>input_sequence_78516
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-------------------ATGGCATCCACCTCGCCGGAACCCGCAGCGACCGAGACCGGCGACTCTGTCAAAATCCGCC
GCCTAGAGATCGCCGACCGCGAGAGGGGCTTCCTATCCCTGCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCC
GAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGC
TCCGGAGCGGCGGATCCTCTCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACG
TGGAGGACGTTGTGGTCGACGCCGCCGCGCGCGGCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGATCGCG
AAGGAGGCCGGCTGCTACAAGGTCATCCTGGACTGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGA
GAAGGGGGTTCAGATGGCCGTGTACTTCTGA-------------------------------------------------
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>chr6B_1_TraesCS6B01G310000
ATGTTGCTTACCGGCATCGAAGACGATGACGGGGAAGGGGGG-CATGGCAGAGTGAAGGACGACCGGGCGACGGCCAAAT
GGAAGAGCAGCAACAGCTCCTACTGTTGGATCTGCCGGCACCGCTT-----------GCACAGATCTGAGTCACCGCTCG
CCGGTGGTGGTGGGGCTAGAGGAAGTGGTTGTCC-TAGAGGTAGTGGTGACCGAGTAAATGGGTGGGGGT-----GGTGA
GCCTAGATTTGGCATCGTGACGCCGCGCCCGATTTCCGCCTTCCGCCATCCCCACTCGCTTTTAGCCTGCCACCCCCTCC
CCCCGCGTGCGAGCTTGCGCCGCCCTCAGCCTGACTCGCTAGAAACTGCCGATTCGGTAACTTCTAGCGGGCCAGGCCGG
GGGCTGCTTTAAACTTCGTGCGGATGCGAGCCAGCCCACTATGTGCGCAACCAAACGCACATTTCATGTCTCAACTTGGG
CTGGTTGCGATTTCGTGGGCAACCAAATGCGCCCTAAGGTATGATTATTTGTTTCCCCCTACACAACTTCTCCTCCTACA
TTTGTTTTCATGACAGCCTCTCTCTTTCACCGGAGCCTCAACCCTCCATGCATTGTTGTTCCAGGTCCTTTTCTTCTTCC
TTTTGTGGTGGTTGTCGCCACGATGTTCAACCCTTACACACATCATTTGCTTCCC-CTCCCCCTCTATCCCTCTTCGCCT
TTCTCAATTGCCCTTCTCTTTTTTCTCGTTCGTGTCGTGTCTAAGTCATTGTCAGGCGAATGATTC--------------
----------CAACTAAGCTTGAACCGGGGGGACTTCTAAGCCTGCACGTGCTTTAATCGCACTTGTAGCACTGATAGCA
AATCGGCATGGCTTTGTTTGCACTTGTAACACTGATAGC--------------AAATCGGCATGGTCAATCGAGGGCGTT
GATGCGCCACTCAACGGCTCACGCATCGTGCAGCACAAGAAAAAAGAGGCG--TCACTTGCCGAAGCTACCCGCTTCAGT
CCCGAGCTCTCGGACCCAGATGGCATCCACCTCGCCGGAACCCGCAGCGACCGAGACCGGCGACTCTGTCAAAATCCGCC
GCCTAGAGATCGCCGACCGCGAGAGGGGCTTCCTATCCCTGCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCC
GAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGC
TCCGGAGCGGCGGATCCTCTCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACG
TGGAGGACGTTGTGGTCGACGCCGCCGCGCGCGGCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGATCGCG
AAGGAGGCCGGCTGCTACAAGGTCATCCTGGACTGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGA
GAAGGGGGTTCAGATGGCCGTGTACTTCTGA-------TCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTG
TCCCGTCGCATCTACAGTATCCCTTTGTCTGTGGCAATCTGTTATCATA---TCATTATTCTGAACTTGTCTGTGTTAGT
GACTGAGAATGCTATTTATG-AATCCCAACTTTCTGATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCATAAA-
-------CCGTGCTATATTGTCTTGGTTAAATAACAGCGATAATTCTGTCGCTAC--TATAATGTTCCAAATATCGGCCA
GTTAATCGGCATCTCGGTCAGTTAATTGCCACTCAGGTGGGTCACCGAATAGCCGATAGTAACTGATTTATCAGCCGATT
AACTGCTGATTCGCCTATTTATCCCTACTCAGCACCTGAACGATATGGTACCAGTTACCGATATCCTGAACATTGCCTAC
TAGTGTAAATCTTGAAAGTTACTACTCCCTCTGTTCACTTTTATA-----------------------------------
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----------------------------------------AGTGTACAGTGATTGTTGCTGAAAGAACTTTTGGTACCGA
GGCTCTTCA-------GGTTTCACTTTTAGAGATTGGCCAACTGATGCCCCGTGTAAATATTCAACATGCATCACCCTAT
GATTTGAGACATTTTGTGGAGTGCATGCTATTATGGTTCTACGCAGCTGGGTGACACTGCTAGGGACCTGGAGACGGTAT
CAAGATTGCCTGTGCATTTGCAGGAACATG--------AT----------------------------------------
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--------------------------------------GAGTAGCAATTACTGGTTGATGATGACTTGTCAGAAACTTAT
GGGTTTGGTTTCTGGAATGCTTATTGGCTTAAA-TTTTCACTTCCATTTTCTGCTGGTGATATGTGACTCAGCGAGTACT
ATCCTCCACTCA------GGACCCAACCACAGTTTGATTTTGCTAAATTGGTACCCAACACATTACAACTTACAAGCCAG
TTCAACACCTTCAGCATTCGGCACTTGTAAAAGGTTACTGGAAACCAATTTGTTAATCATCACATGAAGAGTTATTATCT
TCACAAGGTTATTGAAAACTAATTTCT
>chr1B_2
-TGTTGCTTACCGGCATCAGAAACAAGGAAGATGAAGGGGGGCCATGGCTGAGTCAAGGACGACCAGACAGTGGCCGAAT
GGAAGAGCAGCAACAGCTCCTACTGCCGGATCTGCTGCCGCCACTGCCGTCATGTCCGCACAGATCTGAGTCACCT-TCG
CCGGTGGTGGTGAGGCTAGAGGAGGTGACTGTCC-TAGAGGTAGCGATGACCGAGTAAATGGGTGAGGGGGGAGGGGTGA
GCCTAGATTTGGTGCTGTGTTGCCGCGCCCGATTTCCATCTCCCGCCATCCCCACTCTCTTTCGCCCTACCCCCTGCT--
-------TGCGAGCTTGCGCCGCCCTCAGCCTGGCTCACTAGAAACTACCGGCTCGACAGTTTCTAGCGAGCCAGGCTGA
GGGCTGCTTTAAGCTTCATGCGAATGCGAGCTAGCCCACTGTGTTTGCAACCAAACACACATTTCGTGGCCCAACTAGGC
CTGGTTGCGATTTTGTGGGTAACCAAACGCGTCGTAA-------------------------------------------
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>chr6D_65
-----------------------------------------------------------------GGGCCATGGCCAAAT
GGAAGAGCAGCAGCAGCTCCTACTACCGGATCTGCTACCGCCGCTT-----------GCACAGATATGAGTTGCCGC-CG
CCGGTGTTAATGAGGCTAGAGGAAGTGGTTGTCCTTAGAGGTAGTGGTGACCGAGTAAATGGGTGGGGGT-----GGTGA
GCCTAGATTTGGCGTTGTGTCGCCGCGCCCGATTTCCATCTCTCGCCATCCCCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCGGCATGGCCAATCGAGGGCGTT
GATGCGCCCTCCAACGGCTCACGCATCGTGCAGCACAAGAAAAAAAAGGCGTGTCACTTGCCGAAGCTACCCGCTTCAGT
CCCGAGCTCTCGGACCCAGATGGCATCCACCTCGCCGGAACCCGCAGCGACCGAGACCGGCGACTCCGTCAAAATCCGCC
GCCTACAGATCGCCGACCGCGAGAGGGGCTTCCTACCCCTCCTCTCCCAGCTCTCCTCCTGCCCGGACCTTACCGAGTCC
GAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGC
TCCGGAGCGGCGGATCCTCTCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACG
TGGAGGACGTGGTGGTCGACGCCGCCGCGCGCGGCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGATCGCG
AAGGGGGCCGGCTGCTACAAGGTCATCCTGGACTGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGA
GAAGGGGGTTCAGATGGCCGTGTACTTCTGA-------TCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTG
CCCCATCGCATC-----TATCCGTTTGTCTGTGGCAATCTGTTATCATACTATCATTACTCTGAACTTGTCCGTGTTAGT
GACTGAGAATGCTATTTATGGAATCCCAACTTTATGATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCACAAAC
GAAAATTCCGTGCTATATTGTCA-GGTTAAATAACAGCGATGATCCTGTCGCTGC--TA--ATGTTCCAAATATCGGCCA
GTTAATCGGCATCTCGGTCAGTTCATTGCTACTCAGGTGGATCACCGAATAGCCGATAGTAACTGATTTATCAGCGGATT
AACTGCTGATTCGCCTATTTATCCCTACTCAGCACCTGAACGATGCGGTACCAGTTACCGATATCCTGAACATTGCCTAC
TAGTGTAAATCTCGAAAGTTACTACTAGTTCTTTCAGTCAGTAAAGCTGTCAGGCTAAGCTTTGCCAACCAAGGACAAGT
GAACCGGGGATTTTCTGTTAGAGCTGAATGAAGTTCTATGCATATTACTGTAGATGGTAAACCATAACACCATCATAGTA
CCTGGTAGGAGCTGCTATAGTGAATCAAATCTTTCTAGGCATTTACCAAATGAGCTAGCATAGACACATAATCATGCCTA
TTCAATCAAATTATGTGTCATGAAGGTAACCCTGTCTAACAGTGTACAGTGATTGTTGCTGAAAGAACTTTTGGTACCGA
GGCTCTTGA-------GGTTTCACTTTTAGAGATTGGCCAACTGATGCCCCTTGTGAATATTCAACATGCATCACCCTAT
GATTTGAGACATTTTGTGGAGTGCATGCTTTTATGGTTCTACGCAGCTGCGTGACACTGCTAGGGTCCTCGAGACGGTAT
CAAGATAGCCTGTGCATTTGCAGGAACATGATAACTTGATAAGTACTCCCTCCGCTCCCAAATGTAAGTCTTTTTAGAGA
TTTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGAAAATATACATCCGTATGTTGTAG
TCCATTTGAAACCTCTAAAAAGACTTG-----------------------------------------------------
----------------------TATTTACGAACGGAGGGAGTAGCAATTACTAGTTGATGATGACTTGTCAGACACTTAT
GGGTTTG-TTTCTGCAATGCTTATTGGCTTATATTTTTCACTTCCATTTTCTGCCGGTGATATGTGACTGAGCGAGTACT
ATCCTCCACTCGGAGTCGGGACCCAACCACAGTTTGAATTTGCCAAATTGGTACCCAAGACATTACAACTTACAAGCCAG
TTCAACACCTTCAGCATTCGGCACTTGTAAAAGGTTACTGGAAACCAATTTGTTAATCATCACATGAAGAGTTATTATCT
TCACAAGTTCATTGGAAACTAATTTCT
>chr6A_333
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------------------------------CTGACTCGCTAGGAATTGCCGATTCGACAGTTTATGACGAGCCAGGCTGA
GGGCTGCTTTAAGCTTCGTGCGGATGCGAGCCAGCCCACTATGTGCGCAACCAAATGCACATTTCGTGGCCCAACTGGGC
CTGGTTGCGATTTCGTGGGCAACCAAACGTGCCCTAAGGTATGATTATTTGTTTCTCCCTACACAACTTCTTCTCCTACA
TTTGTTCTCATGACAGCCTCTCTCTTCCACCGGAGCCTCAACCCTCCATCCATTGTTGTTCCAGGTCCTTTTCTTCTCCC
TTTTGCGGTGGTTGTCGCCATGACGTTCAACCCTTACACACATCCTTTGATTTCCTCTCCCCCTCTATCCCTCTTCGTCT
TTCTCAATTGCCCTTCTGTTTCTTCTCGTCCGTGTCGTGTCTAAGTCATTGTCAGGCGAATGATCGCGTCGAAGATTTCT
ATTTTTTTTTCAACTAAGCTTGAACCAGGGGGGCTTCTAAGCCTGCACGT------------------------------
----------GCTTTGTTTGCATTTGTAGCACTGATAGC--------------AAATCGGCATGGCCAATCGAGGGCGTT
GATGCGCCATCCAACGGCTCACGCATCGTGCGGCACAAGAAAAAAGAGGC--GTCACTTGCCGAAGCTACCCGCTTCAGT
CCCGAGCTCTCGGACCCAGATGGCATCCGCCTCGCCGGAACCCGCAGCGACCGAGACCGGCGACTCCGTCAAAATCCGCC
GCCTAGAGATCGCCGACCGCGAGAGGGGCTTCCTACCCCTCCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCC
GAGTTCGCCGCGTGCTTCGCCAACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGC
TCCGGAGCGGCGGATCCTCTCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACG
TGGAGGACGTGGTGGTCGACGCCGCCGCGCGCGGCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGACGGCG
AAGGACGCCGGCTGCTACAAGGTCATCCTGGACTGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGA
GAAGGGGGTTCAGATGGCCGTGTACTTCTGAATTCTGATCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTG
TCCCGTCGCATC-----TATCCCTTTGTCTGTGGCAATCTGTTATCATA---TCATTATTCTGAACTTGTCTGTGTTAGT
GACTGAGAATGCTATTTATGGAATCCCAACTTTATCATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCATAAAA
GAAAATTCCGTGCTATATTGTCTTGGTTAAATAACAGCGATAATTCTGTCGCTACTATA--ATGTTCCAAATATAGGCCA
GTTAATCGCCATCTCGGTCAGTTAATTGCTACTCAGGTGGGTCACCGAATAGCCGATAGTAACTGATTTATCAGCCGATT
AACTGCTGATTCGCCTATTTATCCCTACTCAGCACCTGAA------GGTACCAGTTACCGATATCCTGAACATTGCCTAC
TAGTGTAAATCTTGAAAGTTACTACTAGTTCTTTCGGTCAGTAAAGCTGTCGGGCTAAGCTTTGCCAACCATAGACAAGT
GAACCGGGGATTTTCTGTTAGAGCTGAATGAAGTTCTATGCATAGTACTGTAGATTGTAAACCATAACACCATCATAGTA
CCTGGTAGGAGCTGCTATAGTGAATCAAATCTTTCTAGGCATTTACCAAATGAGCTAGCATAGACACATAATCATGCCTA
TTCAATCAAATTCTCTGTCATAAAGGTAATCATGTCTAACAGTGTACTGTTATTGTTGCTGAAAGAACTTTTGGTACCGA
GGCTCTTGACTCTTGAGGTTTCACTTTTAGAGATTAGCCAACTGATGCCCCGTGTAAATATTCAACATGCATCACCCTAT
GGTTTGAGACATTTTGTGGAGTGCATGCTATTATGGTTCTACGCAGCTGGGTGACACTGCTAGGGTCCTGGAGACGGTAT
CAAGATAGCCTGTGCATTTGCAGGAACATG--------ATAAGTACTCCCTCCATTCCAAAATATAGTGCGCCTGCACTT
TCCGAGGTCCAACTTTGACCATAAATTTAACCAACGAGACCGACTGCGGCGGGAGAAAAAATTATATAGTTGAAAACTTC
TTTTGAATACGAATTCACTGGTATAACTTTTGCTCCGTCGCAGTCGGTCTCGTTGGTTAAATTTATGGTCAAACTTGAAG
CACGGGAATAGAGGAAGCACTATATTTTGGAACGGAGGGAGTAGCAATTACTGGTGGATGATGACTTGTCAGATACTTAT
GGGTTTGGTTTCTGGAATGCTTATTGGCTTATA-TTTTCACTTCCATTTTCTGCTGGTGATATGTGACTGAGCGAGTACT
ATCCTCCGCTCGGA------ACCCAACCACAGTTTGAATTTGCTAAATTGGTACCCAAGACATTACAACTTACAAGCCAG
TTCAACACCTTCAGCATTCGGCACTTCTAAAAGGTTATTGGAAACCAATTTGTTAATCATTACATGAAGAGTTATT----
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>SNPs
S-----------------SS-S--S-S--S-SS----------------S----S--------------S-S--------
-------------------------SS--------S-S-S----------------------------------------
------------S-------------------------------------------------------------------
-------------S-S---S-----------------SS--S---------------S----SSS---S--S--SS--SS
SSSSSSS-------------------------------------------------SS-SS--------S-------S-S
------------S----------------------------------------------------S--S-S-----S--S
---------------------------S---------------------------S---------------S--------
------S-------------------S----------------------S---------------------------S--
-----S--------------S--S--------------------S----S--S------------------------S--
-----------------S---S-------S----------------------------------SS--------------
--------------------------S-----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------------S-----S------------------------------------S--------------
---------SS---------------------------------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------------S----S---------------------------------------
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----------S---------------------------------------------------------------------
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------------SSSSS---------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------------------------------------SS-------------------
-----------------------------S--------------------------------------------------
--------------------------------------------SS----------------------------------
--------------------------SSS---S-SSSSSSS--S------------------------------------
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-------S------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------S-------------------------------------------------------------------------
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-------------------------------------------------------------------------S------
-------------------------------S-------------------------------------S----------
-----------S-------------------------S--------------------S---------------------
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-------S-S----S------------
>forward_20
ATGTTGCTTACCGGCATCGA------------------------------------------------------------
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>reverse_1107
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------------------------------------------------------------------TGTCAAAATCCGCC
GCCTAG--------------------------------------------------------------------------
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>forward_862
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------------------------------------------CTGCACGTGCTTTAATCGCA------------------
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>reverse_2892
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-----------AGGACCCAACCACAGTTTGA-------------------------------------------------
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