>input_sequence_78499
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---------------------ATGGTGGCCGAGGCCGTGGCGCAGGCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGG
CGACGGCAAGGTGTCGGCGGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCGG
CGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGATCGGCCTCGCCGCC
GCCGGAGACGACGGTGGGGCGGCCGGAGG---CGACGAC------GAGGAGGTGAGGCGGCGGTGCCTAAGGGAGGCGTT
CGCGATGTACGCGACGGGGGGCGGCGAGGAGCAGGGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGC
TGCTGGGGGCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTC
TCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAA--------------------------------------
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>chr5A_1_TraesCS5A01G153400
AACCATAAAGTTAAAACATAATGATAATTCATTTAGTGACAAAAGAAGGCTTGGAGAACTTAAGCATGGAATACTCTAAA
ACAAAGAA---GTGTTTGTGTTTTGAGATTTGTACATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAA
TTCGATGGATGGAGATGATATTCAATGACTAATAGTGATTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAG
TGATCAATATTCAAAATTATCCATACATTATATAATGGTATAAAAGTGTTACCCTCAAATGGAACCATGGCAAAACAGAA
GAAACTTGGAAAGTACTAACCACATCCTCGAAATTTGGTCAAAATAATGATTTTGGACACAATCTTGAAAACAATGACC-
-CATCATGGGAAAGCATGAAACGAGAGACTCTTAACAGAA--------------------TTGCCTTAAGTAAAGACCCA
AAAAGATTTCTGTGAGTTTTCACAAACCAATGGTATTGGGAATTTTCTCAATACCATGAAAAAATGATCTCTAAAAAAAC
CCAAATATATAGTATAGTAT-----AGCAAAAATAAAGAAATTCGATACCAATGTTTGACGTGAAATATTCCCTCGAAGT
CAAGTAATGCAAAAATAATCATTTTGTACTAGAGCTTTGTTGTGACGC-------TTAATTAATTAATTAAC----GCAC
TGGGAATGAAGGACGCACGATGCATCGCAGTTCGCAGCACACAGAAAGCTGCTGGTAACCCTA-----CGGCTACGCGCA
TATCCACGGAACCTGATAGCGTTGCTGACGCGTTGCCACGGTCACGGAGAAGGTTCTAAGCCTGAACTCTCTGGAATTAT
TTGACATTCTGCCCGTACAGGGCCCGTACCAGCATATATAGCATCAACACCCATGCGCCACACCATGTCCATCAAGCCAC
GTGATA----------TAAGGTTGTGAGCAGTTCACCAGCAAGATACA---TAGAGGTCACAGAGAAGCCAGCA--AGCA
AACAAGATTGAGCATTCACGGATGGTGGCCGAGGCCGTGGCGCAGGCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGG
CGACGGCAAGGTGTCGGCGGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCGG
CGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGATCGGCCTCGCCGCC
GCCGGAGACGACGGTGGGGCGGCCGGAGG---CGACGAC------GAGGAGGTGAGGCGGCGGTGCCTAAGGGAGGCGTT
CGCGATGTACGCGACGGGGGGCGGCGAGGAGCAGGGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGC
TGCTGGGGGCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTC
TCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAAAGGACGGTTGGTTTCATTTCATTCGTTCGCTTTTTTCT
TCTGTGTTTTTGACATGTGGTTGCACTTGTTCACATGGTGGATGTTTCAATTGTATGCTGGGGGTTTGGGTGTGATGCTT
AACTTTTGTTTGTTCTTCTTTATCTTTTCAATTTTGATGATGAAGAGAAGTTGAGGGTGTCATGTTGTAAATAAGCTCAT
ACCTCTTCCTATTTGAC-----CTCTAGCTCATTGATAAGAATCTTGTTCGTGATTAGTTTAAGCAAATGGTAAACCCTC
TGTTTACTC--TTTTTTGAATAGATAATAAAGGATATTGGCGCCGCATGTTGGCCTTCTCATGGGGCAACTCACTTCCTT
CTCTCCTTTGCATGCAACACTAACACATGAGCATGACATCACCAAAAAATTCTTTAAAGTTTGAATTTAAAAAGAA----
-TCTCAAACCGCTGGCCTGGTAGACGGTCCGATTTCATTCGTCAA-----------------------------------
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----------------------------------------------GGCGGAGAACCCACCGATGAAAGAAAGGTCGCTA
ATCGGATTAACGGTTTGCGAGATAAATCACTTTTAAAATTCCCGTTTAGCAACTAATATGATGGTGTCAGCATGATGTGT
AAGATTTCTTTTTTTTAACCACACCCACATATTAATTAAATTAGAATCTTTATACAATCATTCATTACAGCATCTGCCAC
ACAGGCCGAAACACCATTAATAAAAACACTGTCAGGCCTATTATTAAAACTAAACTTAGCTATCTCATGTGTCACCATAT
TAGCTTCCCTGCTAATATTGGAAATCTTTACATTCGCCAGCATCTTTGAAATACTCAATGCTTCCTTCTTAAGGTCAACA
AGGGGAGATTTTTCAAAAATATCCTTTCCTAGAAGACCAACCACAAAAGAACAATCAGTTCCTAAAATGATGGGTTTGTG
AATTGTGATACCGATATACAATCCGGAGATTGCCGCTCTAAGTTCCGCTTCTTCAACGCTATTAGCAGGCTCCAATATAA
TCCCAAGAGGAAATT
>chr5B_6
-----TAAAGTTAAGACATAATGATAATTCATTTAGTGAAAAAAGAAGGCTTGGAGAACTTAAGCATGGAATACTCTAGA
ACAAAGAA---GTGCTTGTGTTTTGAGATTTGTATATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAA
TTCGATGGGTGGAGATGATATTCAGTGACTAACAGTGCTTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAA
TGATCAATATTCAAAATTATTCGTAAACTATACAATGGTATAAAAGTGTTACCTTGAAATGGAACCATGGCAAAACAGAA
CAAACTTGAAAACTACTAACCACATCCTCGAAATTTGGTCAAAATAATGATTTTTGACATGATCTTGAAAACAATGACCA
ACAGCATGGGAAAACATGAAATGAGAGACT-TTAACAAAAACTACCGAAATGCGTGGGTGTTGCCTCGAGTAAAGACGCA
ACAAGATTTCTGTGAGTTTACACAAACCAATGGCATTGGGAATTTTCTCAATACCATGAAAAAATGATCTCTAAAAAAAT
CCAAATCTATAGTATAGTATGGTATAGCAAAAATGAAGAAATCCGATACCAATGTTTGAC--------------------
-----------------------------TAAAACTTTGTTGTGACGC-------TTAATTAATTAATTAATTAATGCAC
TGGGAATGAAGGACGCACGATGCATCGCAGT-CGCAGCACACAGAAAGCTGGTGATAACCCTA-----CGGCTACGCGCA
TATCCAGGGAACCTGATAGCGTTGCTGACGCGTCGCCACGGTCATGGAACCGGC--------------------------
----CATTTTACCCGTACAGAGACCGTACCAGTATATATAGCACCAACACCCACGCGGCACACCATGTCCATCAACCATC
AATGCAATAATCCACGTACGGTTGTGAGCGGTTCACCAGCAAGATACA---TAGAGGTTACAGAGAAGCCAGCAGCAGCA
AGCAAGATTGAGCATTCACGGATGGTGGCCGGGGCCGTGGTGCAGGCGTCATCGGTGTTCGCCGCCTTCGACAAGGACGG
CGACGGCAAGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTTTCCGAGGAGGAGGCCG
CGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCC
GCCGGAGACAACGGTGGGGCGGCCGGAGACGACGACGAC------GACGAGGTGAGGCGGCGGTGCCTGAAGGAGGCGTT
CGCCATGTACGCGACGGGGGGCGGCGAGGAG---GGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGC
TGCTGGGGTCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTTGACCTCAACGGCGACGGCGTCCTC
TCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAAAGGAAGGATGGTTTCATTTCATTCGTTCGCTTTTCTCT
TCTGTATTTTTGACATGTGGTTGCAGTTGTTCACATGATGGACGTTTCAATTGTATGTTGA-GGCTTGGGTGTGATGCTT
AAATTTCAAGTTTTCTTCTTTTTCTTTTCAGTTTTGATGATGAAGAGAAGTTGAGGGTGTCATGTTGTAAATAAGCTCAT
ACCTCTTCCTATTTGACATCTACTGTAGTTCATTGATAACAATCTGGTTCATGATTATTTTAAGCAAATGGTAAACCCTC
CGTTGACATTTTTTTTGGAACAAATAATAAAGGATA-------------TTGGCCTGCTCATGGGGCGGCTCACTTCCTT
CTCCCCTTTGCATGCAACAATAACACATGAGCATGAT---ACCAAAAAATTCTTTAAACTTTGAATTTCAAAAAGTTTAT
CTCTCAAACCGTTAACCTGGTCGACGGTCCGCTTTCATCATTATCTTCGTCACGCGAGATTTTTGAAACTAAATCCCATG
TCGGAATGATTTAATTACTTTTTTTGTCGATACTAGCCACATTACTATCACTTATTTACCATGTTATTAGCTATTTAGTT
GTCAAATTGATGAAAGTCGATATACTCATCTAAAAGACTTTACAGTATGCCTCCGTCCCGAATTTACTATGATCTAGATA
CATCCATTTCTGCGGCAAGTAATTCAGAACGAAGGGAGTACTTGTGTGGGTTGATATCTCTTCTTACTTATTGTTACACT
TGAATACTCACTCTTGGGCTCAAAGTAATATTGCAATGTTTAAAAACATACACAATTATTGACCGGTAAGGCGGTAACTG
TACACAAACTATGTGACAAATGTTCCCACTTAAAAATGGCACTATGTGATAACATAATCTGGCAACTTGTGACGACAAAA
GAAATCACTGAAGCACGTCAACGTGAGATCGTTTGAAAGCCCTCTCGGAGGAGAACCCACCGGTGAAAGAAAGGCCGCTA
ATCGGATTAACGGTTTGCGAGATAAATCATTTTTAAAATACCCATTTAGCAACTAATATGATGATGTCGGCATGATGAGT
AAGA----------------------------------------------------------------------------
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>chr5D_6
-----TAAAGTTAAAACATAATGATAAT-CATTTAGTGAAAAAAAGAAGGCT-GAGAACTTAAGCATGGAATAATCTAGA
ACAAAGAATAAGTGTTTGTGTTTTGAGATTTGTACATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAA
TTCGATGGATGGAGATGATATTCAA----TAATAGTGCTTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAA
TGATCAATATTCAAAGTTATTCGTACACTATATAATGGTATAGAAGTGTTACCTTGAAATAGAACTGTGGCAAAACAGAA
CAGACTTGAAAACTACTAACCACATCCTCAAAATTTGGTCAAAATAATGATTTTTGACACGATCTTGGAAACAATGACCA
ACACCATGGGAAAGCATGAAACGAGAGACTCTTAACAAAAACTACGAAAATGCGCGGATGTTGCCTCAAGTAAAGACCCA
AAAAGATTGTTGTGAGGTTACACAATCCAATGGAATTGGGAGTTTTCTCAATACCATGAAAAAAT--TATCTTGAAAAAT
CCAGATCTATGGTATGGTATGGCAG-----AAATGAAGAAATCCGATACCAATGTTTGACGTGAAATATTCCCTCAAAGT
CAAGTAATGCAAGAATAATCATTTCTTACTAAAGCTTAGTTGCGACGCTTACTAATTAATTAATTAATTAATTAATGCTC
TGGGAATGAAGGACGCACGATGCATCGCAGCAG-----ACGCAGAAAGCTGGTGATCATAACCCTACGCGGCTACGCTCA
T------GGAGCCTGATAGCGTTGCTGACGCGTCGCCACGGTCATGGAACCGGC--------------------------
----CATTTTACCCGTACGGAGACCGTACCAGTATATATAGCACCAACACCCACGCGGCACACCATGCCCATCAACCATC
AAGGCAATAATCCACGTGAGATTGCAAGCACTTCACCAGCAAAACACGTACTAGAGGTTACAGAGAAGCCAGCA---GCA
AGCAAGATTGAGCGTTCACGGATGGTGGCCGAGGCCGTGGCGCAGGCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGG
CGACGGAAAGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCCG
CGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCC
GCTGGAGACGACGGCGGAGCGGCCGGAGG---CGACGACGAGGAGGAGGAGGTGAGGCGGCGGTGCCTGAGGGAGGCGTT
CGCGATGTACGCGACGGGAGCCGGCGAGG---AGGGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGC
TGCTGGGGTCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTC
TCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAA--------------------------------------
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>SNPs
SSSSS----------------------------------S--------------------------------------S-
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-------------------------------------S-----------------------------------------S
--------------------S-S----S-------------------------S-S------------------------
S-------S---S-----------------------------------------S-----S-------------------
---S---------------------------------S----------------------------S-------------
-------------------S-------------S---------------------------------------------S
------S---------------------------S-------S--------------------------------S----
------------S-----------SS-----S---------------------------------------S--------
-------------------------------S-------------------S--S-------------------------
------S--------------------------S----------S---SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----S-S---------S-S---------S----------S---------S---S-----------------S-SS-
SS-SS-----------------------------------------------------S---------------------
-S------------------------------------------------------------------------------
------------------S-----------------------------------------------------------S-
-----------------------------------------------------------------S----S----S----
--------------------------------------------------------------------S-----------
-------------------------------S------------------------------------------------
--------S-----------------------------------------------------------------------
----------------------------------------------S--S--------------------------S---
-----S-------------------S-----------S----S--------------S--SS--S---------------
--S---SSSS-S---------S--------S-------------------------------------------------
------------------------S---S----------S-----S----S------S----------------------
S---S--SS-------S---S-S-------------SSSSSSSSSSSSS-------S----------SS-----------
---S---------------S----------------SSSS------------------S---------S----SSS----
-----------S-SS------S---------S------SSS-SSS-----------------------------------
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------------------------------------------------S-------------S-----------S-----
-----------------------------S---------S---S-------------------S----S--------S--
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_901
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-TGACATTCTGCCCGTACAGG-----------------------------------------------------------
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>reverse_1887
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----------------------------------------------ATGTTGGCCTTCTCATGGGG--------------
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