGCTTGTGCGTCCAAAGGAAAGGGG---ATGGAGGCGAGGAAGAGGGCGGCCGCCATTGCCGCCC
TGTGCG---TGCTCCTCGTCATGTCAGTGCCGCCCCAGCAGCGGGCGGCCGCCAAGTCCTTCTGCGAGTGCTTCCAGCCC
TGCCACGACGGCTGCAGCCGCAGCGGA------TGGATCTGCAAAGTCGACTGCGTCGAGAAATGCTAGGACGTGGGCTA
CAGGGAGGAGAGCCTCGCCGCCTGCTGCTGGGTGTCTGCGGCACCGAC------------------------CCGACCGG
TAGGACGACGACGGATCACCTTACTTGCATTGCATTTTTGC---TCCGTTTATGGATGAACTCTCCCCAACATCGATGCA
A--TACATGGTCTCTCTTTTTTCTGTT---GACACAAAGAAGAATCCTCTGTTCTAGCTGATCATCTTGTGCTCGCGTTG
GCCATTG-TGCAGATGCAGAAGGCGTTGCGGATTGTAAAGTTGAGTGCTTCAAGAGGTGGGGCCATGTTTAACGCCA---
AGCAACCTGCAAAATAAGGAG-------------------------------ATGTTGAACGGCTGTGATTGCCGAACCA
ATCAATAAAATGTG-TTCTG--CGCGTCGGCGCATCACTTGTGTGAAATTTTGCAAATCTCAAAGTGGCATGTTCACTTC
ATAAGTGGTTAACACATAAAAGAACTCAAA----------------CATTAGCAATCTCATCCAAGCCTCCCTGAATCCT
GGTGAAAGCAAGCAACTCAACTTTGATTAGTCAGAAC-CAGAT-A-AAAACAAACACACAAAGTGGGACATAAGCAGAAA
TT-----TGACGCGGGATTCTCCCCGCCAGATACAACATGGAAAATCAATCACAAGAAACTGTGA-------------AA
ATACGAACACACGGAATGCAAGCAAGC-AAGATCAACTCAAAGGTACTGTTTAGTACAAGCAAATCTGATGGCTTCATGT
CAGTTGGGCAATGGACTGCGTTCGATAACAAGACGGGTTTGAGCAAAATAAGTGATTCATTCCTACGACTTCACTTCACA
GCTGATCACTGCATCCCTACATAAAGGGTAAATTTCCGCGCGCATCCCATCA-AACAAGCCACTCCTACATCTCAGCCAC
CGAAACGTAACTCTCATACCTGCAGGGCAATTATGACATCAGTCAAACCAATTTTCATACACGGAAAAGCCATCAAATTT
ATATCTGCGACTCTGTATGACTCAAGCAATAAACATTAGCTTCACCATTGTGCAGATCGCCAAAGTTGAATCATCACAGC
ATTATTAGACAAAACCAATATCACAAACAGAGGCTAAAATATCAGTTATTGGCTATATCTGGTCCTAATAGAGGCTAAAA
TATCAGTGGGCATACAAGGGGTTCATGGAGTAGGAAATAAGAAAAACCTCACAGGCATTCTTCTTATAAATGCCAAAAAA
GCTAGCTAGTCACTAGTGGATGAATCTAATCAAATTCATGCAGTAGAAGTGTCGAGTAAGGGATCATGCATCTCTTATTG
ACGAATAGACGTCCTTCGGTCCAAAATAGATG
>chr6D_939
ACTCCC--------------------------------------------------------------------------
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-----------------------------------------------------------------ACATCAGTTCCCTTC
CTCTTCTCTTGTCATAGCTTGGGCGAGGAAGGAGATGA-G---ATGGAGGTGAAGAAGAGGGCGGCCGCCATTGCCACGC
TGTGCATCATGCTCCTCATCATGTCAGTGCCATCCAAGCAACAGGTGGACGCCATGTTCTTCTGCAACTGTTACCAGCAG
TGCCACCACGGGTGCAGGCACAGCGTCCCTTGGTGGCTCTGCAACGTCGACTGCGCCGGCAACTGT---GACGGTGTTGA
CAAGAAGGACGCCCTCGCCGCATGCATCATGGT--CTGCAGCACGGACTCCATCTGTGACCCGTCGGT-GCACCAACGTG
TAAGACCA--ACAGAACAGCTTACTTGCATTCCATTTGCCCCGTTCCGTTTATAGTTGAATTCTCCTGAACATCGATGCA
A--TATATG--CTCTCTTTTTTCTATT---GATACAAAGAAGAATCACCACCTGGT-CTGAGGATCTTGTGCTCGTCTTG
GCCATTTTTGCAGATACACATGGTGTTGCGGATTGTATAGCTGAGTGCAAGAAGAGGTGGGGCAACAATTAATGCCA---
AGTAACCTTCAAAATAAAGAGTTGAA------------------------------------------------------
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>chrUn_1520
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-------------------AG-------------------------------ATGTTGGACGGCTGTGATTGCCGAACCA
ATCGTTAAAATGTG-TTCCGCCCGCGTCGGCGCATCACTTGTGTGAAATTTTGCGGATCTCAAAGCGGCATGTTCATTTC
ATAAGAGGCTA----------------ACACATAAAAGAACTCAACCATTAGCAATCTCATCCAAGCCTCCCTGAATCCT
GGTGAAAGCAAGCAACTCAACTTTGATTAGTCAGACC-CAGAT-A-AAAAGAAACACACAAAATGGGACATAAGCAGAAA
TT-----TGACGCGGAATTCTCCCCGCCAGATGCAACATGGAAAATCAATCACAAGAAACTGTGA-------------AA
ATACGAACACACGGAGTGCAAGCAAGC-AAGATCAACTGAAAGGTACTGATTAATACAAGCAAATCTCATGTCTTCATGT
CAGTTGGCCAATGGACTGCGTTCGATAATAAGACGGGTTTGAGCAAAATAAGTGATTAATTCCTACAAGTCCACTTCACA
GCTGACCACTGCAT-CCTACATAAAGGGTAAATTTCTGTGTGCATCGCATCAAAACAAGCCACTTCTGCATCTCAGCCAC
CAAAACGTAACTCCGGTGCCTGCAGGGCAATTATGACATCAGTCAAACAAATTTTCATACTTGGAAAAGCCATCAAACTT
ATATCTGCGACTTTGTATGACTCAAGCAATTAACATTAGT--------------------CAAAGTTGAATCATGACAGC
ATTATTAAACGAAACCAACATCACAAACAGAGGCTAGAATATCAGTTATTGGGTTTAGCTGATACTAATAGAGGTCATAA
TATCAGTGGGCATACGAGGGGTTCATGCAGTAGGAAATCAGAAACATCTCACAGGCATTCTTATTAACAATGCACAAAAA
GCTAGCTAGTCACTA-TGGATGAACCTAATCAAATTCATGCAGTAGAAGTGTCGAGTAAGGGATCATGCATCTCTTATTG
ACAGATAGACTTCCTTCGGTCCAAAATAGATG
>chrUn_1559
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---------ATGTGTTTCCG--CGCGTCGGCGCATCACTTGTGTTAAGTTTTGCAAATCTCAAAGTGGCATGTTTATATC
ATAACAGGTTA----------------AAA----------------CATTAGCAATCTCACAGAAACCTTCCTGAATCCA
GC-GAAAGCAAGCAACTCAACATTGATCAGTCAGAAC-CAGAT-ACAAAACAAACACGCAAAATGGGACAGGAGCAGAAA
TTAAATTTGATGCGGAATTCTCTCCGTCAGAGACAACATGGAACAGCAAGCAAAACAAAACAATAAAAATATGCACACAC
ACACACACACACAGAATGCATGCAAACAAAGATCAACTGAAAGGTACTGATTAATACAAGCAATTCTTATGTCTCCATGT
CAGTTGGTCAATTGACTGTGTTTGATAACAAGACGGGTTTGAGCAAA-TAAGTGATTAATTCCTACGAGTCCACTTCACA
GCTGACCACTGCAT-CCTACATAAAGG-TAAATTTCCGTGTGCATCGCATCAAA-CGAGCCACTTCTGCATCTCAGCCAC
CAAAACGTAACTCTGATACCTGCAGG--------------------------------ACATGGAAAAGCCATCAAATTG
ATATCTGCGACTTTGTATGACTCGAGCAATAAAAATTAGTTTCACTGTTGTGGAG-------------------------
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>SNPs
--------------------------S---------------S-------S-------S-------------S--S--S-
-------------------S--------S---------------------------------------S---S-------
-------S------------S----------------S-----------S---S---S----------------------
---------------SS------------S-S---------------------S-------S------------------
------------------S-------------S---------------S------------------------------S
-------------------S----S--------------------------------------------S--------S-
----S--------------S-----S--S--S-SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----------------------------------------------S------------------------
-S----S---------------------------------S-------S----------SSS-SSSS-SSS-S-S-SSS-
SSSSSSSSSSSSSSSSSSSS--S---------SSSS-S------------------------------------------
--------------S---S--------------------S------------S---------------------------
-------------------------------------------------------------------------SSSS---
--------------------------------------S------------------S--------------S-------
-S------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----------------------------------------------------S--------------------------
--S-----------------S------------------------------SS---------------------------
--------------S------------------------------------------------------S----------
S--------------------------SSS--------------------------------------------------
--------------S------------------------S----------------------------------------
--------------------------------------------------------------------S-----------
-----------------------------------------------------------------------------S--
------S--------S----------------------------------------------------------------
-------------------------------------------S--------S------SS-------------S-----
-------------S-------S----------------------------------------------------S-----
--------------------S-----------------------------------------------------------
----------------------------------------------------------------------S---------
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------S--------------------S------------------------S---------------------------
--------------S-----------------------------------------------------------------
-------------------------------------------------------------------------------S
------S-------S------------------------------------SS-SS---------------S--------
--------S------S----------------------------S----------------------------------S
--------------------------------
>forward_704
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--------------------------------------------ACCAGTTGCCAACTACTCCC----------------
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>reverse_2480
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-------------------------------------------------------------------------------C
TATCAGCGGGCATAGGAGG-------------------------------------------------------------
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